AT4G16060

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0014199
Physical Location & Seq
Forward (+)
9094402 .. 9096353
1952 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G16060.1

Sequence Viewer

Length: 870 bp
ATGATTGCTCTCTCACTCTCAGTCTCACTCACATCATTACCATTCTCCTTCGCGTTTTCATCGACTCCGTGCAAATCACGCGCCTCTCCTCCACGTAGCACCGTCTCGTTGAGTTCTTCCAGGAGACGACAAGATCGCCGGCGATCAATTGAGGCTATGTCTCAGGTGATGGAATTGGAAGATGAATCCGATTTCGAGAAGCTTCTCTCATCGGATAATCGGATCTCGATCACTGGATTCGGTTCTCTTCTCTCCGAGAGAAGCGCGAGGAGTACATTCCCAGATTTGGAGAATTTCAGAATCGCGAAATTGCAAGGATTCAGAAGAGTTTTCGCTCATTCTGCTCCGATCTTCTTCGAGCGTGGCATCGCGAATCCTGAAACTAAGGAGATCTCAAGCTTGAGTGTTGAGCCATGTGAAGGAGAGAGCCTTGTGGTTACTGTCTTCGAGATCAAAAGCTCAGAGATTCCGGCTTTTATTGGAAGGGAGCTTGAGTTCCGGTTTCTCGCTGTTGTTCCTGAAACATTGGAAGGCAAACCTTACACCAATTCTGCGGTACTTTGTGGTCGATACAGTGATGAGGAGTTTTTCCAGATTAGATGCAAAGGAAACAAAGGGATTTACTTTCAACATTATGGAAGATTCAAGATCGATAAGATATGGCGGGACGACATCTTACCTTGTCGTCTCTATCTAAGACACTGTGTGTTGGCTGCTAAGAATCTGGGAGATGAAGCTTACAATAACTTTCTGGATCATACATTCTTGGGAGATCGAAAAACAACCATCAGAGAGTATTTAAGCAGCACAGGGTCTGGTATCATGGAAGAAGAACCACCGGAGGCTCTAAAGTCTAGATATGGAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

289

Amino Acids

32.72

Weight (kDa)

6.92

Isoelectric Point (pI)

51.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16060
fragaria_vesca FvH4_4g18820 FvH4_4g18820
malus_domestica MD16G1162300.v1.1
prunus_persica Prupe.1G129900_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0423631
rosa_laevigata RLG00000007540
rosa_multiflora Rmu_sc0000464.1_g000016 Rmu_sc0038723.1_g000001
rosa_roxburghii Rroxscaffold_5G00365840
rosa_rugosa Rorug04G0189200 Rorug04G0189200
rosa_samantha Rh4AG248800 Rh4BG254100 Rh4CG262100 Rh4DG249100
rosa_wichuraiana Rw4G021310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 5 cut(s) 53, 81, 266, 305, 371
AciI CCGC 2 cut(s) 554, 664
AclWI GGATC 2 cut(s) 230, 762
AcsI RAATTY 1 cut(s) 292
AdeI CACNNNGTG 1 cut(s) 706
AfaI GTAC 2 cut(s) 274, 558
AfiI CCNNNNNNNGG 2 cut(s) 286, 419
AgsI TTSAA 2 cut(s) 629, 646
AjnI CCWGG 1 cut(s) 119
AloI GAACNNNNNNTCC 2 cut(s) 479, 511
AluBI AGCT 5 cut(s) 202, 399, 459, 490, 737
AluI AGCT 5 cut(s) 202, 399, 459, 490, 737
Alw26I GTCTC 5 cut(s) 28, 109, 118, 165, 692
AlwI GGATC 2 cut(s) 230, 762
AlwNI CAGNNNCTG 1 cut(s) 815
ApeKI GCWGC 2 cut(s) 713, 804
ApoI RAATTY 1 cut(s) 292
AspLEI GCGC 2 cut(s) 83, 266
AsuHPI GGTGA 1 cut(s) 178
BbsI GAAGAC 1 cut(s) 436
BbvI GCAGC 2 cut(s) 700, 816
BccI CCATC 2 cut(s) 163, 794
BciT130I CCWGG 1 cut(s) 121
BcoDI GTCTC 5 cut(s) 28, 109, 118, 165, 692
BfaI CTAG 1 cut(s) 855
BglII AGATCT 1 cut(s) 390
BisI GCNGC 2 cut(s) 714, 805
BlsI GCNGC 2 cut(s) 715, 806
Bme1390I CCNGG 1 cut(s) 121
BmrFI CCNGG 1 cut(s) 121
BmsI GCATC 2 cut(s) 375, 590
BpiI GAAGAC 1 cut(s) 436
BpuEI CTTGAG 3 cut(s) 379, 421, 512
Bsa29I ATCGAT 1 cut(s) 651
BsaAI YACGTR 1 cut(s) 95
BsaBI GATNNNNATC 1 cut(s) 227
BsaWI WCCGGW 2 cut(s) 498, 838
BsaXI ACNNNNNCTCC 2 cut(s) 479, 509
Bsc4I CCNNNNNNNGG 2 cut(s) 286, 419
Bse118I RCCGGY 1 cut(s) 138
Bse1I ACTGG 1 cut(s) 238
Bse8I GATNNNNATC 1 cut(s) 227
BseBI CCWGG 1 cut(s) 121
BseCI ATCGAT 1 cut(s) 651
BseJI GATNNNNATC 1 cut(s) 227
BseLI CCNNNNNNNGG 2 cut(s) 286, 419
BseMII CTCAG 3 cut(s) 33, 176, 474
BseNI ACTGG 1 cut(s) 238
BseRI GAGGAG 3 cut(s) 78, 283, 596
BseXI GCAGC 2 cut(s) 700, 816
Bsh1236I CGCG 5 cut(s) 53, 81, 266, 305, 371
BshVI ATCGAT 1 cut(s) 651
BsiSI CCGG 4 cut(s) 139, 470, 499, 839
BslFI GGGAC 1 cut(s) 680
BslI CCNNNNNNNGG 2 cut(s) 286, 419
BsmAI GTCTC 5 cut(s) 28, 109, 118, 165, 692
BsmBI CGTCTC 3 cut(s) 109, 118, 692
BsmFI GGGAC 1 cut(s) 680
Bsp68I TCGCGA 2 cut(s) 305, 371
BspACI CCGC 2 cut(s) 554, 664
BspCNI CTCAG 3 cut(s) 32, 175, 473
BspDI ATCGAT 1 cut(s) 651
BspFNI CGCG 5 cut(s) 53, 81, 266, 305, 371
BspPI GGATC 2 cut(s) 230, 762
BsrFI RCCGGY 1 cut(s) 138
BsrI ACTGG 1 cut(s) 238
BssAI RCCGGY 1 cut(s) 138
Bst2UI CCWGG 1 cut(s) 121
Bst4CI ACNGT 4 cut(s) 103, 442, 575, 704
Bst6I CTCTTC 2 cut(s) 252, 319
BstBAI YACGTR 1 cut(s) 95
BstC8I GCNNGC 1 cut(s) 140
BstDEI CTNAG 6 cut(s) 19, 162, 384, 460, 695, 717
BstFNI CGCG 5 cut(s) 53, 81, 266, 305, 371
BstHHI GCGC 2 cut(s) 83, 266
BstMAI GTCTC 5 cut(s) 28, 109, 118, 165, 692
BstMWI GCNNNNNNNGC 2 cut(s) 78, 341
BstNI CCWGG 1 cut(s) 121
BstSCI CCNGG 1 cut(s) 119
BstUI CGCG 5 cut(s) 53, 81, 266, 305, 371
BstV1I GCAGC 2 cut(s) 700, 816
BstV2I GAAGAC 1 cut(s) 436
BstX2I RGATCY 2 cut(s) 222, 390
BstYI RGATCY 2 cut(s) 222, 390
Bsu15I ATCGAT 1 cut(s) 651
BsuTUI ATCGAT 1 cut(s) 651
BtgZI GCGATG 1 cut(s) 352
BtsIMutI CAGTG 3 cut(s) 231, 580, 700
BtuMI TCGCGA 2 cut(s) 305, 371
Cac8I GCNNGC 1 cut(s) 140
CaiI CAGNNNCTG 1 cut(s) 815
CfoI GCGC 2 cut(s) 83, 266
Cfr10I RCCGGY 1 cut(s) 138
ClaI ATCGAT 1 cut(s) 651
Csp6I GTAC 2 cut(s) 273, 557
CviAII CATG 2 cut(s) 414, 823
CviQI GTAC 2 cut(s) 273, 557
DdeI CTNAG 6 cut(s) 19, 162, 384, 460, 695, 717
DraIII CACNNNGTG 1 cut(s) 706
Eam1104I CTCTTC 2 cut(s) 252, 319
EarI CTCTTC 2 cut(s) 252, 319
EcoRII CCWGG 1 cut(s) 119
Esp3I CGTCTC 3 cut(s) 109, 118, 692
FaeI CATG 2 cut(s) 417, 826
FaiI YATR 7 cut(s) 158, 415, 636, 661, 759, 824, 861
FaqI GGGAC 1 cut(s) 680
FatI CATG 2 cut(s) 413, 822
FauI CCCGC 1 cut(s) 657
Fnu4HI GCNGC 2 cut(s) 714, 805
Fsp4HI GCNGC 2 cut(s) 714, 805
FspBI CTAG 1 cut(s) 855
GlaI GCGC 2 cut(s) 82, 265
GluI GCNGC 2 cut(s) 714, 805
HapII CCGG 4 cut(s) 139, 470, 499, 839
HhaI GCGC 2 cut(s) 83, 266
Hin1II CATG 2 cut(s) 417, 826
Hin6I GCGC 2 cut(s) 81, 264
HinP1I GCGC 2 cut(s) 81, 264
HindIII AAGCTT 3 cut(s) 200, 397, 735
HinfI GANTC 9 cut(s) 64, 185, 237, 300, 318, 373, 466, 642, 721
HpaII CCGG 4 cut(s) 139, 470, 499, 839
HphI GGTGA 1 cut(s) 178
Hpy188I TCNGA 9 cut(s) 190, 214, 222, 256, 299, 323, 348, 463, 791
HpyAV CCTTC 4 cut(s) 58, 413, 477, 524
HpyCH4III ACNGT 4 cut(s) 103, 442, 575, 704
HpyCH4IV ACGT 1 cut(s) 94
HpyCH4V TGCA 3 cut(s) 72, 313, 603
HpyF10VI GCNNNNNNNGC 2 cut(s) 78, 341
HpyF3I CTNAG 6 cut(s) 19, 162, 384, 460, 695, 717
HpySE526I ACGT 1 cut(s) 94
Hsp92II CATG 2 cut(s) 417, 826
HspAI GCGC 2 cut(s) 81, 264
KroI GCCGGC 1 cut(s) 138
KroNI GCCGGC 1 cut(s) 140
LmnI GCTCC 2 cut(s) 349, 487
Lsp1109I GCAGC 2 cut(s) 700, 816
LweI GCATC 2 cut(s) 375, 590
MaeI CTAG 1 cut(s) 855
MaeII ACGT 1 cut(s) 94
MaeIII GTNAC 1 cut(s) 436
MfeI CAATTG 1 cut(s) 147
MflI RGATCY 2 cut(s) 222, 390
MluCI AATT 5 cut(s) 147, 173, 292, 308, 547
MlyI GAGTC 1 cut(s) 58
MnlI CCTC 7 cut(s) 94, 99, 145, 261, 574, 835, 857
MreI CGCCGGCG 1 cut(s) 138
MroNI GCCGGC 1 cut(s) 138
MseI TTAA 1 cut(s) 800
MspI CCGG 4 cut(s) 139, 470, 499, 839
MspR9I CCNGG 1 cut(s) 121
MunI CAATTG 1 cut(s) 147
MvaI CCWGG 1 cut(s) 121
MvnI CGCG 5 cut(s) 53, 81, 266, 305, 371
MwoI GCNNNNNNNGC 2 cut(s) 78, 341
NaeI GCCGGC 1 cut(s) 140
NgoMIV GCCGGC 1 cut(s) 138
NlaIII CATG 2 cut(s) 417, 826
NruI TCGCGA 2 cut(s) 305, 371
PdiI GCCGGC 1 cut(s) 140
PfeI GAWTC 8 cut(s) 185, 237, 300, 318, 373, 466, 642, 721
PfoI TCCNGGA 1 cut(s) 119
PkrI GCNGC 2 cut(s) 715, 806
PleI GAGTC 1 cut(s) 58
PpsI GAGTC 1 cut(s) 58
Ppu21I YACGTR 1 cut(s) 95
Psp6I CCWGG 1 cut(s) 119
PspGI CCWGG 1 cut(s) 119
PstNI CAGNNNCTG 1 cut(s) 815
PsuI RGATCY 2 cut(s) 222, 390
RruI TCGCGA 2 cut(s) 305, 371
RsaI GTAC 2 cut(s) 274, 558
RsaNI GTAC 2 cut(s) 273, 557
SaqAI TTAA 1 cut(s) 800
SatI GCNGC 2 cut(s) 714, 805
SchI GAGTC 1 cut(s) 58
ScrFI CCNGG 1 cut(s) 121
SfaNI GCATC 2 cut(s) 375, 590
SgrAI CRCCGGYG 1 cut(s) 138
SmlI CTYRAG 3 cut(s) 394, 400, 491
SmoI CTYRAG 3 cut(s) 394, 400, 491
Sse9I AATT 5 cut(s) 147, 173, 292, 308, 547
SsiI CCGC 2 cut(s) 554, 664
SspMI CTAG 1 cut(s) 855
StyD4I CCNGG 1 cut(s) 119
TaaI ACNGT 4 cut(s) 103, 442, 575, 704
TaiI ACGT 1 cut(s) 97
TaqI TCGA 8 cut(s) 62, 195, 227, 357, 447, 568, 651, 775
TasI AATT 5 cut(s) 147, 173, 292, 308, 547
TatI WGTACW 1 cut(s) 272
TfiI GAWTC 8 cut(s) 185, 237, 300, 318, 373, 466, 642, 721
Tru1I TTAA 1 cut(s) 800
Tru9I TTAA 1 cut(s) 800
TscAI CASTG 3 cut(s) 238, 580, 707
TseI GCWGC 2 cut(s) 713, 804
TspDTI ATGAA 3 cut(s) 48, 198, 747
TspGWI ACGGA 1 cut(s) 57
TspRI CASTG 3 cut(s) 238, 580, 707
XapI RAATTY 1 cut(s) 292
XbaI TCTAGA 1 cut(s) 854
XspI CTAG 1 cut(s) 855
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.