Rh4AG248800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0014199
Physical Location & Seq
Reverse (-)
56152785 .. 56155851
3067 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG248800.1

Sequence Viewer

Length: 693 bp
ATGACTACCACTGCTCTCCGTCTCTCCCTCCCTCCATCTCCTCAATCACTCGCTCCCGGCGCGTGTCCTCACCGCCAACCTCTCTCCCACTCCCACTGCCACCTCACCTTCCCAACCCTCCACAGCTCCACCCACACTCCACTCCTCCGCTCCTCCCATCACCGCCATCCATCTCCGGTCGCCATGTCCTCCGATTCCGGCCGATCAGTCTCTCCGGCGACTCAACCCCAACCGATCGAGCTCAACGACGAGTCCGAATTCGAAACCATCGTCTCGCCCGACGGTTACATCTCCATCTGCGGCTTCGGCTCTCTCCTCTCCGAGAGAAGCGCGAGGAGTACATTTCCGGAGCTGATCAACTTCAGAGTGGCGCGGTTGAACGGATTCCGGCGAGTCTTCGCTCACATGGCTCCGATTTTCTTCGAGCGTGGCATTGCCAAGCCTGAGACCAAGGAGATTTCGAGTTTGAGTGTGGAGCCTTATGAAGGCGAAAGCCTTATAGTGACAGTGTTTGAGATTGAAAAATCGGAGATTCCGGCTTTTATCAAGAGGGAGCCTGAATTTCGATTCCTAGCGGTTCTGCCTGAAAGCCTTGATGGGAAGCCATTTGATAATCGAGCGGTGCTTTGTGCTCGTTATAGTGATGAAGAATTTTTCAGAGTCAGATGCAAAGGTAAATCATCCCTAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

230

Amino Acids

25.63

Weight (kDa)

6.8

Isoelectric Point (pI)

71.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16060
fragaria_vesca FvH4_4g18820 FvH4_4g18820
malus_domestica MD16G1162300.v1.1
prunus_persica Prupe.1G129900_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0423631
rosa_laevigata RLG00000007540
rosa_multiflora Rmu_sc0000464.1_g000016 Rmu_sc0038723.1_g000001
rosa_roxburghii Rroxscaffold_5G00365840
rosa_rugosa Rorug04G0189200 Rorug04G0189200
rosa_samantha Rh4AG248800 Rh4BG254100 Rh4CG262100 Rh4DG249100
rosa_wichuraiana Rw4G021310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 150, 620
AccII CGCG 3 cut(s) 62, 332, 373
AccIII TCCGGA 1 cut(s) 346
AciI CCGC 7 cut(s) 73, 148, 163, 300, 373, 575, 620
AcoI YGGCCR 1 cut(s) 199
AcsI RAATTY 3 cut(s) 257, 560, 650
AcuI CTGAAG 1 cut(s) 346
AfaI GTAC 1 cut(s) 340
AfiI CCNNNNNNNGG 1 cut(s) 485
AgsI TTSAA 2 cut(s) 379, 521
AluBI AGCT 3 cut(s) 126, 241, 352
AluI AGCT 3 cut(s) 126, 241, 352
Alw21I GWGCWC 2 cut(s) 243, 634
Alw26I GTCTC 4 cut(s) 26, 214, 277, 440
Aor13HI TCCGGA 1 cut(s) 346
AoxI GGCC 1 cut(s) 199
ApoI RAATTY 3 cut(s) 257, 560, 650
ArsI GACNNNNNNTTYG 2 cut(s) 255, 287
Asp700I GAANNNNTTC 1 cut(s) 383
AspLEI GCGC 3 cut(s) 62, 332, 373
AsuC2I CCSGG 1 cut(s) 57
AsuHPI GGTGA 3 cut(s) 62, 97, 152
AsuII TTCGAA 1 cut(s) 261
BanII GRGCYC 1 cut(s) 243
BbsI GAAGAC 1 cut(s) 388
Bbv12I GWGCWC 2 cut(s) 243, 634
BccI CCATC 7 cut(s) 43, 165, 174, 178, 275, 302, 590
BclI TGATCA 1 cut(s) 354
BcnI CCSGG 1 cut(s) 57
BcoDI GTCTC 4 cut(s) 26, 214, 277, 440
BfaI CTAG 2 cut(s) 572, 686
BisI GCNGC 1 cut(s) 301
BlsI GCNGC 1 cut(s) 302
Bme1390I CCNGG 1 cut(s) 57
BmiI GGNNCC 3 cut(s) 411, 477, 555
BmrFI CCNGG 1 cut(s) 57
BmsI GCATC 1 cut(s) 656
BpiI GAAGAC 1 cut(s) 388
Bpu14I TTCGAA 1 cut(s) 261
BpuMI CCSGG 1 cut(s) 57
BsaI GGTCTC 1 cut(s) 440
BsaJI CCNNGG 1 cut(s) 450
BsaWI WCCGGW 2 cut(s) 175, 346
BsaXI ACNNNNNCTCC 2 cut(s) 121, 151
Bsc4I CCNNNNNNNGG 1 cut(s) 485
Bse3DI GCAATG 1 cut(s) 432
BseAI TCCGGA 1 cut(s) 346
BseDI CCNNGG 1 cut(s) 450
BseGI GGATG 2 cut(s) 166, 680
BseLI CCNNNNNNNGG 1 cut(s) 485
BseMI GCAATG 1 cut(s) 432
BseMII CTCAG 1 cut(s) 435
BseRI GAGGAG 5 cut(s) 30, 134, 142, 305, 349
BseX3I CGGCCG 1 cut(s) 199
Bsh1236I CGCG 3 cut(s) 62, 332, 373
Bsh1285I CGRYCG 3 cut(s) 180, 202, 237
BshFI GGCC 1 cut(s) 201
BsiEI CGRYCG 3 cut(s) 180, 202, 237
BsiHKAI GWGCWC 2 cut(s) 243, 634
BsiSI CCGG 7 cut(s) 57, 176, 198, 215, 347, 388, 536
BslI CCNNNNNNNGG 1 cut(s) 485
BsmAI GTCTC 4 cut(s) 26, 214, 277, 440
BsmBI CGTCTC 2 cut(s) 26, 277
BsnI GGCC 1 cut(s) 201
Bso31I GGTCTC 1 cut(s) 440
Bsp119I TTCGAA 1 cut(s) 261
Bsp1286I GDGCHC 2 cut(s) 243, 634
Bsp13I TCCGGA 1 cut(s) 346
Bsp143I GATC 3 cut(s) 203, 234, 354
BspACI CCGC 7 cut(s) 73, 148, 163, 300, 373, 575, 620
BspANI GGCC 1 cut(s) 201
BspCNI CTCAG 1 cut(s) 436
BspEI TCCGGA 1 cut(s) 346
BspFNI CGCG 3 cut(s) 62, 332, 373
BspLI GGNNCC 3 cut(s) 411, 477, 555
BspT104I TTCGAA 1 cut(s) 261
BspTNI GGTCTC 1 cut(s) 440
BsrBI CCGCTC 2 cut(s) 150, 620
BsrDI GCAATG 1 cut(s) 432
BssECI CCNNGG 1 cut(s) 450
BssMI GATC 3 cut(s) 203, 234, 354
BssT1I CCWWGG 1 cut(s) 450
Bst4CI ACNGT 2 cut(s) 284, 508
BstBI TTCGAA 1 cut(s) 261
BstDEI CTNAG 1 cut(s) 444
BstENI CCTNNNNNAGG 1 cut(s) 483
BstF5I GGATG 2 cut(s) 166, 680
BstFNI CGCG 3 cut(s) 62, 332, 373
BstHHI GCGC 3 cut(s) 62, 332, 373
BstKTI GATC 3 cut(s) 206, 237, 357
BstMAI GTCTC 4 cut(s) 26, 214, 277, 440
BstMBI GATC 3 cut(s) 203, 234, 354
BstMCI CGRYCG 3 cut(s) 180, 202, 237
BstMWI GCNNNNNNNGC 3 cut(s) 59, 306, 407
BstSCI CCNGG 1 cut(s) 55
BstUI CGCG 3 cut(s) 62, 332, 373
BstV2I GAAGAC 1 cut(s) 388
BstZI CGGCCG 1 cut(s) 199
BsuRI GGCC 1 cut(s) 201
BtsCI GGATG 2 cut(s) 166, 680
BtsI GCAGTG 2 cut(s) 9, 94
BtsIMutI CAGTG 3 cut(s) 9, 94, 513
CfoI GCGC 3 cut(s) 62, 332, 373
Csp6I GTAC 1 cut(s) 339
CviAII CATG 2 cut(s) 184, 406
CviQI GTAC 1 cut(s) 339
DdeI CTNAG 1 cut(s) 444
DpnI GATC 3 cut(s) 205, 236, 356
DpnII GATC 3 cut(s) 203, 234, 354
EaeI YGGCCR 1 cut(s) 199
EagI CGGCCG 1 cut(s) 199
Ecl136II GAGCTC 1 cut(s) 241
EclXI CGGCCG 1 cut(s) 199
Eco130I CCWWGG 1 cut(s) 450
Eco24I GRGCYC 1 cut(s) 243
Eco31I GGTCTC 1 cut(s) 440
Eco52I CGGCCG 1 cut(s) 199
Eco53kI GAGCTC 1 cut(s) 241
Eco57I CTGAAG 1 cut(s) 346
EcoICRI GAGCTC 1 cut(s) 241
EcoNI CCTNNNNNAGG 1 cut(s) 483
EcoRI GAATTC 1 cut(s) 257
EcoT14I CCWWGG 1 cut(s) 450
EcoT38I GRGCYC 1 cut(s) 243
ErhI CCWWGG 1 cut(s) 450
Esp3I CGTCTC 2 cut(s) 26, 277
FaeI CATG 2 cut(s) 187, 409
FaiI YATR 5 cut(s) 185, 407, 483, 500, 639
FatI CATG 2 cut(s) 183, 405
FbaI TGATCA 1 cut(s) 354
Fnu4HI GCNGC 1 cut(s) 301
FokI GGATG 2 cut(s) 153, 667
FriOI GRGCYC 1 cut(s) 243
Fsp4HI GCNGC 1 cut(s) 301
FspBI CTAG 2 cut(s) 572, 686
GlaI GCGC 3 cut(s) 61, 331, 372
GluI GCNGC 1 cut(s) 301
HaeIII GGCC 1 cut(s) 201
HapII CCGG 7 cut(s) 57, 176, 198, 215, 347, 388, 536
HhaI GCGC 3 cut(s) 62, 332, 373
Hin1II CATG 2 cut(s) 187, 409
Hin6I GCGC 3 cut(s) 60, 330, 371
HinP1I GCGC 3 cut(s) 60, 330, 371
HinfI GANTC 8 cut(s) 194, 220, 251, 384, 393, 532, 567, 660
HpaII CCGG 7 cut(s) 57, 176, 198, 215, 347, 388, 536
HphI GGTGA 3 cut(s) 62, 97, 152
Hpy188I TCNGA 8 cut(s) 193, 256, 322, 365, 414, 529, 659, 665
Hpy188III TCNNGA 2 cut(s) 347, 547
Hpy99I CGWCG 2 cut(s) 251, 284
HpyAV CCTTC 2 cut(s) 118, 479
HpyCH4III ACNGT 2 cut(s) 284, 508
HpyCH4V TGCA 1 cut(s) 669
HpyF10VI GCNNNNNNNGC 3 cut(s) 59, 306, 407
HpyF3I CTNAG 1 cut(s) 444
Hsp92II CATG 2 cut(s) 187, 409
HspAI GCGC 3 cut(s) 60, 330, 371
Kpn2I TCCGGA 1 cut(s) 346
Ksp22I TGATCA 1 cut(s) 354
Kzo9I GATC 3 cut(s) 203, 234, 354
LmnI GCTCC 7 cut(s) 58, 131, 155, 349, 415, 475, 553
LweI GCATC 1 cut(s) 656
MaeI CTAG 2 cut(s) 572, 686
MaeIII GTNAC 2 cut(s) 284, 502
MalI GATC 3 cut(s) 205, 236, 356
MbiI CCGCTC 2 cut(s) 150, 620
MboI GATC 3 cut(s) 203, 234, 354
MboII GAAGA 3 cut(s) 388, 412, 659
MhlI GDGCHC 2 cut(s) 243, 634
MluCI AATT 3 cut(s) 257, 560, 650
MlyI GAGTC 4 cut(s) 214, 260, 402, 669
MroI TCCGGA 1 cut(s) 346
MroXI GAANNNNTTC 1 cut(s) 383
MspI CCGG 7 cut(s) 57, 176, 198, 215, 347, 388, 536
MspR9I CCNGG 1 cut(s) 57
MvnI CGCG 3 cut(s) 62, 332, 373
MwoI GCNNNNNNNGC 3 cut(s) 59, 306, 407
NciI CCSGG 1 cut(s) 57
NdeII GATC 3 cut(s) 203, 234, 354
NlaIII CATG 2 cut(s) 187, 409
NlaIV GGNNCC 3 cut(s) 411, 477, 555
NmuCI GTSAC 1 cut(s) 502
NspV TTCGAA 1 cut(s) 261
PcsI WCGNNNNNNNCGW 4 cut(s) 243, 252, 267, 276
PdmI GAANNNNTTC 1 cut(s) 383
PfeI GAWTC 4 cut(s) 194, 384, 532, 567
PkrI GCNGC 1 cut(s) 302
Ple19I CGATCG 1 cut(s) 237
PleI GAGTC 4 cut(s) 214, 259, 401, 668
PpsI GAGTC 4 cut(s) 214, 259, 401, 668
Psp124BI GAGCTC 1 cut(s) 243
PspN4I GGNNCC 3 cut(s) 411, 477, 555
PvuI CGATCG 1 cut(s) 237
RsaI GTAC 1 cut(s) 340
RsaNI GTAC 1 cut(s) 339
SacI GAGCTC 1 cut(s) 243
SatI GCNGC 1 cut(s) 301
Sau3AI GATC 3 cut(s) 203, 234, 354
SchI GAGTC 4 cut(s) 214, 260, 402, 669
ScrFI CCNGG 1 cut(s) 57
SduI GDGCHC 2 cut(s) 243, 634
SetI ASST 7 cut(s) 82, 105, 110, 128, 243, 354, 676
SfaNI GCATC 1 cut(s) 656
SfuI TTCGAA 1 cut(s) 261
Sse9I AATT 3 cut(s) 257, 560, 650
SsiI CCGC 7 cut(s) 73, 148, 163, 300, 373, 575, 620
SspMI CTAG 2 cut(s) 572, 686
SstI GAGCTC 1 cut(s) 243
StyD4I CCNGG 1 cut(s) 55
StyI CCWWGG 1 cut(s) 450
TaaI ACNGT 2 cut(s) 284, 508
TaqI TCGA 6 cut(s) 237, 261, 423, 461, 565, 616
TasI AATT 3 cut(s) 257, 560, 650
TatI WGTACW 1 cut(s) 338
TauI GCSGC 1 cut(s) 303
TfiI GAWTC 4 cut(s) 194, 384, 532, 567
TscAI CASTG 3 cut(s) 16, 101, 513
TseFI GTSAC 1 cut(s) 502
Tsp45I GTSAC 1 cut(s) 502
TspDTI ATGAA 2 cut(s) 498, 660
TspGWI ACGGA 2 cut(s) 8, 396
TspRI CASTG 3 cut(s) 16, 101, 513
XagI CCTNNNNNAGG 1 cut(s) 483
XapI RAATTY 3 cut(s) 257, 560, 650
XmnI GAANNNNTTC 1 cut(s) 383
XspI CTAG 2 cut(s) 572, 686
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.