Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0007216

Physical Location & Seq

Genomic Coordinates Reverse (-)

28392765 .. 28394439

Gene Structure 1675 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1203800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGCAAGGTTGGTGGTGGTGCAGCAGCAGAGACACCCTTCTCTCTCACCTCTCCCCTCTTCTCTCTCTCAGTTCAATGGCACCAGACTCCACACTCCTCAACTCCAGTACAGGAGTAAGGTTTCACAGCCAAAAGGAACATTACATGTTGCAGCATCAAATGCAAAGGAAATTTGTAAAATGGATGGCAGACTGAAGACATCGATTTCCGAGCACTTTCGAGGCGAATCAGACAGGGATTCTGTTGAGATTTCTTCAAAGACTAAAGATTTTGCAGTTCCTAGGAGGAATGCAATGGCCTTAATCTTGTCAGCTTACATCTTCGCCGGAGACAGTTTTCGGAGTGCTGCATTTGCTCAGCAGTCTCTTGTAGGGTTAAGAGAATACATAGATACTTTTGATGGATATTCGTTCAAGTACCCTAAGAACTGGATCCAAGTGAAAGGCGCCGGAGCAGACATATTCTTCAGAGACCCTTACATTCTCGATGAAAATATCTCCGTCGAGTTTTCATCCCCATCATCTTCCAACTACAAGAGCATCAAAGATCTTGGTCCGCCTCAACTAGCTGGAAAGAAAGTGCTTAAGCAGTACCTGACGGAGTTCATGTCTACCAGACTTGGCGTGAGGCGTGAATCGAAAATCCTTTCCACTTCTTCAAGAGTTGCTGATGATGGGAAGCTTTATTATCAAATTGAGGTGAACATAAAATCATACGCAAACAACAACGAGCTGGCTGTTATGCCGAAGGATCGATTAGTTCGTTTGGAATGGGACAGGCGGTACCTTTCGGTTCTAGGAGTCGAAAACAACCAGTTATACGAGTTGAGATTACAGACACCGGAAAATGTGTTCGTGGAAGAAGAAAGTGATCTTCGCCGGGTTATGGAGTCCTTCAGAGTGAACACGATTGCTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009543 GO:0009570 GO:0009579 GO:0009987 GO:0015979 GO:0016020 GO:0016043 GO:0019684 GO:0022607 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048564 GO:0055035 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PsbP

Protein Analysis

307

Amino Acids

34.84

Weight (kDa)

9.38

Isoelectric Point (pI)

52.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PsbP	PF01789	125 - 301	2.1e-39	PsbP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007216)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15510 AT4G15510 AT4G15510 AT4G15510 AT4G15510
fragaria_vesca	FvH4_6g07900 FvH4_6g07900 FvH4_6g07900 FvH4_6g07900
malus_domestica	MD04G1191200.v1.1 MD12G1203800.v1.1
prunus_persica	Prupe.6G309700_v2.0.a1 Prupe.6G309700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0457591
rosa_laevigata	RLG00000025207
rosa_multiflora	Rmu_sc0005321.1_g000005
rosa_roxburghii	Rroxscaffold_6G00421700
rosa_rugosa	Rorug03G0021700 Rorug03G0021800 Rorug03G0021900
rosa_samantha	Rh3AG082300 Rh3BG084600 Rh3CG084800 Rh3DG086000
rosa_wichuraiana	Rw3G007070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	783
AccB1I	GGYRCC	3 cut(s)	80, 446, 783
AccI	GTMKAC	1 cut(s)	611
AciI	CCGC	2 cut(s)	557, 781
AclWI	GGATC	3 cut(s)	427, 440, 759
AcsI	RAATTY	1 cut(s)	171
AcuI	CTGAAG	3 cut(s)	215, 451, 880
AcyI	GRCGYC	1 cut(s)	447
AfaI	GTAC	4 cut(s)	110, 419, 593, 785
AfiI	CCNNNNNNNGG	1 cut(s)	886
AflII	CTTAAG	1 cut(s)	584
AflIII	ACRYGT	1 cut(s)	145
AgsI	TTSAA	4 cut(s)	76, 258, 415, 660
AloI	GAACNNNNNNTCC	2 cut(s)	836, 868
AluBI	AGCT	4 cut(s)	314, 569, 682, 733
AluI	AGCT	4 cut(s)	314, 569, 682, 733
Alw21I	GWGCWC	1 cut(s)	216
Alw26I	GTCTC	4 cut(s)	25, 324, 369, 465
AlwI	GGATC	3 cut(s)	427, 440, 759
AlwNI	CAGNNNCTG	1 cut(s)	595
AoxI	GGCC	1 cut(s)	297
ApeKI	GCWGC	4 cut(s)	22, 25, 152, 347
ApoI	RAATTY	1 cut(s)	171
Asp718I	GGTACC	1 cut(s)	783
AspA2I	CCTAGG	1 cut(s)	281
AspLEI	GCGC	1 cut(s)	449
AspS9I	GGNCC	1 cut(s)	554
AsuC2I	CCSGG	1 cut(s)	881
AsuHPI	GGTGA	2 cut(s)	39, 712
AvaII	GGWCC	1 cut(s)	554
AvrII	CCTAGG	1 cut(s)	281
BamHI	GGATCC	1 cut(s)	432
BanI	GGYRCC	3 cut(s)	80, 446, 783
BbsI	GAAGAC	1 cut(s)	203
Bbv12I	GWGCWC	1 cut(s)	216
BbvI	GCAGC	4 cut(s)	34, 37, 164, 334
BccI	CCATC	4 cut(s)	179, 395, 526, 668
BcnI	CCSGG	1 cut(s)	881
BcoDI	GTCTC	4 cut(s)	25, 324, 369, 465
BfaI	CTAG	3 cut(s)	282, 566, 797
BfoI	RGCGCY	1 cut(s)	450
BfrI	CTTAAG	1 cut(s)	584
BglII	AGATCT	1 cut(s)	547
BisI	GCNGC	4 cut(s)	23, 26, 153, 348
BlnI	CCTAGG	1 cut(s)	281
BlpI	GCTNAGC	1 cut(s)	357
BlsI	GCNGC	4 cut(s)	24, 27, 154, 349
Bme1390I	CCNGG	1 cut(s)	881
Bme18I	GGWCC	1 cut(s)	554
BmgT120I	GGNCC	1 cut(s)	554
BmiI	GGNNCC	4 cut(s)	82, 434, 448, 785
BmrFI	CCNGG	1 cut(s)	881
BmsI	GCATC	2 cut(s)	164, 549
BpiI	GAAGAC	1 cut(s)	203
BpmI	CTGGAG	1 cut(s)	89
Bpu1102I	GCTNAGC	1 cut(s)	357
BpuMI	CCSGG	1 cut(s)	881
Bsa29I	ATCGAT	2 cut(s)	203, 754
BsaHI	GRCGYC	1 cut(s)	447
BsaI	GGTCTC	1 cut(s)	465
BsaJI	CCNNGG	1 cut(s)	281
BsaWI	WCCGGW	1 cut(s)	841
BsaXI	ACNNNNNCTCC	2 cut(s)	593, 623
Bsc4I	CCNNNNNNNGG	1 cut(s)	886
Bse1I	ACTGG	3 cut(s)	106, 434, 814
Bse3DI	GCAATG	1 cut(s)	300
BseCI	ATCGAT	2 cut(s)	203, 754
BseDI	CCNNGG	1 cut(s)	281
BseGI	GGATG	2 cut(s)	190, 512
BseLI	CCNNNNNNNGG	1 cut(s)	886
BseMI	GCAATG	1 cut(s)	300
BseMII	CTCAG	2 cut(s)	83, 371
BseNI	ACTGG	3 cut(s)	106, 434, 814
BseRI	GAGGAG	1 cut(s)	87
BseXI	GCAGC	4 cut(s)	34, 37, 164, 334
BsgI	GTGCAG	1 cut(s)	41
BshFI	GGCC	1 cut(s)	299
BshNI	GGYRCC	3 cut(s)	80, 446, 783
BshVI	ATCGAT	2 cut(s)	203, 754
BsiHKAI	GWGCWC	1 cut(s)	216
BsiSI	CCGG	4 cut(s)	327, 450, 842, 880
BslFI	GGGAC	1 cut(s)	788
BslI	CCNNNNNNNGG	1 cut(s)	886
BsmAI	GTCTC	4 cut(s)	25, 324, 369, 465
BsmFI	GGGAC	1 cut(s)	788
BsmI	GAATGC	1 cut(s)	295
BsnI	GGCC	1 cut(s)	299
Bso31I	GGTCTC	1 cut(s)	465
Bsp1286I	GDGCHC	1 cut(s)	216
Bsp143I	GATC	4 cut(s)	432, 547, 751, 871
Bsp1720I	GCTNAGC	1 cut(s)	357
BspACI	CCGC	2 cut(s)	557, 781
BspANI	GGCC	1 cut(s)	299
BspCNI	CTCAG	2 cut(s)	82, 370
BspDI	ATCGAT	2 cut(s)	203, 754
BspLI	GGNNCC	4 cut(s)	82, 434, 448, 785
BspPI	GGATC	3 cut(s)	427, 440, 759
BspT107I	GGYRCC	3 cut(s)	80, 446, 783
BspTI	CTTAAG	1 cut(s)	584
BspTNI	GGTCTC	1 cut(s)	465
BsrDI	GCAATG	1 cut(s)	300
BsrI	ACTGG	3 cut(s)	106, 434, 814
BssECI	CCNNGG	1 cut(s)	281
BssMI	GATC	4 cut(s)	432, 547, 751, 871
BssNI	GRCGYC	1 cut(s)	447
BssT1I	CCWWGG	1 cut(s)	281
Bst4CI	ACNGT	1 cut(s)	335
Bst6I	CTCTTC	1 cut(s)	64
BstACI	GRCGYC	1 cut(s)	447
BstAFI	CTTAAG	1 cut(s)	584
BstAPI	GCANNNNNTGC	1 cut(s)	161
BstC8I	GCNNGC	1 cut(s)	735
BstDEI	CTNAG	3 cut(s)	69, 357, 423
BstF5I	GGATG	2 cut(s)	190, 512
BstH2I	RGCGCY	1 cut(s)	450
BstHHI	GCGC	1 cut(s)	449
BstKTI	GATC	4 cut(s)	435, 550, 754, 874
BstMAI	GTCTC	4 cut(s)	25, 324, 369, 465
BstMBI	GATC	4 cut(s)	432, 547, 751, 871
BstMWI	GCNNNNNNNGC	2 cut(s)	161, 353
BstNSI	RCATGY	1 cut(s)	149
BstSCI	CCNGG	1 cut(s)	879
BstV1I	GCAGC	4 cut(s)	34, 37, 164, 334
BstV2I	GAAGAC	1 cut(s)	203
BstX2I	RGATCY	2 cut(s)	432, 547
BstYI	RGATCY	2 cut(s)	432, 547
Bsu15I	ATCGAT	2 cut(s)	203, 754
BsuRI	GGCC	1 cut(s)	299
BsuTUI	ATCGAT	2 cut(s)	203, 754
BtsCI	GGATG	2 cut(s)	190, 512
Cac8I	GCNNGC	1 cut(s)	735
CaiI	CAGNNNCTG	1 cut(s)	595
CfoI	GCGC	1 cut(s)	449
Cfr13I	GGNCC	1 cut(s)	554
ClaI	ATCGAT	2 cut(s)	203, 754
Csp6I	GTAC	4 cut(s)	109, 418, 592, 784
CspCI	CAANNNNNGTGG	1 cut(s)	29
CviAII	CATG	2 cut(s)	146, 607
CviJI	RGCY	7 cut(s)	130, 299, 314, 569, 682, 733, 737
CviKI_1	RGCY	7 cut(s)	130, 299, 314, 569, 682, 733, 737
CviQI	GTAC	4 cut(s)	109, 418, 592, 784
DdeI	CTNAG	3 cut(s)	69, 357, 423
DinI	GGCGCC	1 cut(s)	448
DpnI	GATC	4 cut(s)	434, 549, 753, 873
DpnII	GATC	4 cut(s)	432, 547, 751, 871
Eam1104I	CTCTTC	1 cut(s)	64
EarI	CTCTTC	1 cut(s)	64
EciI	GGCGGA	1 cut(s)	546
Eco130I	CCWWGG	1 cut(s)	281
Eco31I	GGTCTC	1 cut(s)	465
Eco47I	GGWCC	1 cut(s)	554
Eco57I	CTGAAG	3 cut(s)	215, 451, 880
EcoT14I	CCWWGG	1 cut(s)	281
EgeI	GGCGCC	1 cut(s)	448
EheI	GGCGCC	1 cut(s)	448
ErhI	CCWWGG	1 cut(s)	281
FaeI	CATG	2 cut(s)	149, 610
FaiI	YATR	9 cut(s)	147, 389, 461, 608, 707, 715, 743, 820, 887
FaqI	GGGAC	1 cut(s)	788
FatI	CATG	2 cut(s)	145, 606
FblI	GTMKAC	1 cut(s)	611
Fnu4HI	GCNGC	4 cut(s)	23, 26, 153, 348
FokI	GGATG	2 cut(s)	197, 499
Fsp4HI	GCNGC	4 cut(s)	23, 26, 153, 348
FspBI	CTAG	3 cut(s)	282, 566, 797
GlaI	GCGC	1 cut(s)	448
GluI	GCNGC	4 cut(s)	23, 26, 153, 348
GsuI	CTGGAG	1 cut(s)	89
HaeII	RGCGCY	1 cut(s)	450
HaeIII	GGCC	1 cut(s)	299
HapII	CCGG	4 cut(s)	327, 450, 842, 880
HhaI	GCGC	1 cut(s)	449
Hin1I	GRCGYC	1 cut(s)	447
Hin1II	CATG	2 cut(s)	149, 610
Hin6I	GCGC	1 cut(s)	447
HinP1I	GCGC	1 cut(s)	447
HindIII	AAGCTT	1 cut(s)	680
HinfI	GANTC	6 cut(s)	87, 227, 239, 635, 801, 890
HpaII	CCGG	4 cut(s)	327, 450, 842, 880
HphI	GGTGA	2 cut(s)	39, 712
Hpy166II	GTNNAC	3 cut(s)	612, 703, 904
Hpy188I	TCNGA	5 cut(s)	211, 232, 342, 470, 899
Hpy188III	TCNNGA	2 cut(s)	485, 660
Hpy8I	GTNNAC	3 cut(s)	612, 703, 904
Hpy99I	CGWCG	1 cut(s)	506
HpyAV	CCTTC	3 cut(s)	48, 742, 904
HpyCH4III	ACNGT	1 cut(s)	335
HpyCH4V	TGCA	6 cut(s)	22, 152, 164, 275, 293, 350
HpyF10VI	GCNNNNNNNGC	2 cut(s)	161, 353
HpyF3I	CTNAG	3 cut(s)	69, 357, 423
Hsp92I	GRCGYC	1 cut(s)	447
Hsp92II	CATG	2 cut(s)	149, 610
HspAI	GCGC	1 cut(s)	447
KasI	GGCGCC	1 cut(s)	446
KpnI	GGTACC	1 cut(s)	787
Kzo9I	GATC	4 cut(s)	432, 547, 751, 871
LmnI	GCTCC	1 cut(s)	452
Lsp1109I	GCAGC	4 cut(s)	34, 37, 164, 334
LweI	GCATC	2 cut(s)	164, 549
MaeI	CTAG	3 cut(s)	282, 566, 797
MalI	GATC	4 cut(s)	434, 549, 753, 873
MboI	GATC	4 cut(s)	432, 547, 751, 871
MflI	RGATCY	2 cut(s)	432, 547
MhlI	GDGCHC	1 cut(s)	216
MluCI	AATT	2 cut(s)	171, 693
Mly113I	GGCGCC	1 cut(s)	447
MlyI	GAGTC	3 cut(s)	81, 810, 899
MmeI	TCCRAC	1 cut(s)	552
MnlI	CCTC	8 cut(s)	60, 67, 108, 215, 279, 570, 621, 691
MseI	TTAA	3 cut(s)	302, 377, 585
MspCI	CTTAAG	1 cut(s)	584
MspI	CCGG	4 cut(s)	327, 450, 842, 880
MspR9I	CCNGG	1 cut(s)	881
Mva1269I	GAATGC	1 cut(s)	295
MwoI	GCNNNNNNNGC	2 cut(s)	161, 353
NarI	GGCGCC	1 cut(s)	447
NciI	CCSGG	1 cut(s)	881
NdeII	GATC	4 cut(s)	432, 547, 751, 871
NlaIII	CATG	2 cut(s)	149, 610
NlaIV	GGNNCC	4 cut(s)	82, 434, 448, 785
NspI	RCATGY	1 cut(s)	149
PciI	ACATGT	1 cut(s)	145
PcsI	WCGNNNNNNNCGW	1 cut(s)	760
PctI	GAATGC	1 cut(s)	295
PfeI	GAWTC	3 cut(s)	227, 239, 635
PkrI	GCNGC	4 cut(s)	24, 27, 154, 349
PleI	GAGTC	3 cut(s)	81, 809, 898
PluTI	GGCGCC	1 cut(s)	450
PpsI	GAGTC	3 cut(s)	81, 809, 898
PscI	ACATGT	1 cut(s)	145
PspN4I	GGNNCC	4 cut(s)	82, 434, 448, 785
PspPI	GGNCC	1 cut(s)	554
PstNI	CAGNNNCTG	1 cut(s)	595
PsuI	RGATCY	2 cut(s)	432, 547
RsaI	GTAC	4 cut(s)	110, 419, 593, 785
RsaNI	GTAC	4 cut(s)	109, 418, 592, 784
SaqAI	TTAA	3 cut(s)	302, 377, 585
SatI	GCNGC	4 cut(s)	23, 26, 153, 348
Sau3AI	GATC	4 cut(s)	432, 547, 751, 871
Sau96I	GGNCC	1 cut(s)	554
SchI	GAGTC	3 cut(s)	81, 810, 899
ScrFI	CCNGG	1 cut(s)	881
SduI	GDGCHC	1 cut(s)	216
SfaNI	GCATC	2 cut(s)	164, 549
SfoI	GGCGCC	1 cut(s)	448
SinI	GGWCC	1 cut(s)	554
SmlI	CTYRAG	1 cut(s)	584
SmoI	CTYRAG	1 cut(s)	584
Sse9I	AATT	2 cut(s)	171, 693
SsiI	CCGC	2 cut(s)	557, 781
SspDI	GGCGCC	1 cut(s)	446
SspMI	CTAG	3 cut(s)	282, 566, 797
StyD4I	CCNGG	1 cut(s)	879
StyI	CCWWGG	1 cut(s)	281
TaaI	ACNGT	1 cut(s)	335
TaqI	TCGA	7 cut(s)	203, 220, 486, 504, 638, 754, 804
TasI	AATT	2 cut(s)	171, 693
TatI	WGTACW	1 cut(s)	108
TfiI	GAWTC	3 cut(s)	227, 239, 635
Tru1I	TTAA	3 cut(s)	302, 377, 585
Tru9I	TTAA	3 cut(s)	302, 377, 585
TseI	GCWGC	4 cut(s)	22, 25, 152, 347
TspDTI	ATGAA	3 cut(s)	501, 504, 595
TspGWI	ACGGA	2 cut(s)	490, 614
Vha464I	CTTAAG	1 cut(s)	584
VpaK11BI	GGWCC	1 cut(s)	554
XapI	RAATTY	1 cut(s)	171
XceI	RCATGY	1 cut(s)	149
XmaJI	CCTAGG	1 cut(s)	281
XmiI	GTMKAC	1 cut(s)	611
XspI	CTAG	3 cut(s)	282, 566, 797

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.