Prupe.1G145800_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0014233
Physical Location & Seq
Reverse (-)
11442690 .. 11445281
2592 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G145800.2

Sequence Viewer

Length: 1035 bp
ATGCTTGCGAAGGAATCGGGTGGTTCGAACTTCGATCTTCCCGAGGAAGTGTTGCAAGTACTGCCGTCGGATCCTTTCGAGCAACTCGATGTGGCCCGCAAAATCACGTCCGTTGCGCTCTCGACACGTGTCTCTGCCCTGGAATCAGAGTCGTACGCTCTGCGCGCCAAGCTCGCTGAGAAGGACCAGCTCATCGCCGAGCTCCAGGCGCAGGTTGAGTCCCTCGACGCCTCGCTCTCCGAGACCGCCGATAAACTCGCCCTCGCCGAGCGGGAGAAGGAGGGCTTGGTGAAAGAGAAGGCGTTGCTCTCCAACACTGTGAGGAAGCTGAACAGAGATGTCTCAAAGTTGGAGGTGTTCAGAAAGACGCTTATGCGATCACTTGAAGAAGAGGACGAAAATTCTACCGGAGCTTCGGAGGCTGTTGCAAAGCCTAAGACACAAACCCAAGAGAACTTATCTTCTAAACCACAAGCTCAAGTTGGAGTTTCAGAAGGTGATGCCACATTTGCCACATTGCCACCTTCGAGGGCATCTTCAATCCGTAGCCATTACTCTGAAACAGGAAGCATATTTTCGGAGGATCGTGACACAGAAGCTGAAAGACCTCGCATATCACCGGGCCTCCTGTTAGCATCCCAAACTAGCACACCTCGGTTCACTCCTCCTGGTTCTCCTCCAGTCTATTCTGCATCCACATCCCCAACAAGAACATCAAAACCTGTGTCCCCTAAGCGGCACTCCATGTCATTCGCCACCTCAAGAGGCATGTTTGATGACAGATCTTCTATGCCTTCAAGCCATCACAGCACTGAATATGGAAGAACTCGGGTGGATGGGAAAGAATTTTTCCGCCAAGTCAGGAGTCGTTTGTCTTACGAGCAGTTTGGTGCATTTCTTGCTAATGTTAAGGAGCTAAATGGCCACAAGCAAACAAAGGAGGAGACTCTGCAGAAGGCTGATGAGATTTTTGGCCCAGATAACAAGGATCTATATGCTATATTCGAAGGCTTAATCAGTCGCAATGTACACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0016020 GO:0022857 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

345

Amino Acids

37.94

Weight (kDa)

5.84

Isoelectric Point (pI)

51.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014233)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15545
fragaria_vesca FvH4_4g16760
malus_domestica MD13G1176600.v1.1 MD16G1178400.v1.1
prunus_persica Prupe.1G145800_v2.0.a1 Prupe.1G145800_v2.0.a1
pyrus_communis pycom13g15240 pycom16g14990
rosa_chinensis RchiOBHm_Chr4g0420331
rosa_laevigata RLG00000007772
rosa_roxburghii Rroxscaffold_5G00362980
rosa_samantha Rh4AG224500 Rh4BG227500 Rh4CG239000 Rh4DG223000
rosa_wichuraiana Rw0G005760 Rw4G019380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 202
AccBSI CCGCTC 1 cut(s) 271
AccII CGCG 1 cut(s) 165
AciI CCGC 5 cut(s) 97, 246, 271, 736, 853
AclWI GGATC 4 cut(s) 65, 78, 591, 996
AcoI YGGCCR 1 cut(s) 922
AcsI RAATTY 2 cut(s) 400, 845
AcvI CACGTG 1 cut(s) 128
AcyI GRCGYC 1 cut(s) 228
AfaI GTAC 3 cut(s) 60, 155, 1029
AfiI CCNNNNNNNGG 2 cut(s) 211, 735
AflIII ACRYGT 2 cut(s) 125, 127
AgsI TTSAA 3 cut(s) 386, 540, 798
AjiI CACGTC 1 cut(s) 108
AjnI CCWGG 3 cut(s) 138, 204, 667
AjuI GAANNNNNNNTTGG 2 cut(s) 269, 301
AluBI AGCT 8 cut(s) 172, 190, 202, 328, 413, 476, 599, 916
AluI AGCT 8 cut(s) 172, 190, 202, 328, 413, 476, 599, 916
Alw21I GWGCWC 1 cut(s) 204
Alw26I GTCTC 4 cut(s) 136, 236, 346, 938
AlwI GGATC 4 cut(s) 65, 78, 591, 996
AlwNI CAGNNNCTG 1 cut(s) 599
Ama87I CYCGRG 2 cut(s) 41, 828
AoxI GGCC 4 cut(s) 93, 622, 922, 973
ApoI RAATTY 2 cut(s) 400, 845
ArsI GACNNNNNNTTYG 2 cut(s) 710, 742
AspLEI GCGC 4 cut(s) 118, 165, 167, 211
AspS9I GGNCC 4 cut(s) 94, 184, 622, 974
AsuC2I CCSGG 1 cut(s) 621
AsuHPI GGTGA 3 cut(s) 301, 509, 609
AsuII TTCGAA 2 cut(s) 26, 1005
AvaI CYCGRG 2 cut(s) 41, 828
AvaII GGWCC 1 cut(s) 184
BalI TGGCCA 1 cut(s) 924
BamHI GGATCC 1 cut(s) 70
BanII GRGCYC 1 cut(s) 204
BbrPI CACGTG 1 cut(s) 128
Bbv12I GWGCWC 1 cut(s) 204
BccI CCATC 2 cut(s) 810, 830
BceAI ACGGC 1 cut(s) 49
BciT130I CCWGG 3 cut(s) 140, 206, 669
BcnI CCSGG 1 cut(s) 621
BcoDI GTCTC 4 cut(s) 136, 236, 346, 938
BfaI CTAG 1 cut(s) 645
BfmI CTRYAG 1 cut(s) 950
BfuAI ACCTGC 1 cut(s) 202
BglII AGATCT 1 cut(s) 782
BisI GCNGC 1 cut(s) 737
BlsI GCNGC 1 cut(s) 738
BmcAI AGTACT 1 cut(s) 60
Bme1390I CCNGG 4 cut(s) 140, 206, 621, 669
Bme18I GGWCC 1 cut(s) 184
BmeT110I CYCGRG 2 cut(s) 41, 828
BmgBI CACGTC 1 cut(s) 108
BmgT120I GGNCC 4 cut(s) 94, 184, 622, 974
BmiI GGNNCC 1 cut(s) 72
BmrFI CCNGG 4 cut(s) 140, 206, 621, 669
BmsI GCATC 4 cut(s) 490, 542, 644, 701
BoxI GACNNNNGTC 1 cut(s) 128
BpmI CTGGAG 2 cut(s) 188, 663
Bpu10I CCTNAGC 1 cut(s) 732
Bpu14I TTCGAA 2 cut(s) 26, 1005
BpuEI CTTGAG 2 cut(s) 462, 745
BpuMI CCSGG 1 cut(s) 621
BsaAI YACGTR 1 cut(s) 128
BsaHI GRCGYC 1 cut(s) 228
BsaI GGTCTC 1 cut(s) 236
BsaJI CCNNGG 3 cut(s) 42, 138, 653
BsaWI WCCGGW 1 cut(s) 407
BsaXI ACNNNNNCTCC 2 cut(s) 609, 639
Bsc4I CCNNNNNNNGG 2 cut(s) 211, 735
Bse1I ACTGG 1 cut(s) 680
Bse3DI GCAATG 2 cut(s) 515, 1030
BseBI CCWGG 3 cut(s) 140, 206, 669
BseDI CCNNGG 3 cut(s) 42, 138, 653
BseGI GGATG 4 cut(s) 635, 692, 698, 841
BseLI CCNNNNNNNGG 2 cut(s) 211, 735
BseMI GCAATG 2 cut(s) 515, 1030
BseMII CTCAG 1 cut(s) 168
BseNI ACTGG 1 cut(s) 680
BsePI GCGCGC 1 cut(s) 163
BseRI GAGGAG 3 cut(s) 654, 666, 956
Bsh1236I CGCG 1 cut(s) 165
BshFI GGCC 4 cut(s) 95, 624, 924, 975
BsiHKAI GWGCWC 1 cut(s) 204
BsiHKCI CYCGRG 2 cut(s) 41, 828
BsiSI CCGG 2 cut(s) 408, 620
BsiWI CGTACG 1 cut(s) 153
BslFI GGGAC 2 cut(s) 205, 712
BslI CCNNNNNNNGG 2 cut(s) 211, 735
BsmAI GTCTC 4 cut(s) 136, 236, 346, 938
BsmFI GGGAC 2 cut(s) 205, 712
BsnI GGCC 4 cut(s) 95, 624, 924, 975
Bso31I GGTCTC 1 cut(s) 236
BsoBI CYCGRG 2 cut(s) 41, 828
Bsp119I TTCGAA 2 cut(s) 26, 1005
Bsp1286I GDGCHC 1 cut(s) 204
Bsp1407I TGTACA 1 cut(s) 1027
Bsp143I GATC 6 cut(s) 34, 70, 377, 583, 782, 988
BspACI CCGC 5 cut(s) 97, 246, 271, 736, 853
BspANI GGCC 4 cut(s) 95, 624, 924, 975
BspCNI CTCAG 1 cut(s) 169
BspFNI CGCG 1 cut(s) 165
BspLI GGNNCC 1 cut(s) 72
BspMAI CTGCAG 1 cut(s) 954
BspMI ACCTGC 1 cut(s) 202
BspPI GGATC 4 cut(s) 65, 78, 591, 996
BspT104I TTCGAA 2 cut(s) 26, 1005
BspTNI GGTCTC 1 cut(s) 236
BsrBI CCGCTC 1 cut(s) 271
BsrDI GCAATG 2 cut(s) 515, 1030
BsrGI TGTACA 1 cut(s) 1027
BsrI ACTGG 1 cut(s) 680
BssECI CCNNGG 3 cut(s) 42, 138, 653
BssHII GCGCGC 1 cut(s) 163
BssMI GATC 6 cut(s) 34, 70, 377, 583, 782, 988
BssNI GRCGYC 1 cut(s) 228
Bst2UI CCWGG 3 cut(s) 140, 206, 669
Bst4CI ACNGT 1 cut(s) 319
Bst6I CTCTTC 1 cut(s) 384
BstACI GRCGYC 1 cut(s) 228
BstAPI GCANNNNNTGC 2 cut(s) 61, 899
BstAUI TGTACA 1 cut(s) 1027
BstBAI YACGTR 1 cut(s) 128
BstBI TTCGAA 2 cut(s) 26, 1005
BstC8I GCNNGC 4 cut(s) 6, 97, 165, 174
BstDEI CTNAG 3 cut(s) 177, 435, 732
BstF5I GGATG 4 cut(s) 635, 692, 698, 841
BstFNI CGCG 1 cut(s) 165
BstHHI GCGC 4 cut(s) 118, 165, 167, 211
BstKTI GATC 6 cut(s) 37, 73, 380, 586, 785, 991
BstMAI GTCTC 4 cut(s) 136, 236, 346, 938
BstMBI GATC 6 cut(s) 34, 70, 377, 583, 782, 988
BstMWI GCNNNNNNNGC 9 cut(s) 61, 164, 169, 173, 208, 419, 509, 807, 899
BstNI CCWGG 3 cut(s) 140, 206, 669
BstNSI RCATGY 1 cut(s) 772
BstPAI GACNNNNGTC 1 cut(s) 128
BstSCI CCNGG 4 cut(s) 138, 204, 619, 667
BstSFI CTRYAG 1 cut(s) 950
BstUI CGCG 1 cut(s) 165
BstX2I RGATCY 3 cut(s) 70, 782, 988
BstYI RGATCY 3 cut(s) 70, 782, 988
BsuRI GGCC 4 cut(s) 95, 624, 924, 975
BtgZI GCGATG 1 cut(s) 178
BtrI CACGTC 1 cut(s) 108
BtsCI GGATG 4 cut(s) 635, 692, 698, 841
BtsIMutI CAGTG 2 cut(s) 315, 810
BveI ACCTGC 1 cut(s) 202
Cac8I GCNNGC 4 cut(s) 6, 97, 165, 174
CaiI CAGNNNCTG 1 cut(s) 599
CfoI GCGC 4 cut(s) 118, 165, 167, 211
Cfr13I GGNCC 4 cut(s) 94, 184, 622, 974
CseI GACGC 2 cut(s) 236, 376
Csp6I GTAC 3 cut(s) 59, 154, 1028
CviAII CATG 2 cut(s) 745, 769
CviQI GTAC 3 cut(s) 59, 154, 1028
DdeI CTNAG 3 cut(s) 177, 435, 732
DpnI GATC 6 cut(s) 36, 72, 379, 585, 784, 990
DpnII GATC 6 cut(s) 34, 70, 377, 583, 782, 988
EaeI YGGCCR 1 cut(s) 922
Eam1104I CTCTTC 1 cut(s) 384
EarI CTCTTC 1 cut(s) 384
EciI GGCGGA 1 cut(s) 842
Ecl136II GAGCTC 1 cut(s) 202
Eco24I GRGCYC 1 cut(s) 204
Eco31I GGTCTC 1 cut(s) 236
Eco47I GGWCC 1 cut(s) 184
Eco53kI GAGCTC 1 cut(s) 202
Eco72I CACGTG 1 cut(s) 128
Eco88I CYCGRG 2 cut(s) 41, 828
EcoICRI GAGCTC 1 cut(s) 202
EcoRII CCWGG 3 cut(s) 138, 204, 667
EcoT38I GRGCYC 1 cut(s) 204
FaeI CATG 2 cut(s) 748, 772
FalI AAGNNNNNCTT 2 cut(s) 269, 301
FaqI GGGAC 2 cut(s) 205, 712
FatI CATG 2 cut(s) 744, 768
FauI CCCGC 2 cut(s) 104, 264
Fnu4HI GCNGC 1 cut(s) 737
FokI GGATG 4 cut(s) 622, 679, 685, 848
FriOI GRGCYC 1 cut(s) 204
Fsp4HI GCNGC 1 cut(s) 737
FspBI CTAG 1 cut(s) 645
GlaI GCGC 4 cut(s) 117, 164, 166, 210
GluI GCNGC 1 cut(s) 737
GsuI CTGGAG 2 cut(s) 188, 663
HaeIII GGCC 4 cut(s) 95, 624, 924, 975
HapII CCGG 2 cut(s) 408, 620
HgaI GACGC 2 cut(s) 236, 376
HhaI GCGC 4 cut(s) 118, 165, 167, 211
Hin1I GRCGYC 1 cut(s) 228
Hin1II CATG 2 cut(s) 748, 772
Hin6I GCGC 4 cut(s) 116, 163, 165, 209
HinP1I GCGC 4 cut(s) 116, 163, 165, 209
HinfI GANTC 6 cut(s) 14, 143, 149, 218, 865, 946
HpaII CCGG 2 cut(s) 408, 620
HphI GGTGA 3 cut(s) 301, 509, 609
Hpy166II GTNNAC 2 cut(s) 660, 1030
Hpy188I TCNGA 8 cut(s) 70, 148, 241, 362, 418, 493, 559, 580
Hpy188III TCNNGA 5 cut(s) 41, 121, 587, 762, 862
Hpy8I GTNNAC 2 cut(s) 660, 1030
Hpy99I CGWCG 2 cut(s) 70, 230
HpyAV CCTTC 9 cut(s) 4, 175, 271, 292, 488, 534, 804, 949, 1001
HpyCH4III ACNGT 1 cut(s) 319
HpyCH4IV ACGT 2 cut(s) 107, 127
HpyCH4V TGCA 5 cut(s) 55, 428, 692, 893, 952
HpyF10VI GCNNNNNNNGC 9 cut(s) 61, 164, 169, 173, 208, 419, 509, 807, 899
HpyF3I CTNAG 3 cut(s) 177, 435, 732
HpySE526I ACGT 2 cut(s) 107, 127
Hsp92I GRCGYC 1 cut(s) 228
Hsp92II CATG 2 cut(s) 748, 772
HspAI GCGC 4 cut(s) 116, 163, 165, 209
Kzo9I GATC 6 cut(s) 34, 70, 377, 583, 782, 988
LmnI GCTCC 3 cut(s) 207, 410, 913
LweI GCATC 4 cut(s) 490, 542, 644, 701
MaeI CTAG 1 cut(s) 645
MaeII ACGT 2 cut(s) 107, 127
MaeIII GTNAC 1 cut(s) 587
MalI GATC 6 cut(s) 36, 72, 379, 585, 784, 990
MbiI CCGCTC 1 cut(s) 271
MboI GATC 6 cut(s) 34, 70, 377, 583, 782, 988
MboII GAAGA 7 cut(s) 29, 398, 401, 453, 528, 777, 834
MflI RGATCY 3 cut(s) 70, 782, 988
MhlI GDGCHC 1 cut(s) 204
MlsI TGGCCA 1 cut(s) 924
MluCI AATT 2 cut(s) 400, 845
MluNI TGGCCA 1 cut(s) 924
MlyI GAGTC 4 cut(s) 158, 227, 874, 940
MmeI TCCRAC 4 cut(s) 48, 330, 336, 463
Mox20I TGGCCA 1 cut(s) 924
MscI TGGCCA 1 cut(s) 924
MseI TTAA 2 cut(s) 909, 1013
Msp20I TGGCCA 1 cut(s) 924
MspI CCGG 2 cut(s) 408, 620
MspR9I CCNGG 4 cut(s) 140, 206, 621, 669
MvaI CCWGG 3 cut(s) 140, 206, 669
MvnI CGCG 1 cut(s) 165
MwoI GCNNNNNNNGC 9 cut(s) 61, 164, 169, 173, 208, 419, 509, 807, 899
NciI CCSGG 1 cut(s) 621
NdeII GATC 6 cut(s) 34, 70, 377, 583, 782, 988
NlaIII CATG 2 cut(s) 748, 772
NlaIV GGNNCC 1 cut(s) 72
NmeAIII GCCGAG 2 cut(s) 223, 292
NmuCI GTSAC 1 cut(s) 587
NspI RCATGY 1 cut(s) 772
NspV TTCGAA 2 cut(s) 26, 1005
PauI GCGCGC 1 cut(s) 163
PcsI WCGNNNNNNNCGW 4 cut(s) 23, 39, 84, 264
PfeI GAWTC 2 cut(s) 14, 143
Pfl23II CGTACG 1 cut(s) 153
PkrI GCNGC 1 cut(s) 738
PleI GAGTC 4 cut(s) 157, 226, 873, 940
PmaCI CACGTG 1 cut(s) 128
PmlI CACGTG 1 cut(s) 128
PpsI GAGTC 4 cut(s) 157, 226, 873, 940
Ppu21I YACGTR 1 cut(s) 128
PshAI GACNNNNGTC 1 cut(s) 128
Psp124BI GAGCTC 1 cut(s) 204
Psp6I CCWGG 3 cut(s) 138, 204, 667
PspCI CACGTG 1 cut(s) 128
PspGI CCWGG 3 cut(s) 138, 204, 667
PspLI CGTACG 1 cut(s) 153
PspN4I GGNNCC 1 cut(s) 72
PspPI GGNCC 4 cut(s) 94, 184, 622, 974
PstI CTGCAG 1 cut(s) 954
PstNI CAGNNNCTG 1 cut(s) 599
PsuI RGATCY 3 cut(s) 70, 782, 988
PteI GCGCGC 1 cut(s) 163
RsaI GTAC 3 cut(s) 60, 155, 1029
RsaNI GTAC 3 cut(s) 59, 154, 1028
SacI GAGCTC 1 cut(s) 204
SaqAI TTAA 2 cut(s) 909, 1013
SatI GCNGC 1 cut(s) 737
Sau3AI GATC 6 cut(s) 34, 70, 377, 583, 782, 988
Sau96I GGNCC 4 cut(s) 94, 184, 622, 974
ScaI AGTACT 1 cut(s) 60
SchI GAGTC 4 cut(s) 158, 227, 874, 940
ScrFI CCNGG 4 cut(s) 140, 206, 621, 669
SduI GDGCHC 1 cut(s) 204
SfaNI GCATC 4 cut(s) 490, 542, 644, 701
SfcI CTRYAG 1 cut(s) 950
SfuI TTCGAA 2 cut(s) 26, 1005
SinI GGWCC 1 cut(s) 184
SmlI CTYRAG 2 cut(s) 477, 760
SmoI CTYRAG 2 cut(s) 477, 760
Sse9I AATT 2 cut(s) 400, 845
SsiI CCGC 5 cut(s) 97, 246, 271, 736, 853
SspMI CTAG 1 cut(s) 645
SstI GAGCTC 1 cut(s) 204
StyD4I CCNGG 4 cut(s) 138, 204, 619, 667
TaaI ACNGT 1 cut(s) 319
TaiI ACGT 2 cut(s) 110, 130
TaqI TCGA 8 cut(s) 26, 33, 78, 87, 122, 225, 527, 1005
TasI AATT 2 cut(s) 400, 845
TatI WGTACW 2 cut(s) 58, 1027
TauI GCSGC 1 cut(s) 739
TfiI GAWTC 2 cut(s) 14, 143
Tru1I TTAA 2 cut(s) 909, 1013
Tru9I TTAA 2 cut(s) 909, 1013
TscAI CASTG 2 cut(s) 322, 817
TseFI GTSAC 1 cut(s) 587
Tsp45I GTSAC 1 cut(s) 587
TspGWI ACGGA 2 cut(s) 100, 533
TspRI CASTG 2 cut(s) 322, 817
VpaK11BI GGWCC 1 cut(s) 184
XapI RAATTY 2 cut(s) 400, 845
XceI RCATGY 1 cut(s) 772
XspI CTAG 1 cut(s) 645
ZrmI AGTACT 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.