Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0007216

Physical Location & Seq

Genomic Coordinates Reverse (-)

42814519 .. 42817046

Gene Structure 2528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00421700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGCAAGGTTGGTGATGATGCAGCAGCACCAACAGCACAGTCCACCTTCCTTCTCTCCTCTTCCTTCTCTCTCTGGCTTTAATGGCCCCAAACTCCAAACTCAACTCCAGTATAGGAGAAAGGTATCACAGCTAAAAGAAGCATTACATGTTGCAGCGTCATATGTAAAGAAGACTCTTATATTTTCCATCTCTGATACCATATCACCACAATGGCAGGTGAGCCTCACTGAGCAAATGTCAGGTGAATCAAATAAGGGTAGTGCTGATTTTTCGTCCAAGACTAAAGATTTTGCAGTTCCTAGGAGGAATGCAATGGCCTTAATCTTGTCAGGTTGCATCTTCTCACAAGTCAGTTTGCAAAGTCCTGCATTTGCTCAACAATCTGTTGCATTAAGGGAATACATAGATAGTTTTGATGGCTACTCATTCAAGTACCCTAAGAATTGGATTCAAGTCAAAGGAGCTGGAGCTGATATTTTCTTTAGAGACCCTTATATTCTTGATGAAAACCTAGCTGTGGATTTGTCCTCTCCTTCATCCTCGAATTACAAGAGCGTCGAAGATCTGGGTCCGCCAGAAGTAGCCGCAAAGCAAGTGCTTAGGCAGTATCTGACTGAGTTCATGTCTACAAGACTCGGGGTGAAGCGTGAGGGGAAAGTTCTTTCTACATCTTCAAGGGTTGCTGATGATGGGAAACTTTATTACCAAGTTGAGGTGAACATAAAATCATATGCAAGCAACAATGAACTGGCTGTTATGCCGAAAGATCGTGTAGTTAGTATGGAATGGAACAGGAGGTACCTTACTGTTCTTGGAGTTGAAAACAACCAGTTGTATGCGTTGAGATTACAGACACCAGAAAATGTATTTGTGGAAGAAGAAAGTGATCTTCGCCGGGTTATGGAATCATTTAGAGTGAACAAGTTAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009543 GO:0009570 GO:0009579 GO:0009987 GO:0015979 GO:0016020 GO:0016043 GO:0019684 GO:0022607 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048564 GO:0055035 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PsbP

Protein Analysis

311

Amino Acids

35.17

Weight (kDa)

9.08

Isoelectric Point (pI)

57.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PsbP	PF01789	132 - 307	1.2e-36	PsbP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007216)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15510 AT4G15510 AT4G15510 AT4G15510 AT4G15510
fragaria_vesca	FvH4_6g07900 FvH4_6g07900 FvH4_6g07900 FvH4_6g07900
malus_domestica	MD04G1191200.v1.1 MD12G1203800.v1.1
prunus_persica	Prupe.6G309700_v2.0.a1 Prupe.6G309700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0457591
rosa_laevigata	RLG00000025207
rosa_multiflora	Rmu_sc0005321.1_g000005
rosa_roxburghii	Rroxscaffold_6G00421700
rosa_rugosa	Rorug03G0021700 Rorug03G0021800 Rorug03G0021900
rosa_samantha	Rh3AG082300 Rh3BG084600 Rh3CG084800 Rh3DG086000
rosa_wichuraiana	Rw3G007070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	208
Acc36I	ACCTGC	1 cut(s)	208
Acc65I	GGTACC	1 cut(s)	801
AccB1I	GGYRCC	1 cut(s)	801
AccI	GTMKAC	1 cut(s)	629
AciI	CCGC	2 cut(s)	575, 588
AfaI	GTAC	2 cut(s)	437, 803
AfiI	CCNNNNNNNGG	3 cut(s)	520, 715, 904
AflIII	ACRYGT	1 cut(s)	148
AgsI	TTSAA	4 cut(s)	433, 455, 678, 824
AluBI	AGCT	4 cut(s)	133, 467, 473, 518
AluI	AGCT	4 cut(s)	133, 467, 473, 518
Alw26I	GTCTC	1 cut(s)	483
AlwNI	CAGNNNCTG	1 cut(s)	613
Ama87I	CYCGRG	1 cut(s)	638
AoxI	GGCC	2 cut(s)	85, 318
ApeKI	GCWGC	3 cut(s)	22, 25, 155
Asp718I	GGTACC	1 cut(s)	801
AspA2I	CCTAGG	1 cut(s)	302
AspS9I	GGNCC	2 cut(s)	86, 572
AsuC2I	CCSGG	1 cut(s)	899
AsuHPI	GGTGA	6 cut(s)	25, 198, 232, 257, 655, 730
AvaI	CYCGRG	1 cut(s)	638
AvaII	GGWCC	1 cut(s)	572
AvrII	CCTAGG	1 cut(s)	302
BanI	GGYRCC	1 cut(s)	801
BbsI	GAAGAC	1 cut(s)	179
BbvI	GCAGC	3 cut(s)	34, 37, 167
BccI	CCATC	3 cut(s)	197, 413, 686
BcnI	CCSGG	1 cut(s)	899
BcoDI	GTCTC	1 cut(s)	483
BfaI	CTAG	2 cut(s)	303, 515
BfuAI	ACCTGC	1 cut(s)	208
BglII	AGATCT	1 cut(s)	565
BisI	GCNGC	4 cut(s)	23, 26, 156, 588
BlnI	CCTAGG	1 cut(s)	302
BlsI	GCNGC	4 cut(s)	24, 27, 157, 589
Bme1390I	CCNGG	1 cut(s)	899
Bme18I	GGWCC	1 cut(s)	572
BmeT110I	CYCGRG	1 cut(s)	638
BmgT120I	GGNCC	2 cut(s)	86, 572
BmiI	GGNNCC	3 cut(s)	88, 573, 803
BmrFI	CCNGG	1 cut(s)	899
BmsI	GCATC	2 cut(s)	9, 348
BpiI	GAAGAC	1 cut(s)	179
BpmI	CTGGAG	2 cut(s)	92, 489
Bpu10I	CCTNAGC	1 cut(s)	602
BpuMI	CCSGG	1 cut(s)	899
BsaI	GGTCTC	1 cut(s)	483
BsaJI	CCNNGG	1 cut(s)	302
Bsc4I	CCNNNNNNNGG	3 cut(s)	520, 715, 904
Bse1I	ACTGG	3 cut(s)	109, 756, 832
Bse3DI	GCAATG	1 cut(s)	321
BseDI	CCNNGG	1 cut(s)	302
BseGI	GGATG	1 cut(s)	539
BseLI	CCNNNNNNNGG	3 cut(s)	520, 715, 904
BseMI	GCAATG	1 cut(s)	321
BseMII	CTCAG	2 cut(s)	222, 609
BseNI	ACTGG	3 cut(s)	109, 756, 832
BseRI	GAGGAG	1 cut(s)	48
BseXI	GCAGC	3 cut(s)	34, 37, 167
BshFI	GGCC	2 cut(s)	87, 320
BshNI	GGYRCC	1 cut(s)	801
BsiHKCI	CYCGRG	1 cut(s)	638
BsiSI	CCGG	1 cut(s)	898
BslI	CCNNNNNNNGG	3 cut(s)	520, 715, 904
BsmAI	GTCTC	1 cut(s)	483
BsmI	GAATGC	1 cut(s)	316
BsnI	GGCC	2 cut(s)	87, 320
Bso31I	GGTCTC	1 cut(s)	483
BsoBI	CYCGRG	1 cut(s)	638
Bsp143I	GATC	3 cut(s)	565, 769, 889
BspACI	CCGC	2 cut(s)	575, 588
BspANI	GGCC	2 cut(s)	87, 320
BspCNI	CTCAG	2 cut(s)	223, 610
BspLI	GGNNCC	3 cut(s)	88, 573, 803
BspMI	ACCTGC	1 cut(s)	208
BspT107I	GGYRCC	1 cut(s)	801
BspTNI	GGTCTC	1 cut(s)	483
BsrDI	GCAATG	1 cut(s)	321
BsrI	ACTGG	3 cut(s)	109, 756, 832
BssECI	CCNNGG	1 cut(s)	302
BssMI	GATC	3 cut(s)	565, 769, 889
BssT1I	CCWWGG	1 cut(s)	302
Bst4CI	ACNGT	2 cut(s)	41, 811
Bst6I	CTCTTC	1 cut(s)	66
BstC8I	GCNNGC	1 cut(s)	739
BstDEI	CTNAG	4 cut(s)	231, 441, 602, 618
BstF5I	GGATG	1 cut(s)	539
BstKTI	GATC	3 cut(s)	568, 772, 892
BstMAI	GTCTC	1 cut(s)	483
BstMBI	GATC	3 cut(s)	565, 769, 889
BstMWI	GCNNNNNNNGC	2 cut(s)	34, 84
BstNSI	RCATGY	1 cut(s)	152
BstSCI	CCNGG	1 cut(s)	897
BstV1I	GCAGC	3 cut(s)	34, 37, 167
BstV2I	GAAGAC	1 cut(s)	179
BstX2I	RGATCY	1 cut(s)	565
BstYI	RGATCY	1 cut(s)	565
BsuRI	GGCC	2 cut(s)	87, 320
BtsCI	GGATG	1 cut(s)	539
BtsIMutI	CAGTG	1 cut(s)	228
BveI	ACCTGC	1 cut(s)	208
Cac8I	GCNNGC	1 cut(s)	739
CaiI	CAGNNNCTG	1 cut(s)	613
Cfr13I	GGNCC	2 cut(s)	86, 572
CseI	GACGC	2 cut(s)	147, 547
Csp6I	GTAC	2 cut(s)	436, 802
CviAII	CATG	3 cut(s)	149, 625, 933
CviQI	GTAC	2 cut(s)	436, 802
DdeI	CTNAG	4 cut(s)	231, 441, 602, 618
DpnI	GATC	3 cut(s)	567, 771, 891
DpnII	GATC	3 cut(s)	565, 769, 889
Eam1104I	CTCTTC	1 cut(s)	66
EarI	CTCTTC	1 cut(s)	66
EciI	GGCGGA	1 cut(s)	564
Eco130I	CCWWGG	1 cut(s)	302
Eco31I	GGTCTC	1 cut(s)	483
Eco47I	GGWCC	1 cut(s)	572
Eco88I	CYCGRG	1 cut(s)	638
EcoT14I	CCWWGG	1 cut(s)	302
ErhI	CCWWGG	1 cut(s)	302
FaeI	CATG	3 cut(s)	152, 628, 936
FatI	CATG	3 cut(s)	148, 624, 932
FauNDI	CATATG	2 cut(s)	163, 733
FblI	GTMKAC	1 cut(s)	629
Fnu4HI	GCNGC	4 cut(s)	23, 26, 156, 588
FokI	GGATG	1 cut(s)	526
Fsp4HI	GCNGC	4 cut(s)	23, 26, 156, 588
FspBI	CTAG	2 cut(s)	303, 515
GluI	GCNGC	4 cut(s)	23, 26, 156, 588
GsuI	CTGGAG	2 cut(s)	92, 489
HaeIII	GGCC	2 cut(s)	87, 320
HapII	CCGG	1 cut(s)	898
HgaI	GACGC	2 cut(s)	147, 547
Hin1II	CATG	3 cut(s)	152, 628, 936
HincII	GTYRAC	1 cut(s)	930
HindII	GTYRAC	1 cut(s)	930
HinfI	GANTC	5 cut(s)	175, 248, 451, 636, 908
HpaI	GTTAAC	1 cut(s)	930
HpaII	CCGG	1 cut(s)	898
HphI	GGTGA	6 cut(s)	25, 198, 232, 257, 655, 730
Hpy166II	GTNNAC	5 cut(s)	44, 630, 721, 922, 930
Hpy188I	TCNGA	2 cut(s)	196, 615
Hpy188III	TCNNGA	1 cut(s)	503
Hpy8I	GTNNAC	5 cut(s)	44, 630, 721, 922, 930
Hpy99I	CGWCG	1 cut(s)	563
HpyAV	CCTTC	4 cut(s)	57, 61, 75, 546
HpyCH4III	ACNGT	2 cut(s)	41, 811
HpyCH4V	TGCA	9 cut(s)	22, 155, 296, 314, 339, 361, 371, 392, 737
HpyF10VI	GCNNNNNNNGC	2 cut(s)	34, 84
HpyF3I	CTNAG	4 cut(s)	231, 441, 602, 618
Hsp92II	CATG	3 cut(s)	152, 628, 936
KpnI	GGTACC	1 cut(s)	805
KspAI	GTTAAC	1 cut(s)	930
Kzo9I	GATC	3 cut(s)	565, 769, 889
LmnI	GCTCC	2 cut(s)	464, 470
Lsp1109I	GCAGC	3 cut(s)	34, 37, 167
LweI	GCATC	2 cut(s)	9, 348
MaeI	CTAG	2 cut(s)	303, 515
MalI	GATC	3 cut(s)	567, 771, 891
MboI	GATC	3 cut(s)	565, 769, 889
MboII	GAAGA	8 cut(s)	53, 184, 334, 575, 666, 884, 890, 893
MflI	RGATCY	1 cut(s)	565
MluCI	AATT	2 cut(s)	445, 547
MlyI	GAGTC	2 cut(s)	169, 630
MnlI	CCTC	8 cut(s)	69, 236, 300, 541, 553, 646, 709, 792
MseI	TTAA	4 cut(s)	81, 323, 395, 929
MslI	CAYNNNNRTG	1 cut(s)	211
MspI	CCGG	1 cut(s)	898
MspR9I	CCNGG	1 cut(s)	899
Mva1269I	GAATGC	1 cut(s)	316
MwoI	GCNNNNNNNGC	2 cut(s)	34, 84
NciI	CCSGG	1 cut(s)	899
NdeI	CATATG	2 cut(s)	163, 733
NdeII	GATC	3 cut(s)	565, 769, 889
NlaIII	CATG	3 cut(s)	152, 628, 936
NlaIV	GGNNCC	3 cut(s)	88, 573, 803
NspI	RCATGY	1 cut(s)	152
PaqCI	CACCTGC	1 cut(s)	208
PciI	ACATGT	1 cut(s)	148
PctI	GAATGC	1 cut(s)	316
PfeI	GAWTC	3 cut(s)	248, 451, 908
PkrI	GCNGC	4 cut(s)	24, 27, 157, 589
PleI	GAGTC	2 cut(s)	169, 630
PpsI	GAGTC	2 cut(s)	169, 630
PscI	ACATGT	1 cut(s)	148
PspN4I	GGNNCC	3 cut(s)	88, 573, 803
PspPI	GGNCC	2 cut(s)	86, 572
PsrI	GAACNNNNNNTAC	2 cut(s)	785, 817
PstNI	CAGNNNCTG	1 cut(s)	613
PsuI	RGATCY	1 cut(s)	565
RsaI	GTAC	2 cut(s)	437, 803
RsaNI	GTAC	2 cut(s)	436, 802
RseI	CAYNNNNRTG	1 cut(s)	211
SaqAI	TTAA	4 cut(s)	81, 323, 395, 929
SatI	GCNGC	4 cut(s)	23, 26, 156, 588
Sau3AI	GATC	3 cut(s)	565, 769, 889
Sau96I	GGNCC	2 cut(s)	86, 572
SchI	GAGTC	2 cut(s)	169, 630
ScrFI	CCNGG	1 cut(s)	899
SfaNI	GCATC	2 cut(s)	9, 348
SinI	GGWCC	1 cut(s)	572
SmiMI	CAYNNNNRTG	1 cut(s)	211
Sse9I	AATT	2 cut(s)	445, 547
SsiI	CCGC	2 cut(s)	575, 588
SspMI	CTAG	2 cut(s)	303, 515
StyD4I	CCNGG	1 cut(s)	897
StyI	CCWWGG	1 cut(s)	302
TaaI	ACNGT	2 cut(s)	41, 811
TaqI	TCGA	2 cut(s)	545, 561
TasI	AATT	2 cut(s)	445, 547
TauI	GCSGC	1 cut(s)	590
TfiI	GAWTC	3 cut(s)	248, 451, 908
Tru1I	TTAA	4 cut(s)	81, 323, 395, 929
Tru9I	TTAA	4 cut(s)	81, 323, 395, 929
TscAI	CASTG	1 cut(s)	235
TseI	GCWGC	3 cut(s)	22, 25, 155
TspDTI	ATGAA	4 cut(s)	522, 528, 613, 762
TspRI	CASTG	1 cut(s)	235
VpaK11BI	GGWCC	1 cut(s)	572
XceI	RCATGY	1 cut(s)	152
XmaJI	CCTAGG	1 cut(s)	302
XmiI	GTMKAC	1 cut(s)	629
XspI	CTAG	2 cut(s)	303, 515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.