Rorug04G0189200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0014199
Physical Location & Seq
Forward (+)
32864082 .. 32870813
6732 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0189200.1

Sequence Viewer

Length: 843 bp
ATGGTTGAAGGGTATAACAGTGGAGGTTTGCTGGTTCGGTTTCATTCTTTAGTGGGTTTTCTTCCATTTCCACAATTGAGCCCATCACACTTTTGCCAAGAACCGGGGAAAGGCGTCCAGGAGATTGCAAAAGGATTACCTGGTTCTCTTATATCTGTTAAGGTAATCCAAGCAGATGAAGAGAACAAGAAACTGATATTCTCAGAAAAGGAAGCTGTCTGGTCCAAGTTTTCTGAGAAAATTAGTGTTGGGGATGTTTTTGAAGCTAGGGTTGGTTCTGTGGAGGATTATGGTGCTTTTGTTCATCTACTATTTCCTGATGGTCTTTATCATTTGACTGGACTAGTACACGTCTCGGAGGTTTCATGGGATCTAGTTCAGGATGTAAGAGACATTTTGTCGGAGGGCGATGCAGTAAGAGTTAAGATCATTAATATTGATCGAGAAAAGTCAAGAATCACATTATCAATTAAACAGTTGGAGGAAGACCCACTTTTAGAAACATTGGACAAAGTGATACCACAGGATGGCTCTGACGGTCCTGATTCTTTGAACCCTAACAATAGCAGTAATATAGAGCCTCTTCCAGGCCTTGAAGCCATTTTTAAAGAGCTACTACAGGAAGATGGAATAGATGATGTAGGAATCACTCGCCAAGGATTTGAGAAAAGGGTGGTTTCACAGGACCTGCAGCTTTGGCTTTCTAATTCACCAGCCATTAATCAGAAGTTTACTCTCCTTGCTCGGGCAGGAAGGCAGGTGCAGGAAATACAACTGACGACAACACTTGATCAGGAAGGTATAAAACAAGCACTCCAGCGAGTATTGGAGCGTGTCCCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

280

Amino Acids

31.08

Weight (kDa)

4.8

Isoelectric Point (pI)

45.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S1 PF00575 82 - 158 8e-18 S1 RNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16060
fragaria_vesca FvH4_4g18820 FvH4_4g18820
malus_domestica MD16G1162300.v1.1
prunus_persica Prupe.1G129900_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0423631
rosa_laevigata RLG00000007540
rosa_multiflora Rmu_sc0000464.1_g000016 Rmu_sc0038723.1_g000001
rosa_roxburghii Rroxscaffold_5G00365840
rosa_rugosa Rorug04G0189200 Rorug04G0189200
rosa_samantha Rh4AG248800 Rh4BG254100 Rh4CG262100 Rh4DG249100
rosa_wichuraiana Rw4G021310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 748
Acc36I ACCTGC 2 cut(s) 696, 748
AccB7I CCANNNNNTGG 1 cut(s) 527
AclWI GGATC 1 cut(s) 378
AcyI GRCGYC 1 cut(s) 114
AfaI GTAC 1 cut(s) 348
AfiI CCNNNNNNNGG 5 cut(s) 103, 110, 527, 587, 745
AflIII ACRYGT 1 cut(s) 349
AgsI TTSAA 4 cut(s) 8, 263, 553, 596
AhdI GACNNNNNGTC 1 cut(s) 397
AhlI ACTAGT 1 cut(s) 343
AjiI CACGTC 1 cut(s) 352
AjnI CCWGG 3 cut(s) 117, 139, 586
AjuI GAANNNNNNNTTGG 2 cut(s) 255, 287
AluBI AGCT 4 cut(s) 215, 266, 613, 694
AluI AGCT 4 cut(s) 215, 266, 613, 694
Alw26I GTCTC 2 cut(s) 358, 384
AlwI GGATC 1 cut(s) 378
AlwNI CAGNNNCTG 1 cut(s) 688
Ama87I CYCGRG 1 cut(s) 744
AoxI GGCC 1 cut(s) 589
ApeKI GCWGC 1 cut(s) 691
AseI ATTAAT 2 cut(s) 432, 720
AspS9I GGNCC 3 cut(s) 222, 539, 685
AsuC2I CCSGG 1 cut(s) 105
AsuHPI GGTGA 1 cut(s) 702
AvaI CYCGRG 1 cut(s) 744
AvaII GGWCC 3 cut(s) 222, 539, 685
BanII GRGCYC 1 cut(s) 83
BbsI GAAGAC 1 cut(s) 492
BbvI GCAGC 1 cut(s) 703
BccI CCATC 4 cut(s) 91, 314, 521, 620
BciT130I CCWGG 3 cut(s) 119, 141, 588
BclI TGATCA 1 cut(s) 790
BcnI CCSGG 1 cut(s) 105
BcoDI GTCTC 2 cut(s) 358, 384
BcuI ACTAGT 1 cut(s) 343
BfaI CTAG 3 cut(s) 267, 344, 374
BfmI CTRYAG 2 cut(s) 617, 689
BfuAI ACCTGC 2 cut(s) 696, 748
BisI GCNGC 1 cut(s) 692
BlsI GCNGC 1 cut(s) 693
Bme1390I CCNGG 4 cut(s) 105, 119, 141, 588
Bme18I GGWCC 3 cut(s) 222, 539, 685
BmeRI GACNNNNNGTC 1 cut(s) 397
BmeT110I CYCGRG 1 cut(s) 744
BmgBI CACGTC 1 cut(s) 352
BmgT120I GGNCC 3 cut(s) 222, 539, 685
BmrFI CCNGG 4 cut(s) 105, 119, 141, 588
BmsI GCATC 1 cut(s) 400
BpiI GAAGAC 1 cut(s) 492
BpmI CTGGAG 1 cut(s) 800
BpuMI CCSGG 1 cut(s) 105
BsaHI GRCGYC 1 cut(s) 114
BsaJI CCNNGG 2 cut(s) 104, 655
BsaXI ACNNNNNCTCC 2 cut(s) 798, 828
Bsc4I CCNNNNNNNGG 5 cut(s) 103, 110, 527, 587, 745
Bse1I ACTGG 1 cut(s) 343
BseBI CCWGG 3 cut(s) 119, 141, 588
BseDI CCNNGG 2 cut(s) 104, 655
BseGI GGATG 3 cut(s) 259, 388, 532
BseLI CCNNNNNNNGG 5 cut(s) 103, 110, 527, 587, 745
BseMII CTCAG 2 cut(s) 216, 225
BseNI ACTGG 1 cut(s) 343
BseXI GCAGC 1 cut(s) 703
BsgI GTGCAG 1 cut(s) 782
BshFI GGCC 1 cut(s) 591
BsiHKCI CYCGRG 1 cut(s) 744
BsiSI CCGG 1 cut(s) 104
BslFI GGGAC 1 cut(s) 821
BslI CCNNNNNNNGG 5 cut(s) 103, 110, 527, 587, 745
BsmAI GTCTC 2 cut(s) 358, 384
BsmBI CGTCTC 1 cut(s) 358
BsmFI GGGAC 1 cut(s) 821
BsnI GGCC 1 cut(s) 591
BsoBI CYCGRG 1 cut(s) 744
Bsp1286I GDGCHC 1 cut(s) 83
Bsp143I GATC 4 cut(s) 370, 426, 439, 790
BspANI GGCC 1 cut(s) 591
BspCNI CTCAG 2 cut(s) 215, 226
BspMAI CTGCAG 1 cut(s) 693
BspMI ACCTGC 2 cut(s) 696, 748
BspPI GGATC 1 cut(s) 378
BsrI ACTGG 1 cut(s) 343
BssECI CCNNGG 2 cut(s) 104, 655
BssMI GATC 4 cut(s) 370, 426, 439, 790
BssNI GRCGYC 1 cut(s) 114
BssT1I CCWWGG 1 cut(s) 655
Bst2UI CCWGG 3 cut(s) 119, 141, 588
Bst4CI ACNGT 3 cut(s) 20, 477, 539
Bst6I CTCTTC 2 cut(s) 174, 588
BstACI GRCGYC 1 cut(s) 114
BstDEI CTNAG 2 cut(s) 202, 234
BstENI CCTNNNNNAGG 1 cut(s) 585
BstF5I GGATG 3 cut(s) 259, 388, 532
BstKTI GATC 4 cut(s) 373, 429, 442, 793
BstMAI GTCTC 2 cut(s) 358, 384
BstMBI GATC 4 cut(s) 370, 426, 439, 790
BstMWI GCNNNNNNNGC 1 cut(s) 697
BstNI CCWGG 3 cut(s) 119, 141, 588
BstSCI CCNGG 4 cut(s) 103, 117, 139, 586
BstSFI CTRYAG 2 cut(s) 617, 689
BstV1I GCAGC 1 cut(s) 703
BstV2I GAAGAC 1 cut(s) 492
BstX2I RGATCY 1 cut(s) 370
BstYI RGATCY 1 cut(s) 370
BsuRI GGCC 1 cut(s) 591
BtgZI GCGATG 1 cut(s) 423
BtrI CACGTC 1 cut(s) 352
BtsCI GGATG 3 cut(s) 259, 388, 532
BtsIMutI CAGTG 1 cut(s) 25
BveI ACCTGC 2 cut(s) 696, 748
CaiI CAGNNNCTG 1 cut(s) 688
Cfr13I GGNCC 3 cut(s) 222, 539, 685
CseI GACGC 1 cut(s) 103
CsiI ACCWGGT 1 cut(s) 139
Csp6I GTAC 1 cut(s) 347
CviAII CATG 1 cut(s) 366
CviQI GTAC 1 cut(s) 347
DdeI CTNAG 2 cut(s) 202, 234
DpnI GATC 4 cut(s) 372, 428, 441, 792
DpnII GATC 4 cut(s) 370, 426, 439, 790
DraI TTTAAA 1 cut(s) 607
DriI GACNNNNNGTC 1 cut(s) 397
Eam1104I CTCTTC 2 cut(s) 174, 588
Eam1105I GACNNNNNGTC 1 cut(s) 397
EarI CTCTTC 2 cut(s) 174, 588
Eco130I CCWWGG 1 cut(s) 655
Eco147I AGGCCT 1 cut(s) 591
Eco24I GRGCYC 1 cut(s) 83
Eco47I GGWCC 3 cut(s) 222, 539, 685
Eco88I CYCGRG 1 cut(s) 744
EcoNI CCTNNNNNAGG 1 cut(s) 585
EcoO109I RGGNCCY 1 cut(s) 685
EcoRII CCWGG 3 cut(s) 117, 139, 586
EcoT14I CCWWGG 1 cut(s) 655
EcoT38I GRGCYC 1 cut(s) 83
ErhI CCWWGG 1 cut(s) 655
Esp3I CGTCTC 1 cut(s) 358
FaeI CATG 1 cut(s) 369
FaiI YATR 6 cut(s) 15, 152, 291, 367, 575, 803
FalI AAGNNNNNCTT 2 cut(s) 477, 509
FaqI GGGAC 1 cut(s) 821
FatI CATG 1 cut(s) 365
FbaI TGATCA 1 cut(s) 790
Fnu4HI GCNGC 1 cut(s) 692
FokI GGATG 3 cut(s) 266, 395, 539
FriOI GRGCYC 1 cut(s) 83
Fsp4HI GCNGC 1 cut(s) 692
FspBI CTAG 3 cut(s) 267, 344, 374
GluI GCNGC 1 cut(s) 692
GsuI CTGGAG 1 cut(s) 800
HaeIII GGCC 1 cut(s) 591
HapII CCGG 1 cut(s) 104
HgaI GACGC 1 cut(s) 103
Hin1I GRCGYC 1 cut(s) 114
Hin1II CATG 1 cut(s) 369
HinfI GANTC 3 cut(s) 456, 545, 645
HpaII CCGG 1 cut(s) 104
HphI GGTGA 1 cut(s) 702
Hpy166II GTNNAC 2 cut(s) 349, 732
Hpy188I TCNGA 6 cut(s) 205, 235, 358, 403, 535, 726
Hpy188III TCNNGA 6 cut(s) 317, 380, 443, 453, 542, 794
Hpy8I GTNNAC 2 cut(s) 349, 732
HpyAV CCTTC 2 cut(s) 747, 791
HpyCH4III ACNGT 3 cut(s) 20, 477, 539
HpyCH4IV ACGT 1 cut(s) 351
HpyCH4V TGCA 4 cut(s) 128, 413, 691, 763
HpyF10VI GCNNNNNNNGC 1 cut(s) 697
HpyF3I CTNAG 2 cut(s) 202, 234
HpySE526I ACGT 1 cut(s) 351
Hsp92I GRCGYC 1 cut(s) 114
Hsp92II CATG 1 cut(s) 369
Ksp22I TGATCA 1 cut(s) 790
Kzo9I GATC 4 cut(s) 370, 426, 439, 790
LmnI GCTCC 1 cut(s) 829
Lsp1109I GCAGC 1 cut(s) 703
LweI GCATC 1 cut(s) 400
MabI ACCWGGT 1 cut(s) 139
MaeI CTAG 3 cut(s) 267, 344, 374
MaeII ACGT 1 cut(s) 351
MalI GATC 4 cut(s) 372, 428, 441, 792
MboI GATC 4 cut(s) 370, 426, 439, 790
MboII GAAGA 5 cut(s) 53, 191, 497, 575, 635
MfeI CAATTG 1 cut(s) 74
MflI RGATCY 1 cut(s) 370
MhlI GDGCHC 1 cut(s) 83
MluCI AATT 4 cut(s) 74, 240, 468, 706
MmeI TCCRAC 2 cut(s) 381, 459
MnlI CCTC 6 cut(s) 17, 277, 352, 397, 475, 591
MseI TTAA 6 cut(s) 159, 423, 432, 471, 606, 720
MspI CCGG 1 cut(s) 104
MspR9I CCNGG 4 cut(s) 105, 119, 141, 588
MunI CAATTG 1 cut(s) 74
MvaI CCWGG 3 cut(s) 119, 141, 588
MwoI GCNNNNNNNGC 1 cut(s) 697
NciI CCSGG 1 cut(s) 105
NdeII GATC 4 cut(s) 370, 426, 439, 790
NlaIII CATG 1 cut(s) 369
PaqCI CACCTGC 1 cut(s) 748
PceI AGGCCT 1 cut(s) 591
PfeI GAWTC 3 cut(s) 456, 545, 645
PflMI CCANNNNNTGG 1 cut(s) 527
PfoI TCCNGGA 1 cut(s) 117
PkrI GCNGC 1 cut(s) 693
PpuMI RGGWCCY 1 cut(s) 685
PshBI ATTAAT 2 cut(s) 432, 720
Psp5II RGGWCCY 1 cut(s) 685
Psp6I CCWGG 3 cut(s) 117, 139, 586
PspGI CCWGG 3 cut(s) 117, 139, 586
PspPI GGNCC 3 cut(s) 222, 539, 685
PspPPI RGGWCCY 1 cut(s) 685
PstI CTGCAG 1 cut(s) 693
PstNI CAGNNNCTG 1 cut(s) 688
PsuI RGATCY 1 cut(s) 370
RsaI GTAC 1 cut(s) 348
RsaNI GTAC 1 cut(s) 347
SaqAI TTAA 6 cut(s) 159, 423, 432, 471, 606, 720
SatI GCNGC 1 cut(s) 692
Sau3AI GATC 4 cut(s) 370, 426, 439, 790
Sau96I GGNCC 3 cut(s) 222, 539, 685
ScrFI CCNGG 4 cut(s) 105, 119, 141, 588
SduI GDGCHC 1 cut(s) 83
SexAI ACCWGGT 1 cut(s) 139
SfaNI GCATC 1 cut(s) 400
SfcI CTRYAG 2 cut(s) 617, 689
SinI GGWCC 3 cut(s) 222, 539, 685
SpeI ACTAGT 1 cut(s) 343
Sse9I AATT 4 cut(s) 74, 240, 468, 706
SseBI AGGCCT 1 cut(s) 591
SspI AATATT 1 cut(s) 436
SspMI CTAG 3 cut(s) 267, 344, 374
StuI AGGCCT 1 cut(s) 591
StyD4I CCNGG 4 cut(s) 103, 117, 139, 586
StyI CCWWGG 1 cut(s) 655
TaaI ACNGT 3 cut(s) 20, 477, 539
TaiI ACGT 1 cut(s) 354
TaqI TCGA 1 cut(s) 442
TasI AATT 4 cut(s) 74, 240, 468, 706
TatI WGTACW 1 cut(s) 346
TfiI GAWTC 3 cut(s) 456, 545, 645
Tru1I TTAA 6 cut(s) 159, 423, 432, 471, 606, 720
Tru9I TTAA 6 cut(s) 159, 423, 432, 471, 606, 720
TscAI CASTG 1 cut(s) 25
TseI GCWGC 1 cut(s) 691
TspDTI ATGAA 4 cut(s) 32, 192, 293, 354
TspRI CASTG 1 cut(s) 25
Van91I CCANNNNNTGG 1 cut(s) 527
VpaK11BI GGWCC 3 cut(s) 222, 539, 685
VspI ATTAAT 2 cut(s) 432, 720
XagI CCTNNNNNAGG 1 cut(s) 585
XspI CTAG 3 cut(s) 267, 344, 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.