Rroxscaffold_5G00365840

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0014199
Physical Location & Seq
Reverse (-)
47569586 .. 47571883
2298 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00365840.1

Sequence Viewer

Length: 936 bp
ATGACTACCACTGCTCTCCGTCTCTCCCTCCCTCCATCTCCTCAATCACTCGCTCCCGGCGCGTGTCCTCACCGCCAACCTCTCTCCCACTCCCACTCCCACCTCACCCTCCCAACCCTCCACAGCTCCACCCACACTCCACTCCTCCGCTCCTCCCATCACCGCCATCCATTTCCGGTCGCCATGTCCTCCGATTCCGGCCGATCAGTCTCTCCGGCGACTCAACCCCAACCGATCGAGCTCAACGACGAGTCCGAATTCGAAACCATCGTCTCGCCCGACGGTTACATCTCCATCTGCGGCTTCGGCTCTCTCCTCTCCGAGAGAAGCGCGAGGAGTACATTTCCGGAGCTGATCAACTTCAGAGTGGCGCGGTTGAACGGATTCCGGCGAGTCTTCGCTCACATGGCTCCGATTTTCTTCGAGCGTGGCATTGCCAAGCCTGAAACCAAGGAGATTTCGAGTTTGAGCGTGGAGCCTTATGAAGGCGAAAGCCTTATAGTGACAGTGTTTGAGATTGAAAAATCGGAGATTCCGGCTTTTATCAAGAGGGAGCCTGAATTTCGATTCCTAGCGGTTCTGCCTGAAAGCCTTGATGGGAAGCCATTTGATAATCGAGCGGTGCTTTGTGCTCGTTATAGTGATGAAGAATTTTTCAGAGTCAGATGCAAAGGAAGTAAGGAAATGTATTTTGAGCTATTTGGGCGATATAACATTGATAAGATTTGGAGGGATGATATCTTACCTTGCCGAACTTACCTTCGTCACTGTGTGTTAGCAGCAAAGAATCTCAACGATATAGCATACAACAACTTCTTGGATCACACTTTCCTTGGAGACCGTAAAACAACCATCCGCAAGTACTTGGCTACAACAGGTTCGGGAATCATGGAAGAAGAGCCTCCGGAATCCCTCAGGATCCGTTACGGTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

311

Amino Acids

35.25

Weight (kDa)

6.87

Isoelectric Point (pI)

60.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16060
fragaria_vesca FvH4_4g18820 FvH4_4g18820
malus_domestica MD16G1162300.v1.1
prunus_persica Prupe.1G129900_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0423631
rosa_laevigata RLG00000007540
rosa_multiflora Rmu_sc0000464.1_g000016 Rmu_sc0038723.1_g000001
rosa_roxburghii Rroxscaffold_5G00365840
rosa_rugosa Rorug04G0189200 Rorug04G0189200
rosa_samantha Rh4AG248800 Rh4BG254100 Rh4CG262100 Rh4DG249100
rosa_wichuraiana Rw4G021310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 150, 620
AccII CGCG 3 cut(s) 62, 332, 373
AccIII TCCGGA 2 cut(s) 346, 904
AciI CCGC 8 cut(s) 73, 148, 163, 300, 373, 575, 620, 856
AclWI GGATC 3 cut(s) 828, 913, 926
AcoI YGGCCR 1 cut(s) 199
AcsI RAATTY 3 cut(s) 257, 560, 650
AcuI CTGAAG 1 cut(s) 346
AdeI CACNNNGTG 1 cut(s) 772
AfaI GTAC 2 cut(s) 340, 863
AfiI CCNNNNNNNGG 1 cut(s) 485
AgsI TTSAA 2 cut(s) 379, 521
AluBI AGCT 4 cut(s) 126, 241, 352, 697
AluI AGCT 4 cut(s) 126, 241, 352, 697
Alw21I GWGCWC 2 cut(s) 243, 634
Alw26I GTCTC 4 cut(s) 26, 214, 277, 831
AlwI GGATC 3 cut(s) 828, 913, 926
Aor13HI TCCGGA 2 cut(s) 346, 904
AoxI GGCC 1 cut(s) 199
ApeKI GCWGC 1 cut(s) 779
ApoI RAATTY 3 cut(s) 257, 560, 650
ArsI GACNNNNNNTTYG 2 cut(s) 255, 287
Asp700I GAANNNNTTC 1 cut(s) 383
AspLEI GCGC 3 cut(s) 62, 332, 373
AsuC2I CCSGG 1 cut(s) 57
AsuHPI GGTGA 3 cut(s) 62, 97, 152
AsuII TTCGAA 1 cut(s) 261
AxyI CCTNAGG 1 cut(s) 914
BamHI GGATCC 1 cut(s) 918
BanII GRGCYC 1 cut(s) 243
BbsI GAAGAC 1 cut(s) 388
Bbv12I GWGCWC 2 cut(s) 243, 634
BbvI GCAGC 1 cut(s) 791
BccI CCATC 7 cut(s) 43, 165, 174, 275, 302, 590, 860
BclI TGATCA 1 cut(s) 354
BcnI CCSGG 1 cut(s) 57
BcoDI GTCTC 4 cut(s) 26, 214, 277, 831
BfaI CTAG 1 cut(s) 572
BisI GCNGC 2 cut(s) 301, 780
BlsI GCNGC 2 cut(s) 302, 781
BmcAI AGTACT 1 cut(s) 863
Bme1390I CCNGG 1 cut(s) 57
BmiI GGNNCC 4 cut(s) 411, 477, 555, 920
BmrFI CCNGG 1 cut(s) 57
BmsI GCATC 1 cut(s) 656
BpiI GAAGAC 1 cut(s) 388
Bpu14I TTCGAA 1 cut(s) 261
BpuMI CCSGG 1 cut(s) 57
BsaI GGTCTC 1 cut(s) 831
BsaJI CCNNGG 2 cut(s) 450, 832
BsaWI WCCGGW 3 cut(s) 175, 346, 904
BsaXI ACNNNNNCTCC 4 cut(s) 80, 110, 121, 151
Bsc4I CCNNNNNNNGG 1 cut(s) 485
Bse21I CCTNAGG 1 cut(s) 914
Bse3DI GCAATG 1 cut(s) 432
BseAI TCCGGA 2 cut(s) 346, 904
BseDI CCNNGG 2 cut(s) 450, 832
BseGI GGATG 3 cut(s) 166, 739, 852
BseLI CCNNNNNNNGG 1 cut(s) 485
BseMI GCAATG 1 cut(s) 432
BseMII CTCAG 1 cut(s) 928
BseRI GAGGAG 5 cut(s) 30, 134, 142, 305, 349
BseX3I CGGCCG 1 cut(s) 199
BseXI GCAGC 1 cut(s) 791
Bsh1236I CGCG 3 cut(s) 62, 332, 373
Bsh1285I CGRYCG 3 cut(s) 180, 202, 237
BshFI GGCC 1 cut(s) 201
BsiEI CGRYCG 3 cut(s) 180, 202, 237
BsiHKAI GWGCWC 2 cut(s) 243, 634
BsiSI CCGG 8 cut(s) 57, 176, 198, 215, 347, 388, 536, 905
BslI CCNNNNNNNGG 1 cut(s) 485
BsmAI GTCTC 4 cut(s) 26, 214, 277, 831
BsmBI CGTCTC 2 cut(s) 26, 277
BsnI GGCC 1 cut(s) 201
Bso31I GGTCTC 1 cut(s) 831
Bsp119I TTCGAA 1 cut(s) 261
Bsp1286I GDGCHC 2 cut(s) 243, 634
Bsp13I TCCGGA 2 cut(s) 346, 904
Bsp143I GATC 5 cut(s) 203, 234, 354, 820, 918
BspACI CCGC 8 cut(s) 73, 148, 163, 300, 373, 575, 620, 856
BspANI GGCC 1 cut(s) 201
BspCNI CTCAG 1 cut(s) 927
BspEI TCCGGA 2 cut(s) 346, 904
BspFNI CGCG 3 cut(s) 62, 332, 373
BspLI GGNNCC 4 cut(s) 411, 477, 555, 920
BspPI GGATC 3 cut(s) 828, 913, 926
BspQI GCTCTTC 1 cut(s) 891
BspT104I TTCGAA 1 cut(s) 261
BspTNI GGTCTC 1 cut(s) 831
BsrBI CCGCTC 2 cut(s) 150, 620
BsrDI GCAATG 1 cut(s) 432
BssECI CCNNGG 2 cut(s) 450, 832
BssMI GATC 5 cut(s) 203, 234, 354, 820, 918
BssT1I CCWWGG 2 cut(s) 450, 832
Bst4CI ACNGT 5 cut(s) 284, 508, 770, 842, 929
Bst6I CTCTTC 1 cut(s) 891
BstBI TTCGAA 1 cut(s) 261
BstDEI CTNAG 1 cut(s) 914
BstENI CCTNNNNNAGG 1 cut(s) 483
BstF5I GGATG 3 cut(s) 166, 739, 852
BstFNI CGCG 3 cut(s) 62, 332, 373
BstHHI GCGC 3 cut(s) 62, 332, 373
BstKTI GATC 5 cut(s) 206, 237, 357, 823, 921
BstMAI GTCTC 4 cut(s) 26, 214, 277, 831
BstMBI GATC 5 cut(s) 203, 234, 354, 820, 918
BstMCI CGRYCG 3 cut(s) 180, 202, 237
BstMWI GCNNNNNNNGC 4 cut(s) 59, 306, 407, 703
BstSCI CCNGG 1 cut(s) 55
BstUI CGCG 3 cut(s) 62, 332, 373
BstV1I GCAGC 1 cut(s) 791
BstV2I GAAGAC 1 cut(s) 388
BstX2I RGATCY 1 cut(s) 918
BstYI RGATCY 1 cut(s) 918
BstZI CGGCCG 1 cut(s) 199
Bsu36I CCTNAGG 1 cut(s) 914
BsuRI GGCC 1 cut(s) 201
BtsCI GGATG 3 cut(s) 166, 739, 852
BtsI GCAGTG 1 cut(s) 9
BtsIMutI CAGTG 3 cut(s) 9, 513, 766
CfoI GCGC 3 cut(s) 62, 332, 373
Csp6I GTAC 2 cut(s) 339, 862
CviAII CATG 3 cut(s) 184, 406, 889
CviQI GTAC 2 cut(s) 339, 862
DdeI CTNAG 1 cut(s) 914
DpnI GATC 5 cut(s) 205, 236, 356, 822, 920
DpnII GATC 5 cut(s) 203, 234, 354, 820, 918
DraIII CACNNNGTG 1 cut(s) 772
EaeI YGGCCR 1 cut(s) 199
EagI CGGCCG 1 cut(s) 199
Eam1104I CTCTTC 1 cut(s) 891
EarI CTCTTC 1 cut(s) 891
Ecl136II GAGCTC 1 cut(s) 241
EclXI CGGCCG 1 cut(s) 199
Eco130I CCWWGG 2 cut(s) 450, 832
Eco24I GRGCYC 1 cut(s) 243
Eco31I GGTCTC 1 cut(s) 831
Eco32I GATATC 1 cut(s) 739
Eco52I CGGCCG 1 cut(s) 199
Eco53kI GAGCTC 1 cut(s) 241
Eco57I CTGAAG 1 cut(s) 346
Eco81I CCTNAGG 1 cut(s) 914
EcoICRI GAGCTC 1 cut(s) 241
EcoNI CCTNNNNNAGG 1 cut(s) 483
EcoRI GAATTC 1 cut(s) 257
EcoRV GATATC 1 cut(s) 739
EcoT14I CCWWGG 2 cut(s) 450, 832
EcoT38I GRGCYC 1 cut(s) 243
ErhI CCWWGG 2 cut(s) 450, 832
Esp3I CGTCTC 2 cut(s) 26, 277
FaeI CATG 3 cut(s) 187, 409, 892
FaiI YATR 9 cut(s) 185, 407, 483, 500, 639, 711, 800, 805, 890
FatI CATG 3 cut(s) 183, 405, 888
FbaI TGATCA 1 cut(s) 354
Fnu4HI GCNGC 2 cut(s) 301, 780
FokI GGATG 3 cut(s) 153, 746, 839
FriOI GRGCYC 1 cut(s) 243
Fsp4HI GCNGC 2 cut(s) 301, 780
FspBI CTAG 1 cut(s) 572
GlaI GCGC 3 cut(s) 61, 331, 372
GluI GCNGC 2 cut(s) 301, 780
HaeIII GGCC 1 cut(s) 201
HapII CCGG 8 cut(s) 57, 176, 198, 215, 347, 388, 536, 905
HhaI GCGC 3 cut(s) 62, 332, 373
Hin1II CATG 3 cut(s) 187, 409, 892
Hin6I GCGC 3 cut(s) 60, 330, 371
HinP1I GCGC 3 cut(s) 60, 330, 371
HpaII CCGG 8 cut(s) 57, 176, 198, 215, 347, 388, 536, 905
HphI GGTGA 3 cut(s) 62, 97, 152
Hpy188I TCNGA 8 cut(s) 193, 256, 322, 365, 414, 529, 659, 665
Hpy188III TCNNGA 5 cut(s) 347, 547, 882, 905, 916
Hpy99I CGWCG 2 cut(s) 251, 284
HpyAV CCTTC 2 cut(s) 479, 770
HpyCH4III ACNGT 5 cut(s) 284, 508, 770, 842, 929
HpyCH4V TGCA 1 cut(s) 669
HpyF10VI GCNNNNNNNGC 4 cut(s) 59, 306, 407, 703
HpyF3I CTNAG 1 cut(s) 914
Hsp92II CATG 3 cut(s) 187, 409, 892
HspAI GCGC 3 cut(s) 60, 330, 371
Kpn2I TCCGGA 2 cut(s) 346, 904
Ksp22I TGATCA 1 cut(s) 354
Kzo9I GATC 5 cut(s) 203, 234, 354, 820, 918
LguI GCTCTTC 1 cut(s) 891
LmnI GCTCC 7 cut(s) 58, 131, 155, 349, 415, 475, 553
Lsp1109I GCAGC 1 cut(s) 791
LweI GCATC 1 cut(s) 656
MaeI CTAG 1 cut(s) 572
MaeIII GTNAC 4 cut(s) 284, 502, 764, 923
MalI GATC 5 cut(s) 205, 236, 356, 822, 920
MbiI CCGCTC 2 cut(s) 150, 620
MboI GATC 5 cut(s) 203, 234, 354, 820, 918
MboII GAAGA 5 cut(s) 388, 412, 659, 905, 908
MflI RGATCY 1 cut(s) 918
MhlI GDGCHC 2 cut(s) 243, 634
MluCI AATT 3 cut(s) 257, 560, 650
MlyI GAGTC 4 cut(s) 214, 260, 402, 669
MroI TCCGGA 2 cut(s) 346, 904
MroXI GAANNNNTTC 1 cut(s) 383
MseI TTAA 1 cut(s) 934
MspI CCGG 8 cut(s) 57, 176, 198, 215, 347, 388, 536, 905
MspR9I CCNGG 1 cut(s) 57
MvnI CGCG 3 cut(s) 62, 332, 373
MwoI GCNNNNNNNGC 4 cut(s) 59, 306, 407, 703
NciI CCSGG 1 cut(s) 57
NdeII GATC 5 cut(s) 203, 234, 354, 820, 918
NlaIII CATG 3 cut(s) 187, 409, 892
NlaIV GGNNCC 4 cut(s) 411, 477, 555, 920
NmuCI GTSAC 2 cut(s) 502, 764
NspV TTCGAA 1 cut(s) 261
PciSI GCTCTTC 1 cut(s) 891
PcsI WCGNNNNNNNCGW 4 cut(s) 243, 252, 267, 276
PdmI GAANNNNTTC 1 cut(s) 383
PfeI GAWTC 7 cut(s) 194, 384, 532, 567, 787, 885, 908
PkrI GCNGC 2 cut(s) 302, 781
Ple19I CGATCG 1 cut(s) 237
PleI GAGTC 4 cut(s) 214, 259, 401, 668
PpsI GAGTC 4 cut(s) 214, 259, 401, 668
Psp124BI GAGCTC 1 cut(s) 243
PspN4I GGNNCC 4 cut(s) 411, 477, 555, 920
PsuI RGATCY 1 cut(s) 918
PvuI CGATCG 1 cut(s) 237
RsaI GTAC 2 cut(s) 340, 863
RsaNI GTAC 2 cut(s) 339, 862
SacI GAGCTC 1 cut(s) 243
SapI GCTCTTC 1 cut(s) 891
SaqAI TTAA 1 cut(s) 934
SatI GCNGC 2 cut(s) 301, 780
Sau3AI GATC 5 cut(s) 203, 234, 354, 820, 918
ScaI AGTACT 1 cut(s) 863
SchI GAGTC 4 cut(s) 214, 260, 402, 669
ScrFI CCNGG 1 cut(s) 57
SduI GDGCHC 2 cut(s) 243, 634
SetI ASST 9 cut(s) 82, 105, 128, 243, 354, 699, 748, 762, 880
SfaNI GCATC 1 cut(s) 656
SfuI TTCGAA 1 cut(s) 261
Sse9I AATT 3 cut(s) 257, 560, 650
SsiI CCGC 8 cut(s) 73, 148, 163, 300, 373, 575, 620, 856
SspMI CTAG 1 cut(s) 572
SstI GAGCTC 1 cut(s) 243
StyD4I CCNGG 1 cut(s) 55
StyI CCWWGG 2 cut(s) 450, 832
TaaI ACNGT 5 cut(s) 284, 508, 770, 842, 929
TaqI TCGA 6 cut(s) 237, 261, 423, 461, 565, 616
TasI AATT 3 cut(s) 257, 560, 650
TatI WGTACW 2 cut(s) 338, 861
TauI GCSGC 1 cut(s) 303
TfiI GAWTC 7 cut(s) 194, 384, 532, 567, 787, 885, 908
Tru1I TTAA 1 cut(s) 934
Tru9I TTAA 1 cut(s) 934
TscAI CASTG 3 cut(s) 16, 513, 773
TseFI GTSAC 2 cut(s) 502, 764
TseI GCWGC 1 cut(s) 779
Tsp45I GTSAC 2 cut(s) 502, 764
TspDTI ATGAA 2 cut(s) 498, 660
TspGWI ACGGA 3 cut(s) 8, 396, 911
TspRI CASTG 3 cut(s) 16, 513, 773
XagI CCTNNNNNAGG 1 cut(s) 483
XapI RAATTY 3 cut(s) 257, 560, 650
XmnI GAANNNNTTC 1 cut(s) 383
XspI CTAG 1 cut(s) 572
ZrmI AGTACT 1 cut(s) 863
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.