Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0007216

Physical Location & Seq

Genomic Coordinates Reverse (-)

27812711 .. 27814788

Gene Structure 2078 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G309700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGCAAGGTTGGTGGTAGTGCAGCATCAGCAGCAGAGACAACCTTCTCTCTCTCCTCTCCGTTCTTCTCTCTCTGACTTCAGTGGCACCAGACTCCACACTCAACTCCAGTATAGGAGAAAGGTATCACAGCCAAAAGAAGCATTACATGTTACAGCATCAAATGCAAAGAAGAGTCTTACAGTGGGTGGCATCCAATCCATTGGCGTGTTCTTGTCAAGACTTTTCGTCAAAGACGGTCTTCAGCTGAGTTTGCTTAGCAGACCAAGAACACCCATCACAGAGCAATTGTCAGGTGAATCAAATAAGGATTGTGCTTATTTTTCTTCAAAGACTAAAGAATTTGCAGTTCCTAGGAGGAATGCAATGGCCTTAATCTTGTCATCTTACATCTTCTCTGGAGTCAGTTTTCAGAGTGTTGCATTTGCTCAACAATCTGTTATTGGGTTAAGGGAATACATAGATAGTTTTGATGGGTATTCATTCAAGTACCCTTCAAACTGGATCCAAGTCCGAGGTGCTGGAGCAGACATATTCTTTAGAGACCCTTATGTTCTTGATGAAAATATCTCTGTGGAGTTTTCCTCTCCTTCATCCTCCAACTACAAGAGCGTGGAAGATCTTGGTCCGCCTCAAGAAGCCGGAAAGAAAGTACTTAAGCAGTACCTGACAGAGTTCATGTCTACAAGACTTGGCGTGAGGCGCGAATCAAAAATTCTTTCCACATCTTCAAGAATTGCTGATGATGGGAAGCTTTATTATCAAGTCGAGGTAAACATAAAATCATATGCAAACAACAACGAGCTGGCTGTTATGCCGAAAGACCGATTAGTTCGCATGGAATGGGACAGACGGTACCTTTCTGTCCTAGGAGTTGAAAACAGTCAGTTATACGAGTTGAGATTGCAAACACCAGAAAATGTGTTTGTGGAAGAAGAAAGTGATCTTCGCCGGGTTATGGAGTCCTTCAGAGTGAACAAGATTGCTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009543 GO:0009570 GO:0009579 GO:0009987 GO:0015979 GO:0016020 GO:0016043 GO:0019684 GO:0022607 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048564 GO:0055035 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PsbP

Protein Analysis

331

Amino Acids

37.47

Weight (kDa)

9.46

Isoelectric Point (pI)

56.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007216)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15510 AT4G15510 AT4G15510 AT4G15510 AT4G15510
fragaria_vesca	FvH4_6g07900 FvH4_6g07900 FvH4_6g07900 FvH4_6g07900
malus_domestica	MD04G1191200.v1.1 MD12G1203800.v1.1
prunus_persica	Prupe.6G309700_v2.0.a1 Prupe.6G309700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0457591
rosa_laevigata	RLG00000025207
rosa_multiflora	Rmu_sc0005321.1_g000005
rosa_roxburghii	Rroxscaffold_6G00421700
rosa_rugosa	Rorug03G0021700 Rorug03G0021800 Rorug03G0021900
rosa_samantha	Rh3AG082300 Rh3BG084600 Rh3CG084800 Rh3DG086000
rosa_wichuraiana	Rw3G007070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	855
AccB1I	GGYRCC	2 cut(s)	86, 855
AccI	GTMKAC	1 cut(s)	683
AccII	CGCG	1 cut(s)	705
AciI	CCGC	1 cut(s)	629
AclWI	GGATC	2 cut(s)	499, 512
AcsI	RAATTY	2 cut(s)	341, 714
AcuI	CTGAAG	3 cut(s)	64, 227, 952
AfaI	GTAC	4 cut(s)	491, 654, 665, 857
AfiI	CCNNNNNNNGG	1 cut(s)	958
AflII	CTTAAG	1 cut(s)	656
AflIII	ACRYGT	1 cut(s)	148
AgsI	TTSAA	5 cut(s)	330, 487, 498, 732, 878
AhdI	GACNNNNNGTC	1 cut(s)	227
AluBI	AGCT	3 cut(s)	247, 754, 805
AluI	AGCT	3 cut(s)	247, 754, 805
Alw26I	GTCTC	2 cut(s)	31, 537
AlwI	GGATC	2 cut(s)	499, 512
AlwNI	CAGNNNCTG	1 cut(s)	667
AoxI	GGCC	1 cut(s)	369
ApeKI	GCWGC	3 cut(s)	22, 31, 986
ApoI	RAATTY	2 cut(s)	341, 714
Asp718I	GGTACC	1 cut(s)	855
AspA2I	CCTAGG	2 cut(s)	353, 868
AspLEI	GCGC	1 cut(s)	705
AspS9I	GGNCC	1 cut(s)	626
AsuC2I	CCSGG	1 cut(s)	953
AsuHPI	GGTGA	1 cut(s)	308
AvaII	GGWCC	1 cut(s)	626
AvrII	CCTAGG	2 cut(s)	353, 868
BamHI	GGATCC	1 cut(s)	504
BanI	GGYRCC	2 cut(s)	86, 855
BbsI	GAAGAC	1 cut(s)	233
BbvI	GCAGC	3 cut(s)	34, 43, 973
BccI	CCATC	3 cut(s)	284, 467, 740
BcnI	CCSGG	1 cut(s)	953
BcoDI	GTCTC	2 cut(s)	31, 537
BfaI	CTAG	2 cut(s)	354, 869
BfrI	CTTAAG	1 cut(s)	656
BglII	AGATCT	1 cut(s)	619
BisI	GCNGC	3 cut(s)	23, 32, 987
BlnI	CCTAGG	2 cut(s)	353, 868
BlpI	GCTNAGC	1 cut(s)	257
BlsI	GCNGC	3 cut(s)	24, 33, 988
BmcAI	AGTACT	1 cut(s)	654
Bme1390I	CCNGG	1 cut(s)	953
Bme18I	GGWCC	1 cut(s)	626
BmeRI	GACNNNNNGTC	1 cut(s)	227
BmgT120I	GGNCC	1 cut(s)	626
BmiI	GGNNCC	3 cut(s)	88, 506, 857
BmrFI	CCNGG	1 cut(s)	953
BmsI	GCATC	3 cut(s)	34, 167, 201
BpiI	GAAGAC	1 cut(s)	233
BplI	GAGNNNNNCTC	2 cut(s)	569, 601
BpmI	CTGGAG	3 cut(s)	92, 420, 543
Bpu1102I	GCTNAGC	1 cut(s)	257
BpuEI	CTTGAG	1 cut(s)	618
BpuMI	CCSGG	1 cut(s)	953
BsaI	GGTCTC	1 cut(s)	537
BsaJI	CCNNGG	3 cut(s)	353, 514, 868
Bsc4I	CCNNNNNNNGG	1 cut(s)	958
Bse1I	ACTGG	2 cut(s)	109, 506
Bse3DI	GCAATG	1 cut(s)	372
BseDI	CCNNGG	3 cut(s)	353, 514, 868
BseGI	GGATG	2 cut(s)	192, 593
BseLI	CCNNNNNNNGG	1 cut(s)	958
BseMI	GCAATG	1 cut(s)	372
BseMII	CTCAG	1 cut(s)	239
BseNI	ACTGG	2 cut(s)	109, 506
BseRI	GAGGAG	1 cut(s)	45
BseXI	GCAGC	3 cut(s)	34, 43, 973
BsgI	GTGCAG	1 cut(s)	41
Bsh1236I	CGCG	1 cut(s)	705
BshFI	GGCC	1 cut(s)	371
BshNI	GGYRCC	2 cut(s)	86, 855
BsiSI	CCGG	2 cut(s)	642, 952
BslFI	GGGAC	1 cut(s)	860
BslI	CCNNNNNNNGG	1 cut(s)	958
BsmAI	GTCTC	2 cut(s)	31, 537
BsmFI	GGGAC	1 cut(s)	860
BsmI	GAATGC	1 cut(s)	367
BsnI	GGCC	1 cut(s)	371
Bso31I	GGTCTC	1 cut(s)	537
Bsp143I	GATC	3 cut(s)	504, 619, 943
Bsp1720I	GCTNAGC	1 cut(s)	257
BspACI	CCGC	1 cut(s)	629
BspANI	GGCC	1 cut(s)	371
BspCNI	CTCAG	1 cut(s)	240
BspFNI	CGCG	1 cut(s)	705
BspLI	GGNNCC	3 cut(s)	88, 506, 857
BspPI	GGATC	2 cut(s)	499, 512
BspT107I	GGYRCC	2 cut(s)	86, 855
BspTI	CTTAAG	1 cut(s)	656
BspTNI	GGTCTC	1 cut(s)	537
BsrDI	GCAATG	1 cut(s)	372
BsrI	ACTGG	2 cut(s)	109, 506
BssECI	CCNNGG	3 cut(s)	353, 514, 868
BssMI	GATC	3 cut(s)	504, 619, 943
BssT1I	CCWWGG	2 cut(s)	353, 868
Bst4CI	ACNGT	4 cut(s)	184, 239, 855, 884
Bst6I	CTCTTC	1 cut(s)	167
BstAFI	CTTAAG	1 cut(s)	656
BstAPI	GCANNNNNTGC	1 cut(s)	164
BstC8I	GCNNGC	1 cut(s)	807
BstDEI	CTNAG	3 cut(s)	248, 257, 990
BstF5I	GGATG	2 cut(s)	192, 593
BstFNI	CGCG	1 cut(s)	705
BstHHI	GCGC	1 cut(s)	705
BstKTI	GATC	3 cut(s)	507, 622, 946
BstMAI	GTCTC	2 cut(s)	31, 537
BstMBI	GATC	3 cut(s)	504, 619, 943
BstMWI	GCNNNNNNNGC	5 cut(s)	28, 31, 164, 253, 702
BstNSI	RCATGY	1 cut(s)	152
BstSCI	CCNGG	1 cut(s)	951
BstUI	CGCG	1 cut(s)	705
BstV1I	GCAGC	3 cut(s)	34, 43, 973
BstV2I	GAAGAC	1 cut(s)	233
BstX2I	RGATCY	2 cut(s)	504, 619
BstXI	CCANNNNNNTGG	1 cut(s)	203
BstYI	RGATCY	2 cut(s)	504, 619
BsuRI	GGCC	1 cut(s)	371
BtsCI	GGATG	2 cut(s)	192, 593
BtsIMutI	CAGTG	2 cut(s)	88, 189
Cac8I	GCNNGC	1 cut(s)	807
CaiI	CAGNNNCTG	1 cut(s)	667
CfoI	GCGC	1 cut(s)	705
Cfr13I	GGNCC	1 cut(s)	626
Csp6I	GTAC	4 cut(s)	490, 653, 664, 856
CspCI	CAANNNNNGTGG	1 cut(s)	29
CviAII	CATG	3 cut(s)	149, 679, 838
CviJI	RGCY	7 cut(s)	133, 247, 371, 641, 754, 805, 809
CviKI_1	RGCY	7 cut(s)	133, 247, 371, 641, 754, 805, 809
CviQI	GTAC	4 cut(s)	490, 653, 664, 856
DdeI	CTNAG	3 cut(s)	248, 257, 990
DpnI	GATC	3 cut(s)	506, 621, 945
DpnII	GATC	3 cut(s)	504, 619, 943
DriI	GACNNNNNGTC	1 cut(s)	227
Eam1104I	CTCTTC	1 cut(s)	167
Eam1105I	GACNNNNNGTC	1 cut(s)	227
EarI	CTCTTC	1 cut(s)	167
EciI	GGCGGA	1 cut(s)	618
Eco130I	CCWWGG	2 cut(s)	353, 868
Eco31I	GGTCTC	1 cut(s)	537
Eco47I	GGWCC	1 cut(s)	626
Eco57I	CTGAAG	3 cut(s)	64, 227, 952
EcoT14I	CCWWGG	2 cut(s)	353, 868
ErhI	CCWWGG	2 cut(s)	353, 868
FaeI	CATG	3 cut(s)	152, 682, 841
FalI	AAGNNNNNCTT	2 cut(s)	225, 257
FaqI	GGGAC	1 cut(s)	860
FatI	CATG	3 cut(s)	148, 678, 837
FauNDI	CATATG	1 cut(s)	787
FblI	GTMKAC	1 cut(s)	683
Fnu4HI	GCNGC	3 cut(s)	23, 32, 987
FokI	GGATG	2 cut(s)	179, 580
Fsp4HI	GCNGC	3 cut(s)	23, 32, 987
FspBI	CTAG	2 cut(s)	354, 869
GlaI	GCGC	1 cut(s)	704
GluI	GCNGC	3 cut(s)	23, 32, 987
GsuI	CTGGAG	3 cut(s)	92, 420, 543
HaeIII	GGCC	1 cut(s)	371
HapII	CCGG	2 cut(s)	642, 952
HhaI	GCGC	1 cut(s)	705
Hin1II	CATG	3 cut(s)	152, 682, 841
Hin6I	GCGC	1 cut(s)	703
HinP1I	GCGC	1 cut(s)	703
HindIII	AAGCTT	1 cut(s)	752
HinfI	GANTC	6 cut(s)	93, 175, 299, 402, 707, 962
HpaII	CCGG	2 cut(s)	642, 952
HphI	GGTGA	1 cut(s)	308
Hpy166II	GTNNAC	3 cut(s)	684, 775, 976
Hpy188I	TCNGA	4 cut(s)	76, 414, 515, 971
Hpy188III	TCNNGA	5 cut(s)	219, 399, 557, 635, 732
Hpy8I	GTNNAC	3 cut(s)	684, 775, 976
HpyAV	CCTTC	4 cut(s)	54, 504, 600, 976
HpyCH4III	ACNGT	4 cut(s)	184, 239, 855, 884
HpyCH4V	TGCA	7 cut(s)	22, 167, 347, 365, 422, 791, 907
HpyF10VI	GCNNNNNNNGC	5 cut(s)	28, 31, 164, 253, 702
HpyF3I	CTNAG	3 cut(s)	248, 257, 990
Hsp92II	CATG	3 cut(s)	152, 682, 841
HspAI	GCGC	1 cut(s)	703
KpnI	GGTACC	1 cut(s)	859
Kzo9I	GATC	3 cut(s)	504, 619, 943
LmnI	GCTCC	1 cut(s)	524
Lsp1109I	GCAGC	3 cut(s)	34, 43, 973
LweI	GCATC	3 cut(s)	34, 167, 201
MaeI	CTAG	2 cut(s)	354, 869
MaeIII	GTNAC	1 cut(s)	151
MalI	GATC	3 cut(s)	506, 621, 945
MboI	GATC	3 cut(s)	504, 619, 943
MfeI	CAATTG	1 cut(s)	287
MflI	RGATCY	2 cut(s)	504, 619
MluCI	AATT	4 cut(s)	287, 341, 714, 735
MlyI	GAGTC	4 cut(s)	87, 184, 411, 971
MmeI	TCCRAC	1 cut(s)	624
MnlI	CCTC	8 cut(s)	66, 351, 509, 595, 607, 642, 693, 763
MseI	TTAA	3 cut(s)	374, 449, 657
MslI	CAYNNNNRTG	1 cut(s)	206
MspA1I	CMGCKG	1 cut(s)	247
MspCI	CTTAAG	1 cut(s)	656
MspI	CCGG	2 cut(s)	642, 952
MspR9I	CCNGG	1 cut(s)	953
MunI	CAATTG	1 cut(s)	287
Mva1269I	GAATGC	1 cut(s)	367
MvnI	CGCG	1 cut(s)	705
MwoI	GCNNNNNNNGC	5 cut(s)	28, 31, 164, 253, 702
NciI	CCSGG	1 cut(s)	953
NdeI	CATATG	1 cut(s)	787
NdeII	GATC	3 cut(s)	504, 619, 943
NlaIII	CATG	3 cut(s)	152, 682, 841
NlaIV	GGNNCC	3 cut(s)	88, 506, 857
NspI	RCATGY	1 cut(s)	152
PciI	ACATGT	1 cut(s)	148
PctI	GAATGC	1 cut(s)	367
PfeI	GAWTC	2 cut(s)	299, 707
PkrI	GCNGC	3 cut(s)	24, 33, 988
PleI	GAGTC	4 cut(s)	87, 183, 410, 970
PpsI	GAGTC	4 cut(s)	87, 183, 410, 970
PscI	ACATGT	1 cut(s)	148
PspN4I	GGNNCC	3 cut(s)	88, 506, 857
PspPI	GGNCC	1 cut(s)	626
PstNI	CAGNNNCTG	1 cut(s)	667
PsuI	RGATCY	2 cut(s)	504, 619
PvuII	CAGCTG	1 cut(s)	247
RsaI	GTAC	4 cut(s)	491, 654, 665, 857
RsaNI	GTAC	4 cut(s)	490, 653, 664, 856
RseI	CAYNNNNRTG	1 cut(s)	206
SaqAI	TTAA	3 cut(s)	374, 449, 657
SatI	GCNGC	3 cut(s)	23, 32, 987
Sau3AI	GATC	3 cut(s)	504, 619, 943
Sau96I	GGNCC	1 cut(s)	626
ScaI	AGTACT	1 cut(s)	654
SchI	GAGTC	4 cut(s)	87, 184, 411, 971
ScrFI	CCNGG	1 cut(s)	953
SfaNI	GCATC	3 cut(s)	34, 167, 201
SinI	GGWCC	1 cut(s)	626
SmiMI	CAYNNNNRTG	1 cut(s)	206
SmlI	CTYRAG	2 cut(s)	633, 656
SmoI	CTYRAG	2 cut(s)	633, 656
Sse9I	AATT	4 cut(s)	287, 341, 714, 735
SsiI	CCGC	1 cut(s)	629
SspMI	CTAG	2 cut(s)	354, 869
StyD4I	CCNGG	1 cut(s)	951
StyI	CCWWGG	2 cut(s)	353, 868
TaaI	ACNGT	4 cut(s)	184, 239, 855, 884
TaqI	TCGA	1 cut(s)	768
TaqII	GACCGA	1 cut(s)	840
TasI	AATT	4 cut(s)	287, 341, 714, 735
TatI	WGTACW	1 cut(s)	652
TfiI	GAWTC	2 cut(s)	299, 707
Tru1I	TTAA	3 cut(s)	374, 449, 657
Tru9I	TTAA	3 cut(s)	374, 449, 657
TscAI	CASTG	2 cut(s)	88, 189
TseI	GCWGC	3 cut(s)	22, 31, 986
TspDTI	ATGAA	4 cut(s)	471, 576, 582, 667
TspGWI	ACGGA	1 cut(s)	50
TspRI	CASTG	2 cut(s)	88, 189
Vha464I	CTTAAG	1 cut(s)	656
VpaK11BI	GGWCC	1 cut(s)	626
XapI	RAATTY	2 cut(s)	341, 714
XceI	RCATGY	1 cut(s)	152
XmaJI	CCTAGG	2 cut(s)	353, 868
XmiI	GTMKAC	1 cut(s)	683
XspI	CTAG	2 cut(s)	354, 869
ZrmI	AGTACT	1 cut(s)	654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.