MD04G1191200.v1.1

PsbP domain-containing protein 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0007216
Physical Location & Seq
Reverse (-)
28082064 .. 28083633
1570 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1191200.v1.1.491

Sequence Viewer

Length: 939 bp
ATGGCAAGGTTGGTGGTGGTGCAGCAGCAGAGACAGCCTTCTCTCTCTCCTCTCCCCTCTTCTTTCTCTCACTTCAATGGCACCAGACTCCACGCTCCTCAGCTCCAGTTTAGGAGAAAGGTTTCACAGCCAAAAGAAACATTACATGTTGCAGCATCAAACGCAAAGGAAATTTCCAAAGAACGTAGTCAGATGAGTTTGTTTAGCAGACTGAAGACACCGGTTTCCGAGCACTTTCGACATGATTCAGATAGGGATTGTGTTGAATTTTCCTCAAAGACTAAAGATTTTGCAGTTCCTAGGAGGAATGCAATGGCCTTAATCTTGTCAGCTTACATCTTCACCGGAGGCGGTTTTGGGAGTGCTGCATTTGCTCAGCAGTCTCTTGTAGGGTTAAGAGAATACATAGATACTTTTGATGGATATTCGTTCAAGTACCCTAAGAACTGGATCCAAGTGAAAGGCGCCGGAGCTGACATATTCTTCAGAGACCCTTACATTCTTGATGAAAATATCTCCGTGGAGTTTTCGTCTCCATCATCTTCCAACTACAAGAGCATCGAAGATCTTGGCCCGCCTGCACTAGCCGGAAAGAAAGTGCTTAAGCAGTACCTGACGGAGTTCATGTCTACCAGACTCGGCGTGAGGCGCGAATCCAAAATTCTTTCCACTTCTTCGAGAGTTGCTGATGATGGGAAGCTTTACTATCAAATTGAGGTGAACATAAAATCATATGCAAACAACAACGAGTTGGCTGTCATGCCGAAGGATCGATTAGTTCGTTTGGAATGGGACAGGCGGTACCTTTCGGTTCTAGGAGTCGAAAACAACCAGTTATACGAGTTGAGATTACAGACGCCGGAAAATGTGTTTGTGGAGGAAGAAAGTGATCTTCGCCGGGTTATGGAGTCTTTCAGAGTGAACAAGATTGCTGTTTAG

Protein Analysis

313

Amino Acids

35.64

Weight (kDa)

9.4

Isoelectric Point (pI)

59.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbP PF01789 131 - 307 3.8e-39 PsbP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 801
AccB1I GGYRCC 3 cut(s) 80, 464, 801
AccI GTMKAC 1 cut(s) 629
AccII CGCG 1 cut(s) 651
AciI CCGC 3 cut(s) 351, 575, 799
AclWI GGATC 3 cut(s) 445, 458, 777
AcsI RAATTY 3 cut(s) 171, 266, 660
AcuI CTGAAG 2 cut(s) 233, 469
AcyI GRCGYC 2 cut(s) 465, 857
AfaI GTAC 3 cut(s) 437, 611, 803
AfiI CCNNNNNNNGG 1 cut(s) 904
AflII CTTAAG 1 cut(s) 602
AflIII ACRYGT 1 cut(s) 145
AgeI ACCGGT 1 cut(s) 220
AgsI TTSAA 3 cut(s) 76, 266, 433
AluBI AGCT 4 cut(s) 103, 332, 473, 700
AluI AGCT 4 cut(s) 103, 332, 473, 700
Alw21I GWGCWC 1 cut(s) 234
Alw26I GTCTC 4 cut(s) 25, 387, 483, 537
AlwI GGATC 3 cut(s) 445, 458, 777
AlwNI CAGNNNCTG 1 cut(s) 613
AoxI GGCC 2 cut(s) 315, 571
ApeKI GCWGC 4 cut(s) 22, 25, 152, 365
ApoI RAATTY 3 cut(s) 171, 266, 660
AsiGI ACCGGT 1 cut(s) 220
Asp700I GAANNNNTTC 1 cut(s) 121
Asp718I GGTACC 1 cut(s) 801
AspA2I CCTAGG 1 cut(s) 299
AspLEI GCGC 2 cut(s) 467, 651
AspS9I GGNCC 1 cut(s) 572
AsuC2I CCSGG 1 cut(s) 899
AsuHPI GGTGA 2 cut(s) 334, 730
AvrII CCTAGG 1 cut(s) 299
BamHI GGATCC 1 cut(s) 450
BanI GGYRCC 3 cut(s) 80, 464, 801
BbsI GAAGAC 1 cut(s) 221
Bbv12I GWGCWC 1 cut(s) 234
BbvCI CCTCAGC 1 cut(s) 99
BbvI GCAGC 4 cut(s) 34, 37, 164, 352
BccI CCATC 3 cut(s) 413, 544, 686
BcnI CCSGG 1 cut(s) 899
BcoDI GTCTC 4 cut(s) 25, 387, 483, 537
BfaI CTAG 3 cut(s) 300, 584, 815
BfoI RGCGCY 1 cut(s) 468
BfrI CTTAAG 1 cut(s) 602
BglII AGATCT 1 cut(s) 565
BisI GCNGC 4 cut(s) 23, 26, 153, 366
BlnI CCTAGG 1 cut(s) 299
BlpI GCTNAGC 1 cut(s) 375
BlsI GCNGC 4 cut(s) 24, 27, 154, 367
Bme1390I CCNGG 1 cut(s) 899
BmgT120I GGNCC 1 cut(s) 572
BmiI GGNNCC 4 cut(s) 82, 452, 466, 803
BmrFI CCNGG 1 cut(s) 899
BmsI GCATC 2 cut(s) 164, 567
BpiI GAAGAC 1 cut(s) 221
BpmI CTGGAG 1 cut(s) 89
Bpu10I CCTNAGC 1 cut(s) 99
Bpu1102I GCTNAGC 1 cut(s) 375
BpuMI CCSGG 1 cut(s) 899
Bsa29I ATCGAT 1 cut(s) 772
BsaHI GRCGYC 2 cut(s) 465, 857
BsaI GGTCTC 1 cut(s) 483
BsaJI CCNNGG 2 cut(s) 299, 519
BsaWI WCCGGW 2 cut(s) 220, 344
BsaXI ACNNNNNCTCC 4 cut(s) 515, 545, 611, 641
Bsc4I CCNNNNNNNGG 1 cut(s) 904
Bse118I RCCGGY 1 cut(s) 220
Bse1I ACTGG 3 cut(s) 106, 452, 832
Bse3DI GCAATG 1 cut(s) 318
BseCI ATCGAT 1 cut(s) 772
BseDI CCNNGG 2 cut(s) 299, 519
BseLI CCNNNNNNNGG 1 cut(s) 904
BseMI GCAATG 1 cut(s) 318
BseMII CTCAG 2 cut(s) 113, 389
BseNI ACTGG 3 cut(s) 106, 452, 832
BseRI GAGGAG 2 cut(s) 39, 87
BseXI GCAGC 4 cut(s) 34, 37, 164, 352
BsgI GTGCAG 2 cut(s) 41, 564
Bsh1236I CGCG 1 cut(s) 651
BshFI GGCC 2 cut(s) 317, 573
BshNI GGYRCC 3 cut(s) 80, 464, 801
BshTI ACCGGT 1 cut(s) 220
BshVI ATCGAT 1 cut(s) 772
BsiHKAI GWGCWC 1 cut(s) 234
BsiSI CCGG 6 cut(s) 221, 345, 468, 588, 860, 898
BslFI GGGAC 1 cut(s) 806
BslI CCNNNNNNNGG 1 cut(s) 904
BsmAI GTCTC 4 cut(s) 25, 387, 483, 537
BsmBI CGTCTC 1 cut(s) 537
BsmFI GGGAC 1 cut(s) 806
BsmI GAATGC 1 cut(s) 313
BsnI GGCC 2 cut(s) 317, 573
Bso31I GGTCTC 1 cut(s) 483
Bsp1286I GDGCHC 1 cut(s) 234
Bsp143I GATC 4 cut(s) 450, 565, 769, 889
Bsp1720I GCTNAGC 1 cut(s) 375
BspACI CCGC 3 cut(s) 351, 575, 799
BspANI GGCC 2 cut(s) 317, 573
BspCNI CTCAG 2 cut(s) 112, 388
BspDI ATCGAT 1 cut(s) 772
BspFNI CGCG 1 cut(s) 651
BspLI GGNNCC 4 cut(s) 82, 452, 466, 803
BspPI GGATC 3 cut(s) 445, 458, 777
BspT107I GGYRCC 3 cut(s) 80, 464, 801
BspTI CTTAAG 1 cut(s) 602
BspTNI GGTCTC 1 cut(s) 483
BsrDI GCAATG 1 cut(s) 318
BsrFI RCCGGY 1 cut(s) 220
BsrI ACTGG 3 cut(s) 106, 452, 832
BssAI RCCGGY 1 cut(s) 220
BssECI CCNNGG 2 cut(s) 299, 519
BssMI GATC 4 cut(s) 450, 565, 769, 889
BssNI GRCGYC 2 cut(s) 465, 857
BssT1I CCWWGG 1 cut(s) 299
Bst6I CTCTTC 1 cut(s) 64
BstACI GRCGYC 2 cut(s) 465, 857
BstAFI CTTAAG 1 cut(s) 602
BstC8I GCNNGC 2 cut(s) 575, 579
BstDEI CTNAG 3 cut(s) 99, 375, 441
BstDSI CCRYGG 1 cut(s) 519
BstFNI CGCG 1 cut(s) 651
BstH2I RGCGCY 1 cut(s) 468
BstHHI GCGC 2 cut(s) 467, 651
BstKTI GATC 4 cut(s) 453, 568, 772, 892
BstMAI GTCTC 4 cut(s) 25, 387, 483, 537
BstMBI GATC 4 cut(s) 450, 565, 769, 889
BstMWI GCNNNNNNNGC 4 cut(s) 34, 161, 371, 648
BstNSI RCATGY 1 cut(s) 149
BstSCI CCNGG 1 cut(s) 897
BstUI CGCG 1 cut(s) 651
BstV1I GCAGC 4 cut(s) 34, 37, 164, 352
BstV2I GAAGAC 1 cut(s) 221
BstX2I RGATCY 2 cut(s) 450, 565
BstYI RGATCY 2 cut(s) 450, 565
Bsu15I ATCGAT 1 cut(s) 772
BsuRI GGCC 2 cut(s) 317, 573
BsuTUI ATCGAT 1 cut(s) 772
BtgI CCRYGG 1 cut(s) 519
Cac8I GCNNGC 2 cut(s) 575, 579
CaiI CAGNNNCTG 1 cut(s) 613
CfoI GCGC 2 cut(s) 467, 651
Cfr10I RCCGGY 1 cut(s) 220
Cfr13I GGNCC 1 cut(s) 572
ClaI ATCGAT 1 cut(s) 772
CseI GACGC 1 cut(s) 865
Csp6I GTAC 3 cut(s) 436, 610, 802
CspAI ACCGGT 1 cut(s) 220
CspCI CAANNNNNGTGG 1 cut(s) 29
CviAII CATG 4 cut(s) 146, 242, 625, 760
CviQI GTAC 3 cut(s) 436, 610, 802
DdeI CTNAG 3 cut(s) 99, 375, 441
DinI GGCGCC 1 cut(s) 466
DpnI GATC 4 cut(s) 452, 567, 771, 891
DpnII GATC 4 cut(s) 450, 565, 769, 889
Eam1104I CTCTTC 1 cut(s) 64
EarI CTCTTC 1 cut(s) 64
Eco130I CCWWGG 1 cut(s) 299
Eco31I GGTCTC 1 cut(s) 483
Eco57I CTGAAG 2 cut(s) 233, 469
EcoT14I CCWWGG 1 cut(s) 299
EgeI GGCGCC 1 cut(s) 466
EheI GGCGCC 1 cut(s) 466
ErhI CCWWGG 1 cut(s) 299
Esp3I CGTCTC 1 cut(s) 537
FaeI CATG 4 cut(s) 149, 245, 628, 763
FaqI GGGAC 1 cut(s) 806
FatI CATG 4 cut(s) 145, 241, 624, 759
FauI CCCGC 1 cut(s) 582
FauNDI CATATG 1 cut(s) 733
FblI GTMKAC 1 cut(s) 629
Fnu4HI GCNGC 4 cut(s) 23, 26, 153, 366
Fsp4HI GCNGC 4 cut(s) 23, 26, 153, 366
FspBI CTAG 3 cut(s) 300, 584, 815
GlaI GCGC 2 cut(s) 466, 650
GluI GCNGC 4 cut(s) 23, 26, 153, 366
GsuI CTGGAG 1 cut(s) 89
HaeII RGCGCY 1 cut(s) 468
HaeIII GGCC 2 cut(s) 317, 573
HapII CCGG 6 cut(s) 221, 345, 468, 588, 860, 898
HgaI GACGC 1 cut(s) 865
HhaI GCGC 2 cut(s) 467, 651
Hin1I GRCGYC 2 cut(s) 465, 857
Hin1II CATG 4 cut(s) 149, 245, 628, 763
Hin6I GCGC 2 cut(s) 465, 649
HinP1I GCGC 2 cut(s) 465, 649
HindIII AAGCTT 1 cut(s) 698
HinfI GANTC 6 cut(s) 87, 245, 636, 653, 819, 908
HpaII CCGG 6 cut(s) 221, 345, 468, 588, 860, 898
HphI GGTGA 2 cut(s) 334, 730
Hpy166II GTNNAC 3 cut(s) 630, 721, 922
Hpy188I TCNGA 5 cut(s) 192, 229, 250, 488, 917
Hpy188III TCNNGA 2 cut(s) 503, 678
Hpy8I GTNNAC 3 cut(s) 630, 721, 922
HpyAV CCTTC 2 cut(s) 48, 760
HpyCH4IV ACGT 1 cut(s) 184
HpyCH4V TGCA 7 cut(s) 22, 152, 293, 311, 368, 581, 737
HpyF10VI GCNNNNNNNGC 4 cut(s) 34, 161, 371, 648
HpyF3I CTNAG 3 cut(s) 99, 375, 441
HpySE526I ACGT 1 cut(s) 184
Hsp92I GRCGYC 2 cut(s) 465, 857
Hsp92II CATG 4 cut(s) 149, 245, 628, 763
HspAI GCGC 2 cut(s) 465, 649
KasI GGCGCC 1 cut(s) 464
KpnI GGTACC 1 cut(s) 805
Kzo9I GATC 4 cut(s) 450, 565, 769, 889
LmnI GCTCC 3 cut(s) 100, 108, 470
Lsp1109I GCAGC 4 cut(s) 34, 37, 164, 352
LweI GCATC 2 cut(s) 164, 567
MaeI CTAG 3 cut(s) 300, 584, 815
MaeII ACGT 1 cut(s) 184
MalI GATC 4 cut(s) 452, 567, 771, 891
MboI GATC 4 cut(s) 450, 565, 769, 889
MboII GAAGA 9 cut(s) 51, 226, 331, 475, 534, 575, 666, 884, 893
MflI RGATCY 2 cut(s) 450, 565
MhlI GDGCHC 1 cut(s) 234
MluCI AATT 4 cut(s) 171, 266, 660, 711
Mly113I GGCGCC 1 cut(s) 465
MlyI GAGTC 4 cut(s) 81, 630, 828, 917
MmeI TCCRAC 1 cut(s) 570
MnlI CCTC 9 cut(s) 60, 67, 108, 283, 297, 341, 639, 709, 871
MroXI GAANNNNTTC 1 cut(s) 121
MseI TTAA 3 cut(s) 320, 395, 603
MslI CAYNNNNRTG 1 cut(s) 75
MspCI CTTAAG 1 cut(s) 602
MspI CCGG 6 cut(s) 221, 345, 468, 588, 860, 898
MspR9I CCNGG 1 cut(s) 899
Mva1269I GAATGC 1 cut(s) 313
MvnI CGCG 1 cut(s) 651
MwoI GCNNNNNNNGC 4 cut(s) 34, 161, 371, 648
NarI GGCGCC 1 cut(s) 465
NciI CCSGG 1 cut(s) 899
NdeI CATATG 1 cut(s) 733
NdeII GATC 4 cut(s) 450, 565, 769, 889
NlaIII CATG 4 cut(s) 149, 245, 628, 763
NlaIV GGNNCC 4 cut(s) 82, 452, 466, 803
NmeAIII GCCGAG 1 cut(s) 618
NspI RCATGY 1 cut(s) 149
PciI ACATGT 1 cut(s) 145
PcsI WCGNNNNNNNCGW 1 cut(s) 778
PctI GAATGC 1 cut(s) 313
PdmI GAANNNNTTC 1 cut(s) 121
PfeI GAWTC 2 cut(s) 245, 653
PinAI ACCGGT 1 cut(s) 220
PkrI GCNGC 4 cut(s) 24, 27, 154, 367
PleI GAGTC 4 cut(s) 81, 630, 827, 916
PluTI GGCGCC 1 cut(s) 468
PpsI GAGTC 4 cut(s) 81, 630, 827, 916
PscI ACATGT 1 cut(s) 145
PspN4I GGNNCC 4 cut(s) 82, 452, 466, 803
PspPI GGNCC 1 cut(s) 572
PstNI CAGNNNCTG 1 cut(s) 613
PsuI RGATCY 2 cut(s) 450, 565
RsaI GTAC 3 cut(s) 437, 611, 803
RsaNI GTAC 3 cut(s) 436, 610, 802
RseI CAYNNNNRTG 1 cut(s) 75
SaqAI TTAA 3 cut(s) 320, 395, 603
SatI GCNGC 4 cut(s) 23, 26, 153, 366
Sau3AI GATC 4 cut(s) 450, 565, 769, 889
Sau96I GGNCC 1 cut(s) 572
SchI GAGTC 4 cut(s) 81, 630, 828, 917
ScrFI CCNGG 1 cut(s) 899
SduI GDGCHC 1 cut(s) 234
SfaNI GCATC 2 cut(s) 164, 567
SfoI GGCGCC 1 cut(s) 466
SmiMI CAYNNNNRTG 1 cut(s) 75
SmlI CTYRAG 1 cut(s) 602
SmoI CTYRAG 1 cut(s) 602
Sse9I AATT 4 cut(s) 171, 266, 660, 711
SsiI CCGC 3 cut(s) 351, 575, 799
SspDI GGCGCC 1 cut(s) 464
SspMI CTAG 3 cut(s) 300, 584, 815
StyD4I CCNGG 1 cut(s) 897
StyI CCWWGG 1 cut(s) 299
TaiI ACGT 1 cut(s) 187
TaqI TCGA 5 cut(s) 238, 561, 677, 772, 822
TasI AATT 4 cut(s) 171, 266, 660, 711
TfiI GAWTC 2 cut(s) 245, 653
Tru1I TTAA 3 cut(s) 320, 395, 603
Tru9I TTAA 3 cut(s) 320, 395, 603
TseI GCWGC 4 cut(s) 22, 25, 152, 365
TspDTI ATGAA 2 cut(s) 522, 613
TspGWI ACGGA 2 cut(s) 508, 632
Vha464I CTTAAG 1 cut(s) 602
XapI RAATTY 3 cut(s) 171, 266, 660
XceI RCATGY 1 cut(s) 149
XmaJI CCTAGG 1 cut(s) 299
XmiI GTMKAC 1 cut(s) 629
XmnI GAANNNNTTC 1 cut(s) 121
XspI CTAG 3 cut(s) 300, 584, 815
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.