Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0007216

Physical Location & Seq

Genomic Coordinates Forward (+)

4703000 .. 4704591

Gene Structure 1592 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g07900.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGCAAGGTTGGTGATGCAGCACCACCAACAGAACAGACTACCTTCTTTCTCTCCTCTTCCTTCTCTTTCTGACTTCAATGGCACCAAACTCCAAACTCAACTCCAGTATAGGAGAAAAGTATCACAGCCAAAAGAAGCATTACATGTTACAGCATCAAATGCAAAGAAGACTCTTAAAGTGAGCCTCACTGAGCAAATGTCAGGTGAATCGAATAAGGGTGGTGCTGCTGAATTTTCTTCCAAGACTAAAGATTTTGCAGTTCCTAGGAGGAATGCAATGGCCTTAATCTTGTCAGGTTGCATCTTCTCTCAAGTCAGTTGGCAAAGTCCTGCATTTGCTGTACAATCTGTTGCATTAAGGGAATACGTAGATAGTTTTGATGGCTACTCATTCAAGTACCCTAAGAATTGGATTCAAGTTAAAGGTGCTGGAGCTGACATATTCTTTAGAGACCCTTATATTCTTGATGAAAACCTAGCTGTGGATTTGTCCTCTCCTTCATCCTCGAATTACAAGAGTGTTGAAGATCTGGGGCCACCAGAAGTAGCCGGAAAGCAAGTGCTTAGGCAGTATCTGACAGAGTTCATGTCTACAAGACTCGGGGTGAAGCGTGAGGGGAAAGTTCTCTCTACATCTTCAAGAGTTGCTGACGATGGGAAGCTTTATTATCAAGTTGAGGTGAACATAAAATCATATGCAAGCAACAATGAACTAGCTGTTATGCCAAAAGACCGCGTAGTAAGTATGGAATGGAACAGGAGGTACCTCACTGTTCTAGGAGTTGAAAACAACCAATTGTATGCTTTGAGATTACAGACACCAGAAAATGTATTTGTGGAAGAAGAAAGTGATCTTCGCCGGGTTATGGAGTCATTTAGAGTGAACAAGGTGGCTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009543 GO:0009570 GO:0009579 GO:0009987 GO:0015979 GO:0016020 GO:0016043 GO:0019684 GO:0022607 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048564 GO:0055035 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PsbP

Protein Analysis

301

Amino Acids

33.83

Weight (kDa)

9.3

Isoelectric Point (pI)

53.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PsbP	PF01789	27 - 202	1.6e-37	PsbP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007216)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15510 AT4G15510 AT4G15510 AT4G15510 AT4G15510
fragaria_vesca	FvH4_6g07900 FvH4_6g07900 FvH4_6g07900 FvH4_6g07900
malus_domestica	MD04G1191200.v1.1 MD12G1203800.v1.1
prunus_persica	Prupe.6G309700_v2.0.a1 Prupe.6G309700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0457591
rosa_laevigata	RLG00000025207
rosa_multiflora	Rmu_sc0005321.1_g000005
rosa_roxburghii	Rroxscaffold_6G00421700
rosa_rugosa	Rorug03G0021700 Rorug03G0021800 Rorug03G0021900
rosa_samantha	Rh3AG082300 Rh3BG084600 Rh3CG084800 Rh3DG086000
rosa_wichuraiana	Rw3G007070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	765
AccB1I	GGYRCC	2 cut(s)	83, 765
AccI	GTMKAC	1 cut(s)	593
AccII	CGCG	1 cut(s)	738
AciI	CCGC	1 cut(s)	736
AcsI	RAATTY	1 cut(s)	233
AfaI	GTAC	3 cut(s)	345, 401, 767
AfiI	CCNNNNNNNGG	2 cut(s)	484, 868
AflIII	ACRYGT	1 cut(s)	145
AgsI	TTSAA	6 cut(s)	79, 397, 419, 527, 642, 788
AluBI	AGCT	4 cut(s)	437, 482, 664, 719
AluI	AGCT	4 cut(s)	437, 482, 664, 719
Alw26I	GTCTC	1 cut(s)	447
AlwNI	CAGNNNCTG	1 cut(s)	577
Ama87I	CYCGRG	1 cut(s)	602
AoxI	GGCC	2 cut(s)	282, 536
ApeKI	GCWGC	3 cut(s)	19, 227, 896
ApoI	RAATTY	1 cut(s)	233
Asp718I	GGTACC	1 cut(s)	765
AspA2I	CCTAGG	1 cut(s)	266
AspS9I	GGNCC	1 cut(s)	536
AsuC2I	CCSGG	1 cut(s)	863
AsuHPI	GGTGA	4 cut(s)	25, 218, 619, 694
AvaI	CYCGRG	1 cut(s)	602
AvrII	CCTAGG	1 cut(s)	266
BanI	GGYRCC	2 cut(s)	83, 765
BbsI	GAAGAC	1 cut(s)	176
BbvI	GCAGC	3 cut(s)	31, 214, 883
BccI	CCATC	2 cut(s)	377, 650
BcnI	CCSGG	1 cut(s)	863
BcoDI	GTCTC	1 cut(s)	447
BfaI	CTAG	4 cut(s)	267, 479, 716, 779
BglII	AGATCT	1 cut(s)	529
BisI	GCNGC	3 cut(s)	20, 228, 897
BlnI	CCTAGG	1 cut(s)	266
BlsI	GCNGC	3 cut(s)	21, 229, 898
Bme1390I	CCNGG	1 cut(s)	863
BmeT110I	CYCGRG	1 cut(s)	602
BmgT120I	GGNCC	1 cut(s)	536
BmiI	GGNNCC	3 cut(s)	85, 537, 767
BmrFI	CCNGG	1 cut(s)	863
BmsI	GCATC	3 cut(s)	6, 164, 312
BpiI	GAAGAC	1 cut(s)	176
BpmI	CTGGAG	2 cut(s)	89, 453
Bpu10I	CCTNAGC	1 cut(s)	566
BpuEI	CTTGAG	1 cut(s)	297
BpuMI	CCSGG	1 cut(s)	863
BsaAI	YACGTR	1 cut(s)	370
BsaI	GGTCTC	1 cut(s)	447
BsaJI	CCNNGG	1 cut(s)	266
Bsc4I	CCNNNNNNNGG	2 cut(s)	484, 868
Bse1I	ACTGG	1 cut(s)	106
Bse3DI	GCAATG	1 cut(s)	285
BseDI	CCNNGG	1 cut(s)	266
BseGI	GGATG	1 cut(s)	503
BseLI	CCNNNNNNNGG	2 cut(s)	484, 868
BseMI	GCAATG	1 cut(s)	285
BseMII	CTCAG	1 cut(s)	183
BseNI	ACTGG	1 cut(s)	106
BseRI	GAGGAG	1 cut(s)	45
BseXI	GCAGC	3 cut(s)	31, 214, 883
Bsh1236I	CGCG	1 cut(s)	738
BshFI	GGCC	2 cut(s)	284, 538
BshNI	GGYRCC	2 cut(s)	83, 765
BsiHKCI	CYCGRG	1 cut(s)	602
BsiSI	CCGG	2 cut(s)	552, 862
BslI	CCNNNNNNNGG	2 cut(s)	484, 868
BsmAI	GTCTC	1 cut(s)	447
BsmI	GAATGC	1 cut(s)	280
BsnI	GGCC	2 cut(s)	284, 538
Bso31I	GGTCTC	1 cut(s)	447
BsoBI	CYCGRG	1 cut(s)	602
Bsp1407I	TGTACA	1 cut(s)	343
Bsp143I	GATC	2 cut(s)	529, 853
BspACI	CCGC	1 cut(s)	736
BspANI	GGCC	2 cut(s)	284, 538
BspCNI	CTCAG	1 cut(s)	184
BspFNI	CGCG	1 cut(s)	738
BspLI	GGNNCC	3 cut(s)	85, 537, 767
BspT107I	GGYRCC	2 cut(s)	83, 765
BspTNI	GGTCTC	1 cut(s)	447
BsrDI	GCAATG	1 cut(s)	285
BsrGI	TGTACA	1 cut(s)	343
BsrI	ACTGG	1 cut(s)	106
BssECI	CCNNGG	1 cut(s)	266
BssMI	GATC	2 cut(s)	529, 853
BssT1I	CCWWGG	1 cut(s)	266
Bst4CI	ACNGT	1 cut(s)	775
Bst6I	CTCTTC	1 cut(s)	63
BstAPI	GCANNNNNTGC	1 cut(s)	161
BstAUI	TGTACA	1 cut(s)	343
BstBAI	YACGTR	1 cut(s)	370
BstC8I	GCNNGC	1 cut(s)	703
BstDEI	CTNAG	3 cut(s)	192, 405, 566
BstF5I	GGATG	1 cut(s)	503
BstFNI	CGCG	1 cut(s)	738
BstKTI	GATC	2 cut(s)	532, 856
BstMAI	GTCTC	1 cut(s)	447
BstMBI	GATC	2 cut(s)	529, 853
BstMWI	GCNNNNNNNGC	1 cut(s)	161
BstNSI	RCATGY	1 cut(s)	149
BstSCI	CCNGG	1 cut(s)	861
BstSNI	TACGTA	1 cut(s)	370
BstUI	CGCG	1 cut(s)	738
BstV1I	GCAGC	3 cut(s)	31, 214, 883
BstV2I	GAAGAC	1 cut(s)	176
BstX2I	RGATCY	1 cut(s)	529
BstYI	RGATCY	1 cut(s)	529
BsuRI	GGCC	2 cut(s)	284, 538
BtsCI	GGATG	1 cut(s)	503
BtsIMutI	CAGTG	2 cut(s)	189, 771
Cac8I	GCNNGC	1 cut(s)	703
CaiI	CAGNNNCTG	1 cut(s)	577
Cfr13I	GGNCC	1 cut(s)	536
Csp6I	GTAC	3 cut(s)	344, 400, 766
CviAII	CATG	2 cut(s)	146, 589
CviQI	GTAC	3 cut(s)	344, 400, 766
DdeI	CTNAG	3 cut(s)	192, 405, 566
DpnI	GATC	2 cut(s)	531, 855
DpnII	GATC	2 cut(s)	529, 853
Eam1104I	CTCTTC	1 cut(s)	63
EarI	CTCTTC	1 cut(s)	63
Eco105I	TACGTA	1 cut(s)	370
Eco130I	CCWWGG	1 cut(s)	266
Eco31I	GGTCTC	1 cut(s)	447
Eco88I	CYCGRG	1 cut(s)	602
EcoT14I	CCWWGG	1 cut(s)	266
ErhI	CCWWGG	1 cut(s)	266
FaeI	CATG	2 cut(s)	149, 592
FatI	CATG	2 cut(s)	145, 588
FauNDI	CATATG	1 cut(s)	697
FblI	GTMKAC	1 cut(s)	593
Fnu4HI	GCNGC	3 cut(s)	20, 228, 897
FokI	GGATG	1 cut(s)	490
Fsp4HI	GCNGC	3 cut(s)	20, 228, 897
FspBI	CTAG	4 cut(s)	267, 479, 716, 779
GluI	GCNGC	3 cut(s)	20, 228, 897
GsuI	CTGGAG	2 cut(s)	89, 453
HaeIII	GGCC	2 cut(s)	284, 538
HapII	CCGG	2 cut(s)	552, 862
Hin1II	CATG	2 cut(s)	149, 592
HindIII	AAGCTT	1 cut(s)	662
HinfI	GANTC	5 cut(s)	172, 209, 415, 600, 872
HpaII	CCGG	2 cut(s)	552, 862
HphI	GGTGA	4 cut(s)	25, 218, 619, 694
Hpy166II	GTNNAC	3 cut(s)	594, 685, 886
Hpy188I	TCNGA	2 cut(s)	73, 579
Hpy188III	TCNNGA	2 cut(s)	467, 642
Hpy8I	GTNNAC	3 cut(s)	594, 685, 886
HpyAV	CCTTC	3 cut(s)	54, 72, 510
HpyCH4III	ACNGT	1 cut(s)	775
HpyCH4IV	ACGT	1 cut(s)	369
HpyCH4V	TGCA	8 cut(s)	19, 164, 260, 278, 303, 335, 356, 701
HpyF10VI	GCNNNNNNNGC	1 cut(s)	161
HpyF3I	CTNAG	3 cut(s)	192, 405, 566
HpySE526I	ACGT	1 cut(s)	369
Hsp92II	CATG	2 cut(s)	149, 592
KpnI	GGTACC	1 cut(s)	769
Kzo9I	GATC	2 cut(s)	529, 853
LmnI	GCTCC	1 cut(s)	434
Lsp1109I	GCAGC	3 cut(s)	31, 214, 883
LweI	GCATC	3 cut(s)	6, 164, 312
MaeI	CTAG	4 cut(s)	267, 479, 716, 779
MaeII	ACGT	1 cut(s)	369
MaeIII	GTNAC	1 cut(s)	148
MalI	GATC	2 cut(s)	531, 855
MboI	GATC	2 cut(s)	529, 853
MboII	GAAGA	9 cut(s)	50, 181, 231, 298, 539, 630, 848, 854, 857
MfeI	CAATTG	1 cut(s)	797
MflI	RGATCY	1 cut(s)	529
MluCI	AATT	4 cut(s)	233, 409, 511, 797
MlyI	GAGTC	3 cut(s)	166, 594, 881
MnlI	CCTC	9 cut(s)	66, 197, 264, 505, 517, 610, 673, 756, 779
MseI	TTAA	5 cut(s)	177, 287, 359, 423, 901
MspI	CCGG	2 cut(s)	552, 862
MspR9I	CCNGG	1 cut(s)	863
MunI	CAATTG	1 cut(s)	797
Mva1269I	GAATGC	1 cut(s)	280
MvnI	CGCG	1 cut(s)	738
MwoI	GCNNNNNNNGC	1 cut(s)	161
NciI	CCSGG	1 cut(s)	863
NdeI	CATATG	1 cut(s)	697
NdeII	GATC	2 cut(s)	529, 853
NlaIII	CATG	2 cut(s)	149, 592
NlaIV	GGNNCC	3 cut(s)	85, 537, 767
NspI	RCATGY	1 cut(s)	149
PciI	ACATGT	1 cut(s)	145
PctI	GAATGC	1 cut(s)	280
PfeI	GAWTC	2 cut(s)	209, 415
PkrI	GCNGC	3 cut(s)	21, 229, 898
PleI	GAGTC	3 cut(s)	166, 594, 880
PpsI	GAGTC	3 cut(s)	166, 594, 880
Ppu21I	YACGTR	1 cut(s)	370
PscI	ACATGT	1 cut(s)	145
PspN4I	GGNNCC	3 cut(s)	85, 537, 767
PspPI	GGNCC	1 cut(s)	536
PsrI	GAACNNNNNNTAC	2 cut(s)	749, 781
PstNI	CAGNNNCTG	1 cut(s)	577
PsuI	RGATCY	1 cut(s)	529
RsaI	GTAC	3 cut(s)	345, 401, 767
RsaNI	GTAC	3 cut(s)	344, 400, 766
SaqAI	TTAA	5 cut(s)	177, 287, 359, 423, 901
SatI	GCNGC	3 cut(s)	20, 228, 897
Sau3AI	GATC	2 cut(s)	529, 853
Sau96I	GGNCC	1 cut(s)	536
SchI	GAGTC	3 cut(s)	166, 594, 881
ScrFI	CCNGG	1 cut(s)	863
SfaNI	GCATC	3 cut(s)	6, 164, 312
SmlI	CTYRAG	1 cut(s)	312
SmoI	CTYRAG	1 cut(s)	312
SnaBI	TACGTA	1 cut(s)	370
Sse9I	AATT	4 cut(s)	233, 409, 511, 797
SsiI	CCGC	1 cut(s)	736
SspMI	CTAG	4 cut(s)	267, 479, 716, 779
StyD4I	CCNGG	1 cut(s)	861
StyI	CCWWGG	1 cut(s)	266
TaaI	ACNGT	1 cut(s)	775
TaiI	ACGT	1 cut(s)	372
TaqI	TCGA	2 cut(s)	212, 509
TasI	AATT	4 cut(s)	233, 409, 511, 797
TatI	WGTACW	1 cut(s)	343
TfiI	GAWTC	2 cut(s)	209, 415
Tru1I	TTAA	5 cut(s)	177, 287, 359, 423, 901
Tru9I	TTAA	5 cut(s)	177, 287, 359, 423, 901
TscAI	CASTG	2 cut(s)	196, 778
TseI	GCWGC	3 cut(s)	19, 227, 896
TspDTI	ATGAA	4 cut(s)	486, 492, 577, 726
TspRI	CASTG	2 cut(s)	196, 778
XapI	RAATTY	1 cut(s)	233
XceI	RCATGY	1 cut(s)	149
XmaJI	CCTAGG	1 cut(s)	266
XmiI	GTMKAC	1 cut(s)	593
XspI	CTAG	4 cut(s)	267, 479, 716, 779

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.