AT4G15545

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0014233
Physical Location & Seq
Forward (+)
8875656 .. 8877799
2144 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G15545.1

Sequence Viewer

Length: 1014 bp
ATGTCAGAGATAGAAGAAGAAGAAGAAGAAGGATCAGCAAGTGCAATTACAGGTTCGAGAAGTTTCGATCTTCCCGATGAACTTCTTCAAGTTCTACCGTCCGATCCATTCGAGCAGCTAGATGTAGCTCGCAAAATCACATCCATTGCTCTCTCGACACGTGTCTCAGCTCTCGAATCAGAGTCGTCGGATCTCCGGGAACTTCTCGCCGAGAAAGAAAAAGAATTTGAAGAACTCCAGTCTCACGTTGAGTCTCTCGAGGCTTCTCTTTCCGATGCGTTTCATAAGCTTTCTCTCGCTGATGGTGAAAAGGAGAATCTGATAAGAGAAAATGCTTCTTTGTCTAATACTGTCAAGAGACTTCAGAGAGATGTCTCAAAGCTTGAGGGTTTTAGGAAGACGCTTATGATGTCTCTTCAAGATGATGACCAAAATGCAGGAACAACGCAAATCATCGCTAAGCCGACACCAAACGATGATGATACTCCATTTCAACCTTCAAGACATTCATCAATCCAATCTCAACAAGCTTCTGAAGCCATTGAACCAGCTGCAACTGACAACGAAAACGATGCTCCTAAACCAAGTTTATCAGCTAGTCTTCCGTTAGTATCACAAACTACTACGCCACGGCTTACTCCTCCTGGTTCTCCACCAATCTTATCTGCTTCTGGTACACCGAAAACAACTTCGAGACCTATCTCTCCTCGACGCCATTCTGTATCGTTCGCTACCACTAGAGGCATGTTTGATGATACTAGATCTTCTATTTCAATCTCAGAGCCTGGTTCACAAACTGCGAGAACTCGGGTTGATGGAAAAGAGTTCTTTCGACAAGTCAGGAGCCGATTATCTTACGAGCAATTTGGTGCATTTCTTGGAAATGTGAAGGATCTTAACGCCCACAAGCAAACAAGAGAAGAAACACTTAGGAAAGCTGAAGAGATATTTGGAGGCGATAACAGAGATCTCTACGTCATATTCGAGGGCTTGATCACACGCAACGCTCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0016020 GO:0022857 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

337

Amino Acids

37.21

Weight (kDa)

4.91

Isoelectric Point (pI)

60.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
At4g15545_C PF25972 270 - 335 8.5e-33 At4g15545-like, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014233)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15545
fragaria_vesca FvH4_4g16760
malus_domestica MD13G1176600.v1.1 MD16G1178400.v1.1
prunus_persica Prupe.1G145800_v2.0.a1 Prupe.1G145800_v2.0.a1
pyrus_communis pycom13g15240 pycom16g14990
rosa_chinensis RchiOBHm_Chr4g0420331
rosa_laevigata RLG00000007772
rosa_roxburghii Rroxscaffold_5G00362980
rosa_samantha Rh4AG224500 Rh4BG227500 Rh4CG239000 Rh4DG223000
rosa_wichuraiana Rw0G005760 Rw4G019380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 4 cut(s) 40, 98, 198, 900
AcsI RAATTY 1 cut(s) 224
AcuI CTGAAG 3 cut(s) 347, 555, 960
AcvI CACGTG 1 cut(s) 161
AcyI GRCGYC 1 cut(s) 712
AfaI GTAC 1 cut(s) 676
AflIII ACRYGT 2 cut(s) 158, 160
AgsI TTSAA 7 cut(s) 89, 230, 419, 494, 501, 545, 774
AjnI CCWGG 2 cut(s) 643, 784
AjuI GAANNNNNNNTTGG 2 cut(s) 933, 965
AluBI AGCT 9 cut(s) 118, 128, 170, 289, 382, 530, 551, 596, 938
AluI AGCT 9 cut(s) 118, 128, 170, 289, 382, 530, 551, 596, 938
Alw26I GTCTC 7 cut(s) 169, 246, 258, 352, 379, 417, 688
AlwI GGATC 4 cut(s) 40, 98, 198, 900
AlwNI CAGNNNCTG 1 cut(s) 785
Ama87I CYCGRG 2 cut(s) 257, 807
ApeKI GCWGC 2 cut(s) 115, 551
ApoI RAATTY 1 cut(s) 224
Asp700I GAANNNNTTC 1 cut(s) 84
AsuC2I CCSGG 1 cut(s) 197
AsuHPI GGTGA 1 cut(s) 317
AvaI CYCGRG 2 cut(s) 257, 807
BbrPI CACGTG 1 cut(s) 161
BbsI GAAGAC 2 cut(s) 404, 593
BbvI GCAGC 2 cut(s) 127, 538
BccI CCATC 2 cut(s) 296, 809
BceAI ACGGC 1 cut(s) 647
BcgI CGANNNNNNTGC 2 cut(s) 554, 588
BciT130I CCWGG 2 cut(s) 645, 786
BclI TGATCA 1 cut(s) 993
BcnI CCSGG 1 cut(s) 197
BcoDI GTCTC 7 cut(s) 169, 246, 258, 352, 379, 417, 688
BfaI CTAG 4 cut(s) 119, 597, 738, 759
BglII AGATCT 2 cut(s) 761, 967
BisI GCNGC 2 cut(s) 116, 552
BlpI GCTNAGC 1 cut(s) 459
BlsI GCNGC 2 cut(s) 117, 553
Bme1390I CCNGG 3 cut(s) 197, 645, 786
BmeT110I CYCGRG 2 cut(s) 257, 807
BmiI GGNNCC 1 cut(s) 845
BmrFI CCNGG 3 cut(s) 197, 645, 786
BmsI GCATC 2 cut(s) 265, 562
BoxI GACNNNNGTC 1 cut(s) 161
BpiI GAAGAC 2 cut(s) 404, 593
BpmI CTGGAG 1 cut(s) 221
Bpu1102I GCTNAGC 1 cut(s) 459
BpuEI CTTGAG 1 cut(s) 404
BpuMI CCSGG 1 cut(s) 197
BsaAI YACGTR 1 cut(s) 161
BsaHI GRCGYC 1 cut(s) 712
BsaI GGTCTC 1 cut(s) 688
BsaJI CCNNGG 1 cut(s) 629
Bse1I ACTGG 1 cut(s) 238
Bse3DI GCAATG 1 cut(s) 144
BseBI CCWGG 2 cut(s) 645, 786
BseDI CCNNGG 1 cut(s) 629
BseGI GGATG 1 cut(s) 140
BseMI GCAATG 1 cut(s) 144
BseMII CTCAG 2 cut(s) 180, 792
BseNI ACTGG 1 cut(s) 238
BseRI GAGGAG 2 cut(s) 630, 696
BseXI GCAGC 2 cut(s) 127, 538
BsiHKCI CYCGRG 2 cut(s) 257, 807
BsiSI CCGG 1 cut(s) 196
BsmAI GTCTC 7 cut(s) 169, 246, 258, 352, 379, 417, 688
Bso31I GGTCTC 1 cut(s) 688
BsoBI CYCGRG 2 cut(s) 257, 807
Bsp143I GATC 8 cut(s) 32, 67, 103, 190, 761, 892, 967, 993
Bsp1720I GCTNAGC 1 cut(s) 459
BspCNI CTCAG 2 cut(s) 179, 791
BspLI GGNNCC 1 cut(s) 845
BspPI GGATC 4 cut(s) 40, 98, 198, 900
BspTNI GGTCTC 1 cut(s) 688
BsrDI GCAATG 1 cut(s) 144
BsrI ACTGG 1 cut(s) 238
BssECI CCNNGG 1 cut(s) 629
BssMI GATC 8 cut(s) 32, 67, 103, 190, 761, 892, 967, 993
BssNI GRCGYC 1 cut(s) 712
Bst2UI CCWGG 2 cut(s) 645, 786
Bst4CI ACNGT 2 cut(s) 99, 352
Bst6I CTCTTC 2 cut(s) 420, 936
BstACI GRCGYC 1 cut(s) 712
BstBAI YACGTR 1 cut(s) 161
BstC8I GCNNGC 1 cut(s) 130
BstDEI CTNAG 4 cut(s) 166, 459, 778, 929
BstDSI CCRYGG 1 cut(s) 629
BstF5I GGATG 1 cut(s) 140
BstKTI GATC 8 cut(s) 35, 70, 106, 193, 764, 895, 970, 996
BstMAI GTCTC 7 cut(s) 169, 246, 258, 352, 379, 417, 688
BstMBI GATC 8 cut(s) 32, 67, 103, 190, 761, 892, 967, 993
BstMWI GCNNNNNNNGC 1 cut(s) 536
BstNI CCWGG 2 cut(s) 645, 786
BstNSI RCATGY 1 cut(s) 748
BstPAI GACNNNNGTC 1 cut(s) 161
BstSCI CCNGG 3 cut(s) 195, 643, 784
BstV1I GCAGC 2 cut(s) 127, 538
BstV2I GAAGAC 2 cut(s) 404, 593
BstX2I RGATCY 4 cut(s) 190, 761, 892, 967
BstYI RGATCY 4 cut(s) 190, 761, 892, 967
BtgI CCRYGG 1 cut(s) 629
BtgZI GCGATG 1 cut(s) 439
BtsCI GGATG 1 cut(s) 140
Cac8I GCNNGC 1 cut(s) 130
CaiI CAGNNNCTG 1 cut(s) 785
CseI GACGC 2 cut(s) 409, 720
Csp6I GTAC 1 cut(s) 675
CviAII CATG 1 cut(s) 745
CviQI GTAC 1 cut(s) 675
DdeI CTNAG 4 cut(s) 166, 459, 778, 929
DpnI GATC 8 cut(s) 34, 69, 105, 192, 763, 894, 969, 995
DpnII GATC 8 cut(s) 32, 67, 103, 190, 761, 892, 967, 993
Eam1104I CTCTTC 2 cut(s) 420, 936
EarI CTCTTC 2 cut(s) 420, 936
Eco31I GGTCTC 1 cut(s) 688
Eco57I CTGAAG 3 cut(s) 347, 555, 960
Eco72I CACGTG 1 cut(s) 161
Eco88I CYCGRG 2 cut(s) 257, 807
EcoRII CCWGG 2 cut(s) 643, 784
FaeI CATG 1 cut(s) 748
FaiI YATR 4 cut(s) 285, 407, 746, 980
FalI AAGNNNNNCTT 2 cut(s) 912, 944
FatI CATG 1 cut(s) 744
FbaI TGATCA 1 cut(s) 993
Fnu4HI GCNGC 2 cut(s) 116, 552
FokI GGATG 1 cut(s) 127
Fsp4HI GCNGC 2 cut(s) 116, 552
FspBI CTAG 4 cut(s) 119, 597, 738, 759
GluI GCNGC 2 cut(s) 116, 552
GsuI CTGGAG 1 cut(s) 221
HapII CCGG 1 cut(s) 196
HgaI GACGC 2 cut(s) 409, 720
Hin1I GRCGYC 1 cut(s) 712
Hin1II CATG 1 cut(s) 748
HindIII AAGCTT 3 cut(s) 287, 380, 528
HinfI GANTC 4 cut(s) 176, 182, 251, 316
HpaII CCGG 1 cut(s) 196
HphI GGTGA 1 cut(s) 317
Hpy166II GTNNAC 2 cut(s) 677, 791
Hpy188I TCNGA 9 cut(s) 7, 103, 181, 190, 274, 321, 366, 535, 781
Hpy8I GTNNAC 2 cut(s) 677, 791
Hpy99I CGWCG 2 cut(s) 190, 714
HpyAV CCTTC 3 cut(s) 23, 507, 883
HpyCH4III ACNGT 2 cut(s) 99, 352
HpyCH4IV ACGT 3 cut(s) 160, 246, 975
HpyCH4V TGCA 4 cut(s) 44, 437, 554, 872
HpyF10VI GCNNNNNNNGC 1 cut(s) 536
HpyF3I CTNAG 4 cut(s) 166, 459, 778, 929
HpySE526I ACGT 3 cut(s) 160, 246, 975
Hsp92I GRCGYC 1 cut(s) 712
Hsp92II CATG 1 cut(s) 748
Ksp22I TGATCA 1 cut(s) 993
Kzo9I GATC 8 cut(s) 32, 67, 103, 190, 761, 892, 967, 993
LmnI GCTCC 2 cut(s) 580, 843
Lsp1109I GCAGC 2 cut(s) 127, 538
LweI GCATC 2 cut(s) 265, 562
MaeI CTAG 4 cut(s) 119, 597, 738, 759
MaeII ACGT 3 cut(s) 160, 246, 975
MalI GATC 8 cut(s) 34, 69, 105, 192, 763, 894, 969, 995
MboI GATC 8 cut(s) 32, 67, 103, 190, 761, 892, 967, 993
MflI RGATCY 4 cut(s) 190, 761, 892, 967
MluCI AATT 3 cut(s) 45, 224, 863
MlyI GAGTC 2 cut(s) 191, 260
MmeI TCCRAC 1 cut(s) 168
MnlI CCTC 7 cut(s) 253, 379, 651, 717, 734, 947, 979
MroXI GAANNNNTTC 1 cut(s) 84
MseI TTAA 1 cut(s) 897
MspA1I CMGCKG 1 cut(s) 551
MspI CCGG 1 cut(s) 196
MspR9I CCNGG 3 cut(s) 197, 645, 786
MvaI CCWGG 2 cut(s) 645, 786
MwoI GCNNNNNNNGC 1 cut(s) 536
NciI CCSGG 1 cut(s) 197
NdeII GATC 8 cut(s) 32, 67, 103, 190, 761, 892, 967, 993
NlaIII CATG 1 cut(s) 748
NlaIV GGNNCC 1 cut(s) 845
NmeAIII GCCGAG 1 cut(s) 235
NspI RCATGY 1 cut(s) 748
PaeR7I CTCGAG 1 cut(s) 257
PcsI WCGNNNNNNNCGW 2 cut(s) 72, 981
PdmI GAANNNNTTC 1 cut(s) 84
PfeI GAWTC 2 cut(s) 176, 316
PfoI TCCNGGA 1 cut(s) 195
PkrI GCNGC 2 cut(s) 117, 553
PleI GAGTC 2 cut(s) 190, 259
PmaCI CACGTG 1 cut(s) 161
PmlI CACGTG 1 cut(s) 161
PpsI GAGTC 2 cut(s) 190, 259
Ppu21I YACGTR 1 cut(s) 161
PshAI GACNNNNGTC 1 cut(s) 161
Psp6I CCWGG 2 cut(s) 643, 784
PspCI CACGTG 1 cut(s) 161
PspGI CCWGG 2 cut(s) 643, 784
PspN4I GGNNCC 1 cut(s) 845
PstNI CAGNNNCTG 1 cut(s) 785
PsuI RGATCY 4 cut(s) 190, 761, 892, 967
PvuII CAGCTG 1 cut(s) 551
RsaI GTAC 1 cut(s) 676
RsaNI GTAC 1 cut(s) 675
SaqAI TTAA 1 cut(s) 897
SatI GCNGC 2 cut(s) 116, 552
Sau3AI GATC 8 cut(s) 32, 67, 103, 190, 761, 892, 967, 993
SchI GAGTC 2 cut(s) 191, 260
ScrFI CCNGG 3 cut(s) 197, 645, 786
SfaNI GCATC 2 cut(s) 265, 562
Sfr274I CTCGAG 1 cut(s) 257
SlaI CTCGAG 1 cut(s) 257
SmlI CTYRAG 2 cut(s) 257, 383
SmoI CTYRAG 2 cut(s) 257, 383
Sse9I AATT 3 cut(s) 45, 224, 863
SspMI CTAG 4 cut(s) 119, 597, 738, 759
StyD4I CCNGG 3 cut(s) 195, 643, 784
TaaI ACNGT 2 cut(s) 99, 352
TaiI ACGT 3 cut(s) 163, 249, 978
TasI AATT 3 cut(s) 45, 224, 863
TfiI GAWTC 2 cut(s) 176, 316
Tru1I TTAA 1 cut(s) 897
Tru9I TTAA 1 cut(s) 897
TseI GCWGC 2 cut(s) 115, 551
TspDTI ATGAA 3 cut(s) 93, 272, 498
TspGWI ACGGA 1 cut(s) 594
XapI RAATTY 1 cut(s) 224
XceI RCATGY 1 cut(s) 748
XhoI CTCGAG 1 cut(s) 257
XmnI GAANNNNTTC 1 cut(s) 84
XspI CTAG 4 cut(s) 119, 597, 738, 759
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.