MD16G1178400.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0014233
Physical Location & Seq
Reverse (-)
15234416 .. 15236329
1914 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1178400.v1.1.491

Sequence Viewer

Length: 414 bp
ATGTCAAATTTAATTTTCTTGTATATCTTGCGTTTTCTTGTTGCAATGGCAGCCTCAATACCTCACATAGCACACAGTGTACTGTTAGCATCCCAAACTAGCACACCTCGGCTCACTCCCCCTGGTTCTCCTCCTATCTTTTCTGCATCCACATCACCAACAAGATCATCGAAACCTGTGTCTCCAAAGCGACACTCCATAACTAGGGTGGATGGGAAAGAGTTTTTCCGTCAAGTCAGGAGTCGTCTATCTTACGAGCAGTTTAGTGCATTTCTGGAAAATGTTAAGGAACTAAACAGGAACAAGCAAACAAAAGAGGAGACACTACAGAAGGCAGATGAGATATTTGGGCCGGATAACAAGGACCTATATGCTATTTTGATTAATTGTTCTCGGCCTGGAAGCCTTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0016020 GO:0022857 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

15.32

Weight (kDa)

9.92

Isoelectric Point (pI)

62.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
At4g15545_C PF25972 69 - 126 1.4e-30 At4g15545-like, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014233)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15545
fragaria_vesca FvH4_4g16760
malus_domestica MD13G1176600.v1.1 MD16G1178400.v1.1
prunus_persica Prupe.1G145800_v2.0.a1 Prupe.1G145800_v2.0.a1
pyrus_communis pycom13g15240 pycom16g14990
rosa_chinensis RchiOBHm_Chr4g0420331
rosa_laevigata RLG00000007772
rosa_roxburghii Rroxscaffold_5G00362980
rosa_samantha Rh4AG224500 Rh4BG227500 Rh4CG239000 Rh4DG223000
rosa_wichuraiana Rw0G005760 Rw4G019380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 7
AdeI CACNNNGTG 1 cut(s) 77
AfaI GTAC 1 cut(s) 81
AfiI CCNNNNNNNGG 1 cut(s) 204
AjnI CCWGG 2 cut(s) 121, 397
Alw26I GTCTC 2 cut(s) 186, 314
AoxI GGCC 2 cut(s) 350, 395
ApeKI GCWGC 1 cut(s) 50
ApoI RAATTY 1 cut(s) 7
ArsI GACNNNNNNTTYG 2 cut(s) 164, 196
AseI ATTAAT 1 cut(s) 384
AspS9I GGNCC 2 cut(s) 350, 364
AsuHPI GGTGA 1 cut(s) 147
AvaII GGWCC 1 cut(s) 364
BbvI GCAGC 1 cut(s) 62
BccI CCATC 1 cut(s) 206
BciT130I CCWGG 2 cut(s) 123, 399
BcoDI GTCTC 2 cut(s) 186, 314
BfaI CTAG 2 cut(s) 99, 204
BfmI CTRYAG 1 cut(s) 326
BisI GCNGC 1 cut(s) 51
BlsI GCNGC 1 cut(s) 52
Bme1390I CCNGG 2 cut(s) 123, 399
Bme18I GGWCC 1 cut(s) 364
BmgT120I GGNCC 2 cut(s) 350, 364
BmrFI CCNGG 2 cut(s) 123, 399
BmsI GCATC 2 cut(s) 98, 155
BsaJI CCNNGG 2 cut(s) 107, 121
Bsc4I CCNNNNNNNGG 1 cut(s) 204
Bse3DI GCAATG 1 cut(s) 51
BseBI CCWGG 2 cut(s) 123, 399
BseDI CCNNGG 2 cut(s) 107, 121
BseGI GGATG 3 cut(s) 89, 146, 217
BseLI CCNNNNNNNGG 1 cut(s) 204
BseMI GCAATG 1 cut(s) 51
BseRI GAGGAG 2 cut(s) 120, 332
BseXI GCAGC 1 cut(s) 62
BshFI GGCC 2 cut(s) 352, 397
BsiSI CCGG 1 cut(s) 353
BslI CCNNNNNNNGG 1 cut(s) 204
BsmAI GTCTC 2 cut(s) 186, 314
BsnI GGCC 2 cut(s) 352, 397
Bsp143I GATC 1 cut(s) 164
BspANI GGCC 2 cut(s) 352, 397
BsrDI GCAATG 1 cut(s) 51
BssECI CCNNGG 2 cut(s) 107, 121
BssMI GATC 1 cut(s) 164
Bst2UI CCWGG 2 cut(s) 123, 399
Bst4CI ACNGT 2 cut(s) 77, 84
BstF5I GGATG 3 cut(s) 89, 146, 217
BstKTI GATC 1 cut(s) 167
BstMAI GTCTC 2 cut(s) 186, 314
BstMBI GATC 1 cut(s) 164
BstMWI GCNNNNNNNGC 1 cut(s) 50
BstNI CCWGG 2 cut(s) 123, 399
BstSCI CCNGG 2 cut(s) 121, 397
BstSFI CTRYAG 1 cut(s) 326
BstV1I GCAGC 1 cut(s) 62
BsuRI GGCC 2 cut(s) 352, 397
BtsCI GGATG 3 cut(s) 89, 146, 217
BtsIMutI CAGTG 1 cut(s) 82
Cfr13I GGNCC 2 cut(s) 350, 364
Csp6I GTAC 1 cut(s) 80
CviJI RGCY 5 cut(s) 53, 112, 352, 397, 405
CviKI_1 RGCY 5 cut(s) 53, 112, 352, 397, 405
CviQI GTAC 1 cut(s) 80
DpnI GATC 1 cut(s) 166
DpnII GATC 1 cut(s) 164
DraIII CACNNNGTG 1 cut(s) 77
Eco47I GGWCC 1 cut(s) 364
EcoO109I RGGNCCY 1 cut(s) 364
EcoRII CCWGG 2 cut(s) 121, 397
FaiI YATR 5 cut(s) 24, 68, 200, 370, 372
FalI AAGNNNNNCTT 1 cut(s) 394
Fnu4HI GCNGC 1 cut(s) 51
FokI GGATG 3 cut(s) 76, 133, 224
Fsp4HI GCNGC 1 cut(s) 51
FspBI CTAG 2 cut(s) 99, 204
GluI GCNGC 1 cut(s) 51
HaeIII GGCC 2 cut(s) 352, 397
HapII CCGG 1 cut(s) 353
HinfI GANTC 1 cut(s) 241
HpaII CCGG 1 cut(s) 353
HphI GGTGA 1 cut(s) 147
Hpy166II GTNNAC 1 cut(s) 80
Hpy188III TCNNGA 2 cut(s) 238, 275
Hpy8I GTNNAC 1 cut(s) 80
HpyAV CCTTC 1 cut(s) 325
HpyCH4III ACNGT 2 cut(s) 77, 84
HpyCH4V TGCA 3 cut(s) 44, 146, 269
HpyF10VI GCNNNNNNNGC 1 cut(s) 50
Kzo9I GATC 1 cut(s) 164
LpnPI CCDG 8 cut(s) 108, 135, 189, 223, 260, 283, 366, 384
Lsp1109I GCAGC 1 cut(s) 62
LweI GCATC 2 cut(s) 98, 155
MaeI CTAG 2 cut(s) 99, 204
MalI GATC 1 cut(s) 166
MboI GATC 1 cut(s) 164
MluCI AATT 3 cut(s) 7, 12, 385
MlyI GAGTC 1 cut(s) 250
MnlI CCTC 5 cut(s) 64, 72, 117, 141, 310
MseI TTAA 4 cut(s) 11, 285, 384, 412
MspI CCGG 1 cut(s) 353
MspR9I CCNGG 2 cut(s) 123, 399
MvaI CCWGG 2 cut(s) 123, 399
MwoI GCNNNNNNNGC 1 cut(s) 50
NdeII GATC 1 cut(s) 164
NmeAIII GCCGAG 2 cut(s) 88, 373
PkrI GCNGC 1 cut(s) 52
PleI GAGTC 1 cut(s) 249
PpsI GAGTC 1 cut(s) 249
PpuMI RGGWCCY 1 cut(s) 364
PshBI ATTAAT 1 cut(s) 384
Psp5II RGGWCCY 1 cut(s) 364
Psp6I CCWGG 2 cut(s) 121, 397
PspGI CCWGG 2 cut(s) 121, 397
PspPI GGNCC 2 cut(s) 350, 364
PspPPI RGGWCCY 1 cut(s) 364
RsaI GTAC 1 cut(s) 81
RsaNI GTAC 1 cut(s) 80
SaqAI TTAA 4 cut(s) 11, 285, 384, 412
SatI GCNGC 1 cut(s) 51
Sau3AI GATC 1 cut(s) 164
Sau96I GGNCC 2 cut(s) 350, 364
SchI GAGTC 1 cut(s) 250
ScrFI CCNGG 2 cut(s) 123, 399
SetI ASST 4 cut(s) 64, 109, 178, 369
SfaNI GCATC 2 cut(s) 98, 155
SfcI CTRYAG 1 cut(s) 326
SinI GGWCC 1 cut(s) 364
Sse9I AATT 3 cut(s) 7, 12, 385
SspMI CTAG 2 cut(s) 99, 204
StyD4I CCNGG 2 cut(s) 121, 397
TaaI ACNGT 2 cut(s) 77, 84
TaqI TCGA 1 cut(s) 170
TasI AATT 3 cut(s) 7, 12, 385
TatI WGTACW 1 cut(s) 79
Tru1I TTAA 4 cut(s) 11, 285, 384, 412
Tru9I TTAA 4 cut(s) 11, 285, 384, 412
TscAI CASTG 1 cut(s) 82
TseI GCWGC 1 cut(s) 50
TspGWI ACGGA 1 cut(s) 218
TspRI CASTG 1 cut(s) 82
VpaK11BI GGWCC 1 cut(s) 364
VspI ATTAAT 1 cut(s) 384
XapI RAATTY 1 cut(s) 7
XcmI CCANNNNNNNNNTGG 1 cut(s) 205
XspI CTAG 2 cut(s) 99, 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.