Rmu_sc0038723.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0038723.1
OG0014199
Physical Location & Seq
Reverse (-)
364 .. 2460
2097 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0038723.1_g000001.1.cds

Sequence Viewer

Length: 692 bp
tgagtgtggagccttatgaaggcgaaagccttatagtgacggtgtttgagattgaaaaatcggagattccggcttttatcaagagggagcctgaatttcgattcctagcggttctgcctgaaagccttgatgggaagccatttgctaatcgagcggtgctttgtgctcgttatagtgatgaagaatttttcagagtcagatgcaaaggaagtaaggaaatgtattttgagctatttgggcgatatgacatagataagatttggagggatgatatcttaccttgccgaacttaccttcgtcactgtgtgctagcagcaaagaatctcaacgatatagcatgcaacaacttcttggatcacactttccttggagaccgtaaaacaaccatccgcaagtacttggctacaacaggttcgggaatcatggaagaagagcctccggaatccctcaagatccgttacggggtggatcgacctgttaatgaccctaaagtgatggcgggtcgtgccaatacctatggacaacgagcacacttgctggaaccctactttggttccgagtttaatttttgcaggcctcgccctctactgaacaagtactggatctttgcagcacaccggagtttaccatatgctctgaggccatcgaagagttcacatactatatcgtctgaggctgtcgaagagttataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

229

Amino Acids

26.52

Weight (kDa)

6.94

Isoelectric Point (pI)

42.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16060
fragaria_vesca FvH4_4g18820 FvH4_4g18820
malus_domestica MD16G1162300.v1.1
prunus_persica Prupe.1G129900_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0423631
rosa_laevigata RLG00000007540
rosa_multiflora Rmu_sc0000464.1_g000016 Rmu_sc0038723.1_g000001
rosa_roxburghii Rroxscaffold_5G00365840
rosa_rugosa Rorug04G0189200 Rorug04G0189200
rosa_samantha Rh4AG248800 Rh4BG254100 Rh4CG262100 Rh4DG249100
rosa_wichuraiana Rw4G021310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 690
AccBSI CCGCTC 1 cut(s) 154
AccIII TCCGGA 1 cut(s) 438
AciI CCGC 4 cut(s) 109, 154, 390, 499
AclWI GGATC 4 cut(s) 362, 447, 476, 610
AcsI RAATTY 2 cut(s) 94, 184
AdeI CACNNNGTG 1 cut(s) 306
AfaI GTAC 2 cut(s) 397, 598
AfiI CCNNNNNNNGG 3 cut(s) 19, 462, 550
AgsI TTSAA 1 cut(s) 55
AjuI GAANNNNNNNTTGG 2 cut(s) 533, 565
AluBI AGCT 1 cut(s) 231
AluI AGCT 1 cut(s) 231
Alw21I GWGCWC 2 cut(s) 168, 531
Alw26I GTCTC 1 cut(s) 365
AlwI GGATC 4 cut(s) 362, 447, 476, 610
Aor13HI TCCGGA 1 cut(s) 438
AoxI GGCC 2 cut(s) 574, 640
ApeKI GCWGC 2 cut(s) 313, 610
ApoI RAATTY 2 cut(s) 94, 184
AsuNHI GCTAGC 1 cut(s) 309
Bbv12I GWGCWC 2 cut(s) 168, 531
BbvI GCAGC 2 cut(s) 325, 622
BccI CCATC 4 cut(s) 124, 394, 489, 651
BcoDI GTCTC 1 cut(s) 365
BfaI CTAG 2 cut(s) 106, 310
BisI GCNGC 2 cut(s) 314, 611
BlsI GCNGC 2 cut(s) 315, 612
BmcAI AGTACT 2 cut(s) 397, 598
BmiI GGNNCC 4 cut(s) 11, 89, 542, 555
BmsI GCATC 1 cut(s) 190
BmtI GCTAGC 1 cut(s) 313
BpuEI CTTGAG 1 cut(s) 433
BsaI GGTCTC 1 cut(s) 365
BsaJI CCNNGG 1 cut(s) 366
BsaWI WCCGGW 2 cut(s) 438, 617
Bsc4I CCNNNNNNNGG 3 cut(s) 19, 462, 550
Bse1I ACTGG 1 cut(s) 604
BseAI TCCGGA 1 cut(s) 438
BseDI CCNNGG 1 cut(s) 366
BseGI GGATG 2 cut(s) 273, 386
BseLI CCNNNNNNNGG 3 cut(s) 19, 462, 550
BseMII CTCAG 2 cut(s) 628, 662
BseNI ACTGG 1 cut(s) 604
BseXI GCAGC 2 cut(s) 325, 622
BshFI GGCC 2 cut(s) 576, 642
BsiHKAI GWGCWC 2 cut(s) 168, 531
BsiSI CCGG 3 cut(s) 70, 439, 618
BslI CCNNNNNNNGG 3 cut(s) 19, 462, 550
BsmAI GTCTC 1 cut(s) 365
BsnI GGCC 2 cut(s) 576, 642
Bso31I GGTCTC 1 cut(s) 365
Bsp1286I GDGCHC 2 cut(s) 168, 531
Bsp13I TCCGGA 1 cut(s) 438
Bsp143I GATC 4 cut(s) 354, 452, 468, 602
BspACI CCGC 4 cut(s) 109, 154, 390, 499
BspANI GGCC 2 cut(s) 576, 642
BspCNI CTCAG 2 cut(s) 629, 663
BspEI TCCGGA 1 cut(s) 438
BspLI GGNNCC 4 cut(s) 11, 89, 542, 555
BspOI GCTAGC 1 cut(s) 313
BspPI GGATC 4 cut(s) 362, 447, 476, 610
BspQI GCTCTTC 1 cut(s) 425
BspTNI GGTCTC 1 cut(s) 365
BsrBI CCGCTC 1 cut(s) 154
BsrI ACTGG 1 cut(s) 604
BssECI CCNNGG 1 cut(s) 366
BssMI GATC 4 cut(s) 354, 452, 468, 602
BssT1I CCWWGG 1 cut(s) 366
Bst4CI ACNGT 3 cut(s) 42, 304, 376
Bst6I CTCTTC 3 cut(s) 425, 643, 677
BstC8I GCNNGC 3 cut(s) 311, 339, 574
BstDEI CTNAG 2 cut(s) 637, 671
BstENI CCTNNNNNAGG 1 cut(s) 17
BstF5I GGATG 2 cut(s) 273, 386
BstKTI GATC 4 cut(s) 357, 455, 471, 605
BstMAI GTCTC 1 cut(s) 365
BstMBI GATC 4 cut(s) 354, 452, 468, 602
BstMWI GCNNNNNNNGC 4 cut(s) 151, 237, 505, 578
BstNSI RCATGY 1 cut(s) 341
BstV1I GCAGC 2 cut(s) 325, 622
BstX2I RGATCY 2 cut(s) 452, 602
BstYI RGATCY 2 cut(s) 452, 602
BsuRI GGCC 2 cut(s) 576, 642
BtsCI GGATG 2 cut(s) 273, 386
BtsIMutI CAGTG 1 cut(s) 300
Cac8I GCNNGC 3 cut(s) 311, 339, 574
Csp6I GTAC 2 cut(s) 396, 597
CviAII CATG 2 cut(s) 338, 423
CviQI GTAC 2 cut(s) 396, 597
DdeI CTNAG 2 cut(s) 637, 671
DpnI GATC 4 cut(s) 356, 454, 470, 604
DpnII GATC 4 cut(s) 354, 452, 468, 602
DraIII CACNNNGTG 1 cut(s) 306
Eam1104I CTCTTC 3 cut(s) 425, 643, 677
EarI CTCTTC 3 cut(s) 425, 643, 677
Eco130I CCWWGG 1 cut(s) 366
Eco147I AGGCCT 1 cut(s) 576
Eco31I GGTCTC 1 cut(s) 365
Eco32I GATATC 1 cut(s) 273
EcoNI CCTNNNNNAGG 1 cut(s) 17
EcoRV GATATC 1 cut(s) 273
EcoT14I CCWWGG 1 cut(s) 366
ErhI CCWWGG 1 cut(s) 366
FaeI CATG 2 cut(s) 341, 426
FatI CATG 2 cut(s) 337, 422
FauI CCCGC 1 cut(s) 492
FauNDI CATATG 1 cut(s) 630
Fnu4HI GCNGC 2 cut(s) 314, 611
FokI GGATG 2 cut(s) 280, 373
Fsp4HI GCNGC 2 cut(s) 314, 611
FspBI CTAG 2 cut(s) 106, 310
GluI GCNGC 2 cut(s) 314, 611
HaeIII GGCC 2 cut(s) 576, 642
HapII CCGG 3 cut(s) 70, 439, 618
Hin1II CATG 2 cut(s) 341, 426
HinfI GANTC 6 cut(s) 66, 101, 194, 321, 419, 442
HpaII CCGG 3 cut(s) 70, 439, 618
Hpy166II GTNNAC 2 cut(s) 625, 655
Hpy188I TCNGA 6 cut(s) 63, 193, 199, 558, 638, 672
Hpy188III TCNNGA 4 cut(s) 81, 416, 439, 450
Hpy8I GTNNAC 2 cut(s) 625, 655
HpyAV CCTTC 2 cut(s) 13, 304
HpyCH4III ACNGT 3 cut(s) 42, 304, 376
HpyCH4V TGCA 4 cut(s) 203, 341, 572, 610
HpyF10VI GCNNNNNNNGC 4 cut(s) 151, 237, 505, 578
HpyF3I CTNAG 2 cut(s) 637, 671
Hsp92II CATG 2 cut(s) 341, 426
Kpn2I TCCGGA 1 cut(s) 438
Kzo9I GATC 4 cut(s) 354, 452, 468, 602
LguI GCTCTTC 1 cut(s) 425
LmnI GCTCC 2 cut(s) 9, 87
Lsp1109I GCAGC 2 cut(s) 325, 622
LweI GCATC 1 cut(s) 190
MaeI CTAG 2 cut(s) 106, 310
MaeIII GTNAC 3 cut(s) 36, 298, 457
MalI GATC 4 cut(s) 356, 454, 470, 604
MbiI CCGCTC 1 cut(s) 154
MboI GATC 4 cut(s) 354, 452, 468, 602
MboII GAAGA 4 cut(s) 193, 439, 442, 660
MflI RGATCY 2 cut(s) 452, 602
MhlI GDGCHC 2 cut(s) 168, 531
MluCI AATT 3 cut(s) 94, 184, 564
MlyI GAGTC 1 cut(s) 203
MnlI CCTC 8 cut(s) 77, 257, 446, 457, 587, 593, 632, 666
MroI TCCGGA 1 cut(s) 438
MseI TTAA 2 cut(s) 479, 563
MspI CCGG 3 cut(s) 70, 439, 618
MwoI GCNNNNNNNGC 4 cut(s) 151, 237, 505, 578
NdeI CATATG 1 cut(s) 630
NdeII GATC 4 cut(s) 354, 452, 468, 602
NheI GCTAGC 1 cut(s) 309
NlaIII CATG 2 cut(s) 341, 426
NlaIV GGNNCC 4 cut(s) 11, 89, 542, 555
NmuCI GTSAC 2 cut(s) 36, 298
NspI RCATGY 1 cut(s) 341
PaeI GCATGC 1 cut(s) 341
PceI AGGCCT 1 cut(s) 576
PciSI GCTCTTC 1 cut(s) 425
PfeI GAWTC 5 cut(s) 66, 101, 321, 419, 442
PkrI GCNGC 2 cut(s) 315, 612
PleI GAGTC 1 cut(s) 202
PpsI GAGTC 1 cut(s) 202
PsiI TTATAA 1 cut(s) 690
PspN4I GGNNCC 4 cut(s) 11, 89, 542, 555
PsuI RGATCY 2 cut(s) 452, 602
RsaI GTAC 2 cut(s) 397, 598
RsaNI GTAC 2 cut(s) 396, 597
SapI GCTCTTC 1 cut(s) 425
SaqAI TTAA 2 cut(s) 479, 563
SatI GCNGC 2 cut(s) 314, 611
Sau3AI GATC 4 cut(s) 354, 452, 468, 602
ScaI AGTACT 2 cut(s) 397, 598
SchI GAGTC 1 cut(s) 203
SduI GDGCHC 2 cut(s) 168, 531
SetI ASST 6 cut(s) 233, 282, 296, 414, 477, 517
SfaNI GCATC 1 cut(s) 190
SmlI CTYRAG 1 cut(s) 448
SmoI CTYRAG 1 cut(s) 448
SphI GCATGC 1 cut(s) 341
Sse9I AATT 3 cut(s) 94, 184, 564
SseBI AGGCCT 1 cut(s) 576
SsiI CCGC 4 cut(s) 109, 154, 390, 499
SspMI CTAG 2 cut(s) 106, 310
StuI AGGCCT 1 cut(s) 576
StyI CCWWGG 1 cut(s) 366
TaaI ACNGT 3 cut(s) 42, 304, 376
TaqI TCGA 5 cut(s) 99, 150, 471, 646, 680
TasI AATT 3 cut(s) 94, 184, 564
TatI WGTACW 2 cut(s) 395, 596
TfiI GAWTC 5 cut(s) 66, 101, 321, 419, 442
Tru1I TTAA 2 cut(s) 479, 563
Tru9I TTAA 2 cut(s) 479, 563
TscAI CASTG 1 cut(s) 307
TseFI GTSAC 2 cut(s) 36, 298
TseI GCWGC 2 cut(s) 313, 610
Tsp45I GTSAC 2 cut(s) 36, 298
TspDTI ATGAA 2 cut(s) 32, 194
TspGWI ACGGA 1 cut(s) 445
TspRI CASTG 1 cut(s) 307
XagI CCTNNNNNAGG 1 cut(s) 17
XapI RAATTY 2 cut(s) 94, 184
XceI RCATGY 1 cut(s) 341
XspI CTAG 2 cut(s) 106, 310
ZrmI AGTACT 2 cut(s) 397, 598
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.