RLG00000007540

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0014199
Physical Location & Seq
Forward (+)
17961801 .. 17963834
2034 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007540

Sequence Viewer

Length: 930 bp
ATGACTACCACTGCTCTCCGTCTCTCCCTCCCTCCATCTCCTCAATCACTCGCTCCAGGCGCGTGTCCTCACTGCCAACCTCTCTCCCACACCCACCTCACCTTCCCAACCCTCCACAGCTCCACCCACACTCCACTCCTCCGCTCCTCCCATCACCGCCATCCATCTCTGGTCGCCATGTCCTCCGATTCCGGCCGATCAGTCTCTCCGGCGACTCAACCCCAACCGATCGAGCTGAACGACGAGTCCGAATTCGAAACCATCGTCTCGCCCGACGCTTACATCTCCATCTGCGGCTTCGGCTCTCTCCTCTCTGAGAGAAGCGCGAGGAGTACATTTCCGGAGCTGATCAACTTCAGAGTGGCGCGGTTGAACGGATTCCGGCGAGTCTTCGCTCACATGGCTCCGATTTTCTTCGAGCGTGGCATTGCCAAGCCTGAAACCAAGGAAATTTCGAGTTTGAGTGTGGAGCCTTATGAAGGCGAAAGCCTTATAGTGACAGTGTTTGAGATTGAAAAATCGGAGATTCCGGCTTTTATCAAGAGGGAGCCTGAATTTCGATTCCTAGCGGTTCTGCCTGAAAGCCTTGATGGGAAGCCATTTGATAATCGAGCGGTGCTTTGTGCTCGTTATAGTGATGAAGAATTTTTCAGAGTCAGATGCAAAGGAAGTAAGGAAATGTATTTTGAGCTATTTGGGCGATATAACATTGATAAGATTTGGAGGGATGATATCTTACCTTGCCGAACTTACCTTCGTCACTGTGTGTTAGCAGCAAAGAATCTCAACGATATAGCATACAACAACTTCTTGGATCACACTTTCCTTGGAGACCGTAAAACAACCATCCGCAAGTACTTGGCTACAACAGGTTCGGGAATCATGGAAGAAGAGCCTCCGGAATCCCTCAAGATCCGTTACGGTGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

310

Amino Acids

34.96

Weight (kDa)

6.6

Isoelectric Point (pI)

57.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16060
fragaria_vesca FvH4_4g18820 FvH4_4g18820
malus_domestica MD16G1162300.v1.1
prunus_persica Prupe.1G129900_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0423631
rosa_laevigata RLG00000007540
rosa_multiflora Rmu_sc0000464.1_g000016 Rmu_sc0038723.1_g000001
rosa_roxburghii Rroxscaffold_5G00365840
rosa_rugosa Rorug04G0189200 Rorug04G0189200
rosa_samantha Rh4AG248800 Rh4BG254100 Rh4CG262100 Rh4DG249100
rosa_wichuraiana Rw4G021310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 144, 614
AccII CGCG 3 cut(s) 62, 326, 367
AccIII TCCGGA 2 cut(s) 340, 898
AciI CCGC 7 cut(s) 142, 157, 294, 367, 569, 614, 850
AclWI GGATC 2 cut(s) 822, 907
AcoI YGGCCR 1 cut(s) 193
AcsI RAATTY 4 cut(s) 251, 450, 554, 644
AcuI CTGAAG 1 cut(s) 340
AdeI CACNNNGTG 1 cut(s) 766
AfaI GTAC 2 cut(s) 334, 857
AfiI CCNNNNNNNGG 1 cut(s) 479
AgsI TTSAA 2 cut(s) 373, 515
AjnI CCWGG 1 cut(s) 55
AloI GAACNNNNNNTCC 2 cut(s) 230, 262
AluBI AGCT 4 cut(s) 120, 235, 346, 691
AluI AGCT 4 cut(s) 120, 235, 346, 691
Alw21I GWGCWC 1 cut(s) 628
Alw26I GTCTC 4 cut(s) 26, 208, 271, 825
AlwI GGATC 2 cut(s) 822, 907
Aor13HI TCCGGA 2 cut(s) 340, 898
AoxI GGCC 1 cut(s) 193
ApeKI GCWGC 1 cut(s) 773
ApoI RAATTY 4 cut(s) 251, 450, 554, 644
ArsI GACNNNNNNTTYG 2 cut(s) 249, 281
Asp700I GAANNNNTTC 1 cut(s) 377
AspLEI GCGC 3 cut(s) 62, 326, 367
AsuHPI GGTGA 2 cut(s) 91, 146
AsuII TTCGAA 1 cut(s) 255
BbsI GAAGAC 1 cut(s) 382
Bbv12I GWGCWC 1 cut(s) 628
BbvI GCAGC 1 cut(s) 785
BccI CCATC 8 cut(s) 43, 159, 168, 172, 269, 296, 584, 854
BciT130I CCWGG 1 cut(s) 57
BclI TGATCA 1 cut(s) 348
BcoDI GTCTC 4 cut(s) 26, 208, 271, 825
BfaI CTAG 1 cut(s) 566
BisI GCNGC 2 cut(s) 295, 774
BlsI GCNGC 2 cut(s) 296, 775
BmcAI AGTACT 1 cut(s) 857
Bme1390I CCNGG 1 cut(s) 57
BmiI GGNNCC 3 cut(s) 405, 471, 549
BmrFI CCNGG 1 cut(s) 57
BmsI GCATC 1 cut(s) 650
BpiI GAAGAC 1 cut(s) 382
BpmI CTGGAG 1 cut(s) 39
Bpu14I TTCGAA 1 cut(s) 255
BpuEI CTTGAG 1 cut(s) 893
BsaI GGTCTC 1 cut(s) 825
BsaJI CCNNGG 2 cut(s) 444, 826
BsaWI WCCGGW 2 cut(s) 340, 898
BsaXI ACNNNNNCTCC 2 cut(s) 115, 145
Bsc4I CCNNNNNNNGG 1 cut(s) 479
Bse3DI GCAATG 1 cut(s) 426
BseAI TCCGGA 2 cut(s) 340, 898
BseBI CCWGG 1 cut(s) 57
BseDI CCNNGG 2 cut(s) 444, 826
BseGI GGATG 3 cut(s) 160, 733, 846
BseLI CCNNNNNNNGG 1 cut(s) 479
BseMI GCAATG 1 cut(s) 426
BseMII CTCAG 1 cut(s) 306
BseRI GAGGAG 5 cut(s) 30, 128, 136, 299, 343
BseX3I CGGCCG 1 cut(s) 193
BseXI GCAGC 1 cut(s) 785
Bsh1236I CGCG 3 cut(s) 62, 326, 367
Bsh1285I CGRYCG 2 cut(s) 196, 231
BshFI GGCC 1 cut(s) 195
BsiEI CGRYCG 2 cut(s) 196, 231
BsiHKAI GWGCWC 1 cut(s) 628
BsiSI CCGG 6 cut(s) 192, 209, 341, 382, 530, 899
BslI CCNNNNNNNGG 1 cut(s) 479
BsmAI GTCTC 4 cut(s) 26, 208, 271, 825
BsmBI CGTCTC 2 cut(s) 26, 271
BsnI GGCC 1 cut(s) 195
Bso31I GGTCTC 1 cut(s) 825
Bsp119I TTCGAA 1 cut(s) 255
Bsp1286I GDGCHC 1 cut(s) 628
Bsp13I TCCGGA 2 cut(s) 340, 898
Bsp143I GATC 5 cut(s) 197, 228, 348, 814, 912
BspACI CCGC 7 cut(s) 142, 157, 294, 367, 569, 614, 850
BspANI GGCC 1 cut(s) 195
BspCNI CTCAG 1 cut(s) 307
BspEI TCCGGA 2 cut(s) 340, 898
BspFNI CGCG 3 cut(s) 62, 326, 367
BspLI GGNNCC 3 cut(s) 405, 471, 549
BspPI GGATC 2 cut(s) 822, 907
BspQI GCTCTTC 1 cut(s) 885
BspT104I TTCGAA 1 cut(s) 255
BspTNI GGTCTC 1 cut(s) 825
BsrBI CCGCTC 2 cut(s) 144, 614
BsrDI GCAATG 1 cut(s) 426
BssECI CCNNGG 2 cut(s) 444, 826
BssMI GATC 5 cut(s) 197, 228, 348, 814, 912
BssT1I CCWWGG 2 cut(s) 444, 826
Bst2UI CCWGG 1 cut(s) 57
Bst4CI ACNGT 4 cut(s) 502, 764, 836, 923
Bst6I CTCTTC 1 cut(s) 885
BstBI TTCGAA 1 cut(s) 255
BstDEI CTNAG 1 cut(s) 315
BstENI CCTNNNNNAGG 1 cut(s) 477
BstF5I GGATG 3 cut(s) 160, 733, 846
BstFNI CGCG 3 cut(s) 62, 326, 367
BstHHI GCGC 3 cut(s) 62, 326, 367
BstKTI GATC 5 cut(s) 200, 231, 351, 817, 915
BstMAI GTCTC 4 cut(s) 26, 208, 271, 825
BstMBI GATC 5 cut(s) 197, 228, 348, 814, 912
BstMCI CGRYCG 2 cut(s) 196, 231
BstMWI GCNNNNNNNGC 4 cut(s) 59, 300, 401, 697
BstNI CCWGG 1 cut(s) 57
BstSCI CCNGG 1 cut(s) 55
BstUI CGCG 3 cut(s) 62, 326, 367
BstV1I GCAGC 1 cut(s) 785
BstV2I GAAGAC 1 cut(s) 382
BstX2I RGATCY 1 cut(s) 912
BstYI RGATCY 1 cut(s) 912
BstZI CGGCCG 1 cut(s) 193
BsuRI GGCC 1 cut(s) 195
BtsCI GGATG 3 cut(s) 160, 733, 846
BtsI GCAGTG 2 cut(s) 9, 70
BtsIMutI CAGTG 4 cut(s) 9, 70, 507, 760
CfoI GCGC 3 cut(s) 62, 326, 367
CseI GACGC 1 cut(s) 284
Csp6I GTAC 2 cut(s) 333, 856
CviAII CATG 3 cut(s) 178, 400, 883
CviQI GTAC 2 cut(s) 333, 856
DdeI CTNAG 1 cut(s) 315
DpnI GATC 5 cut(s) 199, 230, 350, 816, 914
DpnII GATC 5 cut(s) 197, 228, 348, 814, 912
DraIII CACNNNGTG 1 cut(s) 766
EaeI YGGCCR 1 cut(s) 193
EagI CGGCCG 1 cut(s) 193
Eam1104I CTCTTC 1 cut(s) 885
EarI CTCTTC 1 cut(s) 885
EclXI CGGCCG 1 cut(s) 193
Eco130I CCWWGG 2 cut(s) 444, 826
Eco31I GGTCTC 1 cut(s) 825
Eco32I GATATC 1 cut(s) 733
Eco52I CGGCCG 1 cut(s) 193
Eco57I CTGAAG 1 cut(s) 340
EcoNI CCTNNNNNAGG 1 cut(s) 477
EcoRI GAATTC 1 cut(s) 251
EcoRII CCWGG 1 cut(s) 55
EcoRV GATATC 1 cut(s) 733
EcoT14I CCWWGG 2 cut(s) 444, 826
ErhI CCWWGG 2 cut(s) 444, 826
Esp3I CGTCTC 2 cut(s) 26, 271
FaeI CATG 3 cut(s) 181, 403, 886
FaiI YATR 9 cut(s) 179, 401, 477, 494, 633, 705, 794, 799, 884
FatI CATG 3 cut(s) 177, 399, 882
FbaI TGATCA 1 cut(s) 348
Fnu4HI GCNGC 2 cut(s) 295, 774
FokI GGATG 3 cut(s) 147, 740, 833
Fsp4HI GCNGC 2 cut(s) 295, 774
FspBI CTAG 1 cut(s) 566
GlaI GCGC 3 cut(s) 61, 325, 366
GluI GCNGC 2 cut(s) 295, 774
GsuI CTGGAG 1 cut(s) 39
HaeIII GGCC 1 cut(s) 195
HapII CCGG 6 cut(s) 192, 209, 341, 382, 530, 899
HgaI GACGC 1 cut(s) 284
HhaI GCGC 3 cut(s) 62, 326, 367
Hin1II CATG 3 cut(s) 181, 403, 886
Hin6I GCGC 3 cut(s) 60, 324, 365
HinP1I GCGC 3 cut(s) 60, 324, 365
HpaII CCGG 6 cut(s) 192, 209, 341, 382, 530, 899
HphI GGTGA 2 cut(s) 91, 146
Hpy188I TCNGA 8 cut(s) 187, 250, 316, 359, 408, 523, 653, 659
Hpy188III TCNNGA 5 cut(s) 341, 541, 876, 899, 910
Hpy99I CGWCG 2 cut(s) 245, 278
HpyAV CCTTC 3 cut(s) 112, 473, 764
HpyCH4III ACNGT 4 cut(s) 502, 764, 836, 923
HpyCH4V TGCA 1 cut(s) 663
HpyF10VI GCNNNNNNNGC 4 cut(s) 59, 300, 401, 697
HpyF3I CTNAG 1 cut(s) 315
Hsp92II CATG 3 cut(s) 181, 403, 886
HspAI GCGC 3 cut(s) 60, 324, 365
Kpn2I TCCGGA 2 cut(s) 340, 898
Ksp22I TGATCA 1 cut(s) 348
Kzo9I GATC 5 cut(s) 197, 228, 348, 814, 912
LguI GCTCTTC 1 cut(s) 885
LmnI GCTCC 7 cut(s) 58, 125, 149, 343, 409, 469, 547
Lsp1109I GCAGC 1 cut(s) 785
LweI GCATC 1 cut(s) 650
MaeI CTAG 1 cut(s) 566
MaeIII GTNAC 3 cut(s) 496, 758, 917
MalI GATC 5 cut(s) 199, 230, 350, 816, 914
MbiI CCGCTC 2 cut(s) 144, 614
MboI GATC 5 cut(s) 197, 228, 348, 814, 912
MboII GAAGA 5 cut(s) 382, 406, 653, 899, 902
MflI RGATCY 1 cut(s) 912
MhlI GDGCHC 1 cut(s) 628
MluCI AATT 4 cut(s) 251, 450, 554, 644
MlyI GAGTC 4 cut(s) 208, 254, 396, 663
MroI TCCGGA 2 cut(s) 340, 898
MroXI GAANNNNTTC 1 cut(s) 377
MspI CCGG 6 cut(s) 192, 209, 341, 382, 530, 899
MspR9I CCNGG 1 cut(s) 57
MvaI CCWGG 1 cut(s) 57
MvnI CGCG 3 cut(s) 62, 326, 367
MwoI GCNNNNNNNGC 4 cut(s) 59, 300, 401, 697
NdeII GATC 5 cut(s) 197, 228, 348, 814, 912
NlaIII CATG 3 cut(s) 181, 403, 886
NlaIV GGNNCC 3 cut(s) 405, 471, 549
NmuCI GTSAC 2 cut(s) 496, 758
NspV TTCGAA 1 cut(s) 255
PciSI GCTCTTC 1 cut(s) 885
PcsI WCGNNNNNNNCGW 4 cut(s) 237, 246, 261, 270
PdmI GAANNNNTTC 1 cut(s) 377
PfeI GAWTC 7 cut(s) 188, 378, 526, 561, 781, 879, 902
PkrI GCNGC 2 cut(s) 296, 775
Ple19I CGATCG 1 cut(s) 231
PleI GAGTC 4 cut(s) 208, 253, 395, 662
PpsI GAGTC 4 cut(s) 208, 253, 395, 662
Psp6I CCWGG 1 cut(s) 55
PspGI CCWGG 1 cut(s) 55
PspN4I GGNNCC 3 cut(s) 405, 471, 549
PsuI RGATCY 1 cut(s) 912
PvuI CGATCG 1 cut(s) 231
RsaI GTAC 2 cut(s) 334, 857
RsaNI GTAC 2 cut(s) 333, 856
SapI GCTCTTC 1 cut(s) 885
SatI GCNGC 2 cut(s) 295, 774
Sau3AI GATC 5 cut(s) 197, 228, 348, 814, 912
ScaI AGTACT 1 cut(s) 857
SchI GAGTC 4 cut(s) 208, 254, 396, 663
ScrFI CCNGG 1 cut(s) 57
SduI GDGCHC 1 cut(s) 628
SfaNI GCATC 1 cut(s) 650
SfuI TTCGAA 1 cut(s) 255
SmlI CTYRAG 1 cut(s) 908
SmoI CTYRAG 1 cut(s) 908
Sse9I AATT 4 cut(s) 251, 450, 554, 644
SsiI CCGC 7 cut(s) 142, 157, 294, 367, 569, 614, 850
SspMI CTAG 1 cut(s) 566
StyD4I CCNGG 1 cut(s) 55
StyI CCWWGG 2 cut(s) 444, 826
TaaI ACNGT 4 cut(s) 502, 764, 836, 923
TaqI TCGA 6 cut(s) 231, 255, 417, 455, 559, 610
TasI AATT 4 cut(s) 251, 450, 554, 644
TatI WGTACW 2 cut(s) 332, 855
TauI GCSGC 1 cut(s) 297
TfiI GAWTC 7 cut(s) 188, 378, 526, 561, 781, 879, 902
TscAI CASTG 4 cut(s) 16, 77, 507, 767
TseFI GTSAC 2 cut(s) 496, 758
TseI GCWGC 1 cut(s) 773
Tsp45I GTSAC 2 cut(s) 496, 758
TspDTI ATGAA 2 cut(s) 492, 654
TspGWI ACGGA 3 cut(s) 8, 390, 905
TspRI CASTG 4 cut(s) 16, 77, 507, 767
XagI CCTNNNNNAGG 1 cut(s) 477
XapI RAATTY 4 cut(s) 251, 450, 554, 644
XmnI GAANNNNTTC 1 cut(s) 377
XspI CTAG 1 cut(s) 566
ZrmI AGTACT 1 cut(s) 857
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.