FvH4_4g18820

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0014199
Physical Location & Seq
Reverse (-)
22631222 .. 22633684
2463 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g18820.t1

Sequence Viewer

Length: 924 bp
ATGACTGCCACTGCTCTCCGTCTCTCCCTCCCTCCATCTCCTTCTAAACCCCTCATTCCCGGCGCGTGTTCTCACCGCCAACCTCTCCACCTCACCTTCCCAACCCTCCACACCTCCCCCCACACTCCCTTCCTCCGCTCCTCCCACCACCGCCACCCTTCTCCGATCGCCATGTCCTCTATTTCCCCCCGATCATCCTTCCCGGAGACTCAAACACAACCGATCGAGCTCAACGACGAGTCCGAGTTCGAAACCATCGTCTCGCGCGACGGTTACATCTCCATCTGCGGCTTCGGCTCTCTCCTCTCCGTGAGAAGCGCGAGGAGTACATTTCCGGAGCTGATCAACTTCAGAGTGGCGCGGTTGAACGGATTCAAGCGAGTCTTCGGTCACATGGCTCCAATTTTCTTCGAGCGTGGCATTGCCAAGCCTGAAACCAAGGAGATTTCGAGTTTGAGTGTGGAGCCTTGTGAAGGCGAAAGCCTTATAGTGACGGTGTTTGAGATTCAAAAATCGGAGATTCCGGCTTTTATCAAGAGGGAGCCTGAGTTTCGATTCCTAGCTGTTGTGCCTGAAACCCTTGATGGGAATCCATTTGATAGACGAGCGGTGCTTTGTGCTCATTATAGTGATGAAGAATTTTTCAGAGTCAGATGCAAGGGAAGTAAGGAAATGTATTATGAGCTATTTGGCCGATATAACATTGATAAGATTTGGAGGGATGATATCTTACCTTGCCGAACTTACCTTCGTCACTGTGTGTTAGCAGCAAAAAATCTTAACGATATAGCATACAACAACTTCTTGGATCACACTTTCCTTGGAGACCGTAAAACAACCATTCGAGAGTACTTGGCTACAACTGGTTCGGGAATTATGGAAGAAGAGCCTCCGGAATCCCTCAAGATCCGTTATGGTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

308

Amino Acids

34.91

Weight (kDa)

7.17

Isoelectric Point (pI)

56.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16060
fragaria_vesca FvH4_4g18820 FvH4_4g18820
malus_domestica MD16G1162300.v1.1
prunus_persica Prupe.1G129900_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0423631
rosa_laevigata RLG00000007540
rosa_multiflora Rmu_sc0000464.1_g000016 Rmu_sc0038723.1_g000001
rosa_roxburghii Rroxscaffold_5G00365840
rosa_rugosa Rorug04G0189200 Rorug04G0189200
rosa_samantha Rh4AG248800 Rh4BG254100 Rh4CG262100 Rh4DG249100
rosa_wichuraiana Rw4G021310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 138, 608
AccII CGCG 5 cut(s) 65, 265, 267, 320, 361
AccIII TCCGGA 2 cut(s) 334, 892
AciI CCGC 6 cut(s) 76, 136, 151, 288, 361, 608
AclWI GGATC 2 cut(s) 816, 901
AcoI YGGCCR 1 cut(s) 691
AcsI RAATTY 1 cut(s) 638
AcuI CTGAAG 1 cut(s) 334
AdeI CACNNNGTG 1 cut(s) 760
AfaI GTAC 2 cut(s) 328, 851
AfiI CCNNNNNNNGG 2 cut(s) 473, 585
AgsI TTSAA 3 cut(s) 367, 376, 509
AluBI AGCT 4 cut(s) 229, 340, 563, 685
AluI AGCT 4 cut(s) 229, 340, 563, 685
Alw21I GWGCWC 2 cut(s) 231, 622
Alw26I GTCTC 4 cut(s) 26, 200, 265, 819
AlwI GGATC 2 cut(s) 816, 901
Aor13HI TCCGGA 2 cut(s) 334, 892
AoxI GGCC 1 cut(s) 691
ApeKI GCWGC 1 cut(s) 767
ApoI RAATTY 1 cut(s) 638
ArsI GACNNNNNNTTYG 2 cut(s) 243, 275
Asp700I GAANNNNTTC 1 cut(s) 371
AspLEI GCGC 4 cut(s) 65, 267, 320, 361
AsuC2I CCSGG 2 cut(s) 60, 203
AsuHPI GGTGA 2 cut(s) 65, 85
AsuII TTCGAA 1 cut(s) 249
BanII GRGCYC 1 cut(s) 231
BbsI GAAGAC 1 cut(s) 376
Bbv12I GWGCWC 2 cut(s) 231, 622
BbvI GCAGC 1 cut(s) 779
BccI CCATC 4 cut(s) 43, 263, 290, 578
BclI TGATCA 1 cut(s) 342
BcnI CCSGG 2 cut(s) 60, 203
BcoDI GTCTC 4 cut(s) 26, 200, 265, 819
BfaI CTAG 1 cut(s) 560
BisI GCNGC 2 cut(s) 289, 768
BlsI GCNGC 2 cut(s) 290, 769
BmcAI AGTACT 1 cut(s) 851
Bme1390I CCNGG 2 cut(s) 60, 203
BmiI GGNNCC 3 cut(s) 399, 465, 543
BmrFI CCNGG 2 cut(s) 60, 203
BmsI GCATC 1 cut(s) 644
BpiI GAAGAC 1 cut(s) 376
Bpu14I TTCGAA 1 cut(s) 249
BpuEI CTTGAG 1 cut(s) 887
BpuMI CCSGG 2 cut(s) 60, 203
BsaBI GATNNNNATC 1 cut(s) 588
BsaI GGTCTC 1 cut(s) 819
BsaJI CCNNGG 2 cut(s) 438, 820
BsaWI WCCGGW 2 cut(s) 334, 892
BsaXI ACNNNNNCTCC 2 cut(s) 533, 563
Bsc4I CCNNNNNNNGG 2 cut(s) 473, 585
Bse1I ACTGG 1 cut(s) 868
Bse3DI GCAATG 1 cut(s) 420
Bse8I GATNNNNATC 1 cut(s) 588
BseAI TCCGGA 2 cut(s) 334, 892
BseDI CCNNGG 2 cut(s) 438, 820
BseGI GGATG 2 cut(s) 194, 727
BseJI GATNNNNATC 1 cut(s) 588
BseLI CCNNNNNNNGG 2 cut(s) 473, 585
BseMI GCAATG 1 cut(s) 420
BseMII CTCAG 1 cut(s) 537
BseNI ACTGG 1 cut(s) 868
BseRI GAGGAG 3 cut(s) 130, 293, 337
BseXI GCAGC 1 cut(s) 779
Bsh1236I CGCG 5 cut(s) 65, 265, 267, 320, 361
Bsh1285I CGRYCG 2 cut(s) 168, 225
BshFI GGCC 1 cut(s) 693
BsiEI CGRYCG 2 cut(s) 168, 225
BsiHKAI GWGCWC 2 cut(s) 231, 622
BsiSI CCGG 5 cut(s) 60, 203, 335, 524, 893
BslI CCNNNNNNNGG 2 cut(s) 473, 585
BsmAI GTCTC 4 cut(s) 26, 200, 265, 819
BsmBI CGTCTC 2 cut(s) 26, 265
BsnI GGCC 1 cut(s) 693
Bso31I GGTCTC 1 cut(s) 819
Bsp119I TTCGAA 1 cut(s) 249
Bsp1286I GDGCHC 2 cut(s) 231, 622
Bsp13I TCCGGA 2 cut(s) 334, 892
Bsp143I GATC 6 cut(s) 165, 191, 222, 342, 808, 906
BspACI CCGC 6 cut(s) 76, 136, 151, 288, 361, 608
BspANI GGCC 1 cut(s) 693
BspCNI CTCAG 1 cut(s) 538
BspEI TCCGGA 2 cut(s) 334, 892
BspFNI CGCG 5 cut(s) 65, 265, 267, 320, 361
BspLI GGNNCC 3 cut(s) 399, 465, 543
BspPI GGATC 2 cut(s) 816, 901
BspQI GCTCTTC 1 cut(s) 879
BspT104I TTCGAA 1 cut(s) 249
BspTNI GGTCTC 1 cut(s) 819
BsrBI CCGCTC 2 cut(s) 138, 608
BsrDI GCAATG 1 cut(s) 420
BsrI ACTGG 1 cut(s) 868
BssECI CCNNGG 2 cut(s) 438, 820
BssMI GATC 6 cut(s) 165, 191, 222, 342, 808, 906
BssT1I CCWWGG 2 cut(s) 438, 820
Bst4CI ACNGT 4 cut(s) 272, 496, 758, 830
Bst6I CTCTTC 1 cut(s) 879
BstBI TTCGAA 1 cut(s) 249
BstDEI CTNAG 1 cut(s) 546
BstENI CCTNNNNNAGG 1 cut(s) 471
BstF5I GGATG 2 cut(s) 194, 727
BstFNI CGCG 5 cut(s) 65, 265, 267, 320, 361
BstHHI GCGC 4 cut(s) 65, 267, 320, 361
BstKTI GATC 6 cut(s) 168, 194, 225, 345, 811, 909
BstMAI GTCTC 4 cut(s) 26, 200, 265, 819
BstMBI GATC 6 cut(s) 165, 191, 222, 342, 808, 906
BstMCI CGRYCG 2 cut(s) 168, 225
BstMWI GCNNNNNNNGC 1 cut(s) 294
BstSCI CCNGG 2 cut(s) 58, 201
BstUI CGCG 5 cut(s) 65, 265, 267, 320, 361
BstV1I GCAGC 1 cut(s) 779
BstV2I GAAGAC 1 cut(s) 376
BstX2I RGATCY 1 cut(s) 906
BstYI RGATCY 1 cut(s) 906
BsuRI GGCC 1 cut(s) 693
BtsCI GGATG 2 cut(s) 194, 727
BtsI GCAGTG 1 cut(s) 9
BtsIMutI CAGTG 2 cut(s) 9, 754
CfoI GCGC 4 cut(s) 65, 267, 320, 361
Csp6I GTAC 2 cut(s) 327, 850
CviAII CATG 2 cut(s) 172, 394
CviQI GTAC 2 cut(s) 327, 850
DdeI CTNAG 1 cut(s) 546
DpnI GATC 6 cut(s) 167, 193, 224, 344, 810, 908
DpnII GATC 6 cut(s) 165, 191, 222, 342, 808, 906
DraIII CACNNNGTG 1 cut(s) 760
EaeI YGGCCR 1 cut(s) 691
Eam1104I CTCTTC 1 cut(s) 879
EarI CTCTTC 1 cut(s) 879
Ecl136II GAGCTC 1 cut(s) 229
Eco130I CCWWGG 2 cut(s) 438, 820
Eco24I GRGCYC 1 cut(s) 231
Eco31I GGTCTC 1 cut(s) 819
Eco32I GATATC 1 cut(s) 727
Eco53kI GAGCTC 1 cut(s) 229
Eco57I CTGAAG 1 cut(s) 334
EcoICRI GAGCTC 1 cut(s) 229
EcoNI CCTNNNNNAGG 1 cut(s) 471
EcoRV GATATC 1 cut(s) 727
EcoT14I CCWWGG 2 cut(s) 438, 820
EcoT38I GRGCYC 1 cut(s) 231
ErhI CCWWGG 2 cut(s) 438, 820
Esp3I CGTCTC 2 cut(s) 26, 265
FaeI CATG 2 cut(s) 175, 397
FalI AAGNNNNNCTT 2 cut(s) 368, 400
FatI CATG 2 cut(s) 171, 393
FbaI TGATCA 1 cut(s) 342
Fnu4HI GCNGC 2 cut(s) 289, 768
FokI GGATG 2 cut(s) 181, 734
FriOI GRGCYC 1 cut(s) 231
Fsp4HI GCNGC 2 cut(s) 289, 768
FspBI CTAG 1 cut(s) 560
GlaI GCGC 4 cut(s) 64, 266, 319, 360
GluI GCNGC 2 cut(s) 289, 768
HaeIII GGCC 1 cut(s) 693
HapII CCGG 5 cut(s) 60, 203, 335, 524, 893
HhaI GCGC 4 cut(s) 65, 267, 320, 361
Hin1II CATG 2 cut(s) 175, 397
Hin6I GCGC 4 cut(s) 63, 265, 318, 359
HinP1I GCGC 4 cut(s) 63, 265, 318, 359
HpaII CCGG 5 cut(s) 60, 203, 335, 524, 893
HphI GGTGA 2 cut(s) 65, 85
Hpy188I TCNGA 6 cut(s) 165, 244, 353, 517, 647, 653
Hpy188III TCNNGA 6 cut(s) 335, 535, 845, 870, 893, 904
Hpy99I CGWCG 2 cut(s) 239, 272
HpyAV CCTTC 7 cut(s) 51, 106, 139, 168, 208, 467, 758
HpyCH4III ACNGT 4 cut(s) 272, 496, 758, 830
HpyCH4V TGCA 1 cut(s) 657
HpyF10VI GCNNNNNNNGC 1 cut(s) 294
HpyF3I CTNAG 1 cut(s) 546
Hsp92II CATG 2 cut(s) 175, 397
HspAI GCGC 4 cut(s) 63, 265, 318, 359
Kpn2I TCCGGA 2 cut(s) 334, 892
Ksp22I TGATCA 1 cut(s) 342
Kzo9I GATC 6 cut(s) 165, 191, 222, 342, 808, 906
LguI GCTCTTC 1 cut(s) 879
LmnI GCTCC 5 cut(s) 143, 337, 403, 463, 541
LpnPI CCDG 9 cut(s) 73, 216, 348, 444, 537, 558, 585, 849, 906
Lsp1109I GCAGC 1 cut(s) 779
LweI GCATC 1 cut(s) 644
MaeI CTAG 1 cut(s) 560
MaeIII GTNAC 4 cut(s) 272, 389, 490, 752
MalI GATC 6 cut(s) 167, 193, 224, 344, 810, 908
MbiI CCGCTC 2 cut(s) 138, 608
MboI GATC 6 cut(s) 165, 191, 222, 342, 808, 906
MboII GAAGA 5 cut(s) 376, 400, 647, 893, 896
MflI RGATCY 1 cut(s) 906
MhlI GDGCHC 2 cut(s) 231, 622
MluCI AATT 3 cut(s) 402, 638, 873
MlyI GAGTC 4 cut(s) 202, 248, 390, 657
MroI TCCGGA 2 cut(s) 334, 892
MroXI GAANNNNTTC 1 cut(s) 371
MseI TTAA 2 cut(s) 780, 922
MslI CAYNNNNRTG 1 cut(s) 627
MspI CCGG 5 cut(s) 60, 203, 335, 524, 893
MspR9I CCNGG 2 cut(s) 60, 203
MvnI CGCG 5 cut(s) 65, 265, 267, 320, 361
MwoI GCNNNNNNNGC 1 cut(s) 294
NciI CCSGG 2 cut(s) 60, 203
NdeII GATC 6 cut(s) 165, 191, 222, 342, 808, 906
NlaIII CATG 2 cut(s) 175, 397
NlaIV GGNNCC 3 cut(s) 399, 465, 543
NmuCI GTSAC 3 cut(s) 389, 490, 752
NspV TTCGAA 1 cut(s) 249
PciSI GCTCTTC 1 cut(s) 879
PcsI WCGNNNNNNNCGW 4 cut(s) 231, 240, 255, 264
PdmI GAANNNNTTC 1 cut(s) 371
PfeI GAWTC 6 cut(s) 372, 505, 520, 555, 589, 896
PfoI TCCNGGA 1 cut(s) 201
PkrI GCNGC 2 cut(s) 290, 769
Ple19I CGATCG 2 cut(s) 168, 225
PleI GAGTC 4 cut(s) 202, 247, 389, 656
PpsI GAGTC 4 cut(s) 202, 247, 389, 656
Psp124BI GAGCTC 1 cut(s) 231
PspN4I GGNNCC 3 cut(s) 399, 465, 543
PsuI RGATCY 1 cut(s) 906
PvuI CGATCG 2 cut(s) 168, 225
RsaI GTAC 2 cut(s) 328, 851
RsaNI GTAC 2 cut(s) 327, 850
RseI CAYNNNNRTG 1 cut(s) 627
SacI GAGCTC 1 cut(s) 231
SapI GCTCTTC 1 cut(s) 879
SaqAI TTAA 2 cut(s) 780, 922
SatI GCNGC 2 cut(s) 289, 768
Sau3AI GATC 6 cut(s) 165, 191, 222, 342, 808, 906
ScaI AGTACT 1 cut(s) 851
SchI GAGTC 4 cut(s) 202, 248, 390, 657
ScrFI CCNGG 2 cut(s) 60, 203
SduI GDGCHC 2 cut(s) 231, 622
SfaNI GCATC 1 cut(s) 644
SfuI TTCGAA 1 cut(s) 249
SmiMI CAYNNNNRTG 1 cut(s) 627
SmlI CTYRAG 1 cut(s) 902
SmoI CTYRAG 1 cut(s) 902
Sse9I AATT 3 cut(s) 402, 638, 873
SsiI CCGC 6 cut(s) 76, 136, 151, 288, 361, 608
SspMI CTAG 1 cut(s) 560
SstI GAGCTC 1 cut(s) 231
StyD4I CCNGG 2 cut(s) 58, 201
StyI CCWWGG 2 cut(s) 438, 820
TaaI ACNGT 4 cut(s) 272, 496, 758, 830
TaqI TCGA 6 cut(s) 225, 249, 411, 449, 553, 844
TaqII GACCGA 1 cut(s) 377
TasI AATT 3 cut(s) 402, 638, 873
TatI WGTACW 2 cut(s) 326, 849
TauI GCSGC 1 cut(s) 291
TfiI GAWTC 6 cut(s) 372, 505, 520, 555, 589, 896
Tru1I TTAA 2 cut(s) 780, 922
Tru9I TTAA 2 cut(s) 780, 922
TscAI CASTG 2 cut(s) 16, 761
TseFI GTSAC 3 cut(s) 389, 490, 752
TseI GCWGC 1 cut(s) 767
Tsp45I GTSAC 3 cut(s) 389, 490, 752
TspDTI ATGAA 1 cut(s) 648
TspGWI ACGGA 4 cut(s) 8, 298, 384, 899
TspRI CASTG 2 cut(s) 16, 761
XagI CCTNNNNNAGG 1 cut(s) 471
XapI RAATTY 1 cut(s) 638
XmnI GAANNNNTTC 1 cut(s) 371
XspI CTAG 1 cut(s) 560
ZrmI AGTACT 1 cut(s) 851
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.