Prupe.1G129900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0014199
Physical Location & Seq
Forward (+)
10110103 .. 10113145
3043 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G129900.1

Sequence Viewer

Length: 936 bp
ATGACAACCACTGCTCTCCGTCTCTCGTTCCATCCATCTCCTCACTCACTCTCGCGCGGCGCGTGCCCTCTACGCCAACCTCTCTCCAACTCCCTCCTCACCTTCCCAACCCCAAACCCAACCCTGCACAGCTCAACGCTCATTCCATTCCACCGGTCCCATCGCCGGCGACAGTCTCCGATCACTATGTCAGACTCCGGCCGATCAAGCTCTCCAGCGGCCCAGCCGCCACCGATGGAACTCAACGAGGAGTCGGATTTCGAAACCATTCTCTCACCCGACGGTTACATCTCTATCTGTGGCTTCGGTTCCCTCCTCTCCGAGAGAAGCGCGAGGAGTACATTTCCGGACCTGATCAACTTCAGAGTTGCGCGGTTGAACGGCTTTCGTCGAGCGTATGCTCACATGGCTCCCATTTTCTTCGAGCGTGGCATTGCCAAGCCTGAAACCAAGGAGATTGCAAGCTTGAGTGTAGAGCCTTGTGAAGGTGAAAGCCTTATAGTAACAGTGTTTGAGATTACAAAATCAGAGATTCCAGCTTTTATCAAGAGGGAACCTGAATTTCGATTCCTAGCTGTTCTGCCTGAAACACTTGATGGAAAGCCATTTGATAATCGAGCGGTACTTTGTGCTCGTTATAGTGATGAAGAGTTCTTCAGAGTTAGATGCAAAGGAAGTAAGGAGATGTATTTTCAGCTATTTGGACGATATGGAATTGATAAGATCTGGCGAGATGATATCCTACCTTGTCGCACTTACCTTCGGCATTGTGTCTTAGCAGCAAAGAATCTGAGCGAGGTAGCATACAACAACTTCTTGGATCACACTTTCCTTGGAGACCGTAAAACGACCATCCGCTTGTACCTTGCTACAACAGGTTCAGGCATCATGGAAGAAGAGCCTCCAGAGTCCCTCAAGACCCGGTATGGTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

312

Amino Acids

35.18

Weight (kDa)

8.44

Isoelectric Point (pI)

57.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16060
fragaria_vesca FvH4_4g18820 FvH4_4g18820
malus_domestica MD16G1162300.v1.1
prunus_persica Prupe.1G129900_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0423631
rosa_laevigata RLG00000007540
rosa_multiflora Rmu_sc0000464.1_g000016 Rmu_sc0038723.1_g000001
rosa_roxburghii Rroxscaffold_5G00365840
rosa_rugosa Rorug04G0189200 Rorug04G0189200
rosa_samantha Rh4AG248800 Rh4BG254100 Rh4CG262100 Rh4DG249100
rosa_wichuraiana Rw4G021310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 620
AccII CGCG 5 cut(s) 55, 57, 62, 332, 373
AccIII TCCGGA 1 cut(s) 346
AciI CCGC 6 cut(s) 57, 218, 227, 373, 620, 856
AclWI GGATC 1 cut(s) 828
AcoI YGGCCR 1 cut(s) 199
AcsI RAATTY 1 cut(s) 560
AcuI CTGAAG 2 cut(s) 346, 640
AfaI GTAC 3 cut(s) 340, 624, 863
AfiI CCNNNNNNNGG 2 cut(s) 165, 485
AgeI ACCGGT 1 cut(s) 153
AgsI TTSAA 1 cut(s) 379
AluBI AGCT 6 cut(s) 132, 210, 465, 539, 575, 697
AluI AGCT 6 cut(s) 132, 210, 465, 539, 575, 697
Alw21I GWGCWC 1 cut(s) 634
Alw26I GTCTC 3 cut(s) 26, 180, 831
AlwI GGATC 1 cut(s) 828
Aor13HI TCCGGA 1 cut(s) 346
AoxI GGCC 2 cut(s) 199, 219
ApeKI GCWGC 1 cut(s) 779
ApoI RAATTY 1 cut(s) 560
AsiGI ACCGGT 1 cut(s) 153
Asp700I GAANNNNTTC 1 cut(s) 267
AspLEI GCGC 4 cut(s) 57, 62, 332, 373
AspS9I GGNCC 3 cut(s) 156, 220, 349
AsuC2I CCSGG 1 cut(s) 922
AsuHPI GGTGA 3 cut(s) 91, 267, 500
AsuII TTCGAA 1 cut(s) 261
AvaII GGWCC 2 cut(s) 156, 349
BaeGI GKGCMC 1 cut(s) 68
Bbv12I GWGCWC 1 cut(s) 634
BbvI GCAGC 1 cut(s) 791
BccI CCATC 6 cut(s) 39, 43, 168, 229, 590, 860
BceAI ACGGC 1 cut(s) 397
BclI TGATCA 1 cut(s) 354
BcnI CCSGG 1 cut(s) 922
BcoDI GTCTC 3 cut(s) 26, 180, 831
BfaI CTAG 1 cut(s) 572
BglII AGATCT 1 cut(s) 723
BisI GCNGC 4 cut(s) 58, 219, 227, 780
BlsI GCNGC 4 cut(s) 59, 220, 228, 781
Bme1390I CCNGG 1 cut(s) 922
Bme18I GGWCC 2 cut(s) 156, 349
BmgT120I GGNCC 3 cut(s) 156, 220, 349
BmiI GGNNCC 4 cut(s) 158, 310, 411, 555
BmrFI CCNGG 1 cut(s) 922
BmsI GCATC 2 cut(s) 656, 894
BpmI CTGGAG 2 cut(s) 198, 888
Bpu14I TTCGAA 1 cut(s) 261
BpuEI CTTGAG 2 cut(s) 487, 899
BpuMI CCSGG 1 cut(s) 922
BsaI GGTCTC 1 cut(s) 831
BsaJI CCNNGG 2 cut(s) 450, 832
BsaWI WCCGGW 2 cut(s) 153, 346
Bsc4I CCNNNNNNNGG 2 cut(s) 165, 485
Bse118I RCCGGY 2 cut(s) 153, 165
Bse3DI GCAATG 1 cut(s) 432
BseAI TCCGGA 1 cut(s) 346
BseDI CCNNGG 2 cut(s) 450, 832
BseGI GGATG 2 cut(s) 31, 852
BseLI CCNNNNNNNGG 2 cut(s) 165, 485
BseMI GCAATG 1 cut(s) 432
BseMII CTCAG 1 cut(s) 782
BseRI GAGGAG 5 cut(s) 30, 86, 263, 305, 349
BseSI GKGCMC 1 cut(s) 68
BseX3I CGGCCG 1 cut(s) 199
BseXI GCAGC 1 cut(s) 791
BseYI CCCAGC 1 cut(s) 222
BsgI GTGCAG 1 cut(s) 110
Bsh1236I CGCG 5 cut(s) 55, 57, 62, 332, 373
Bsh1285I CGRYCG 1 cut(s) 202
BshFI GGCC 2 cut(s) 201, 221
BshTI ACCGGT 1 cut(s) 153
BsiEI CGRYCG 1 cut(s) 202
BsiHKAI GWGCWC 1 cut(s) 634
BsiSI CCGG 5 cut(s) 154, 166, 198, 347, 922
BslFI GGGAC 2 cut(s) 142, 895
BslI CCNNNNNNNGG 2 cut(s) 165, 485
BsmAI GTCTC 3 cut(s) 26, 180, 831
BsmBI CGTCTC 1 cut(s) 26
BsmFI GGGAC 2 cut(s) 142, 895
BsnI GGCC 2 cut(s) 201, 221
Bso31I GGTCTC 1 cut(s) 831
Bsp119I TTCGAA 1 cut(s) 261
Bsp1286I GDGCHC 2 cut(s) 68, 634
Bsp13I TCCGGA 1 cut(s) 346
Bsp143I GATC 5 cut(s) 180, 203, 354, 723, 820
BspACI CCGC 6 cut(s) 57, 218, 227, 373, 620, 856
BspANI GGCC 2 cut(s) 201, 221
BspCNI CTCAG 1 cut(s) 783
BspEI TCCGGA 1 cut(s) 346
BspFNI CGCG 5 cut(s) 55, 57, 62, 332, 373
BspLI GGNNCC 4 cut(s) 158, 310, 411, 555
BspPI GGATC 1 cut(s) 828
BspQI GCTCTTC 1 cut(s) 891
BspT104I TTCGAA 1 cut(s) 261
BspTNI GGTCTC 1 cut(s) 831
BsrBI CCGCTC 1 cut(s) 620
BsrDI GCAATG 1 cut(s) 432
BsrFI RCCGGY 2 cut(s) 153, 165
BssAI RCCGGY 2 cut(s) 153, 165
BssECI CCNNGG 2 cut(s) 450, 832
BssMI GATC 5 cut(s) 180, 203, 354, 723, 820
BssT1I CCWWGG 2 cut(s) 450, 832
Bst4CI ACNGT 4 cut(s) 174, 284, 508, 842
Bst6I CTCTTC 2 cut(s) 642, 891
BstBI TTCGAA 1 cut(s) 261
BstC8I GCNNGC 3 cut(s) 64, 167, 463
BstDEI CTNAG 2 cut(s) 775, 791
BstENI CCTNNNNNAGG 1 cut(s) 483
BstF5I GGATG 2 cut(s) 31, 852
BstFNI CGCG 5 cut(s) 55, 57, 62, 332, 373
BstHHI GCGC 4 cut(s) 57, 62, 332, 373
BstKTI GATC 5 cut(s) 183, 206, 357, 726, 823
BstMAI GTCTC 3 cut(s) 26, 180, 831
BstMBI GATC 5 cut(s) 180, 203, 354, 723, 820
BstMCI CGRYCG 1 cut(s) 202
BstMWI GCNNNNNNNGC 4 cut(s) 63, 72, 207, 407
BstSCI CCNGG 1 cut(s) 920
BstSLI GKGCMC 1 cut(s) 68
BstUI CGCG 5 cut(s) 55, 57, 62, 332, 373
BstV1I GCAGC 1 cut(s) 791
BstX2I RGATCY 1 cut(s) 723
BstYI RGATCY 1 cut(s) 723
BstZI CGGCCG 1 cut(s) 199
BsuRI GGCC 2 cut(s) 201, 221
BtgZI GCGATG 1 cut(s) 146
BtsCI GGATG 2 cut(s) 31, 852
BtsI GCAGTG 1 cut(s) 9
BtsIMutI CAGTG 2 cut(s) 9, 513
Cac8I GCNNGC 3 cut(s) 64, 167, 463
CfoI GCGC 4 cut(s) 57, 62, 332, 373
Cfr10I RCCGGY 2 cut(s) 153, 165
Cfr13I GGNCC 3 cut(s) 156, 220, 349
Csp6I GTAC 3 cut(s) 339, 623, 862
CspAI ACCGGT 1 cut(s) 153
CviAII CATG 2 cut(s) 406, 889
CviQI GTAC 3 cut(s) 339, 623, 862
DdeI CTNAG 2 cut(s) 775, 791
DpnI GATC 5 cut(s) 182, 205, 356, 725, 822
DpnII GATC 5 cut(s) 180, 203, 354, 723, 820
EaeI YGGCCR 1 cut(s) 199
EagI CGGCCG 1 cut(s) 199
Eam1104I CTCTTC 2 cut(s) 642, 891
EarI CTCTTC 2 cut(s) 642, 891
EclXI CGGCCG 1 cut(s) 199
Eco130I CCWWGG 2 cut(s) 450, 832
Eco31I GGTCTC 1 cut(s) 831
Eco32I GATATC 1 cut(s) 739
Eco47I GGWCC 2 cut(s) 156, 349
Eco52I CGGCCG 1 cut(s) 199
Eco57I CTGAAG 2 cut(s) 346, 640
EcoNI CCTNNNNNAGG 1 cut(s) 483
EcoRV GATATC 1 cut(s) 739
EcoT14I CCWWGG 2 cut(s) 450, 832
ErhI CCWWGG 2 cut(s) 450, 832
Esp3I CGTCTC 1 cut(s) 26
FaeI CATG 2 cut(s) 409, 892
FaiI YATR 9 cut(s) 188, 399, 407, 500, 639, 711, 805, 890, 927
FaqI GGGAC 2 cut(s) 142, 895
FatI CATG 2 cut(s) 405, 888
FbaI TGATCA 1 cut(s) 354
Fnu4HI GCNGC 4 cut(s) 58, 219, 227, 780
FokI GGATG 2 cut(s) 18, 839
Fsp4HI GCNGC 4 cut(s) 58, 219, 227, 780
FspBI CTAG 1 cut(s) 572
GlaI GCGC 4 cut(s) 56, 61, 331, 372
GluI GCNGC 4 cut(s) 58, 219, 227, 780
GsaI CCCAGC 1 cut(s) 226
GsuI CTGGAG 2 cut(s) 198, 888
HaeIII GGCC 2 cut(s) 201, 221
HapII CCGG 5 cut(s) 154, 166, 198, 347, 922
HhaI GCGC 4 cut(s) 57, 62, 332, 373
Hin1II CATG 2 cut(s) 409, 892
Hin6I GCGC 4 cut(s) 55, 60, 330, 371
HinP1I GCGC 4 cut(s) 55, 60, 330, 371
HindIII AAGCTT 1 cut(s) 463
HinfI GANTC 6 cut(s) 194, 251, 532, 567, 787, 908
HpaII CCGG 5 cut(s) 154, 166, 198, 347, 922
HphI GGTGA 3 cut(s) 91, 267, 500
Hpy188I TCNGA 8 cut(s) 180, 193, 256, 322, 365, 529, 659, 792
Hpy188III TCNNGA 4 cut(s) 347, 547, 905, 916
Hpy99I CGWCG 2 cut(s) 284, 393
HpyAV CCTTC 3 cut(s) 112, 479, 770
HpyCH4III ACNGT 4 cut(s) 174, 284, 508, 842
HpyCH4V TGCA 3 cut(s) 127, 461, 669
HpyF10VI GCNNNNNNNGC 4 cut(s) 63, 72, 207, 407
HpyF3I CTNAG 2 cut(s) 775, 791
Hsp92II CATG 2 cut(s) 409, 892
HspAI GCGC 4 cut(s) 55, 60, 330, 371
Kpn2I TCCGGA 1 cut(s) 346
KroI GCCGGC 1 cut(s) 165
KroNI GCCGGC 1 cut(s) 167
Ksp22I TGATCA 1 cut(s) 354
Kzo9I GATC 5 cut(s) 180, 203, 354, 723, 820
LguI GCTCTTC 1 cut(s) 891
LmnI GCTCC 1 cut(s) 415
Lsp1109I GCAGC 1 cut(s) 791
LweI GCATC 2 cut(s) 656, 894
MaeI CTAG 1 cut(s) 572
MaeIII GTNAC 2 cut(s) 284, 502
MalI GATC 5 cut(s) 182, 205, 356, 725, 822
MbiI CCGCTC 1 cut(s) 620
MboI GATC 5 cut(s) 180, 203, 354, 723, 820
MboII GAAGA 5 cut(s) 412, 646, 659, 905, 908
MflI RGATCY 1 cut(s) 723
MhlI GDGCHC 2 cut(s) 68, 634
MluCI AATT 2 cut(s) 560, 714
MlyI GAGTC 3 cut(s) 188, 260, 917
MmeI TCCRAC 2 cut(s) 111, 234
MreI CGCCGGCG 1 cut(s) 165
MroI TCCGGA 1 cut(s) 346
MroNI GCCGGC 1 cut(s) 165
MroXI GAANNNNTTC 1 cut(s) 267
MseI TTAA 1 cut(s) 934
MspA1I CMGCKG 1 cut(s) 218
MspI CCGG 5 cut(s) 154, 166, 198, 347, 922
MspR9I CCNGG 1 cut(s) 922
MteI GCGCNGCGC 1 cut(s) 58
MvnI CGCG 5 cut(s) 55, 57, 62, 332, 373
MwoI GCNNNNNNNGC 4 cut(s) 63, 72, 207, 407
NaeI GCCGGC 1 cut(s) 167
NciI CCSGG 1 cut(s) 922
NdeII GATC 5 cut(s) 180, 203, 354, 723, 820
NgoMIV GCCGGC 1 cut(s) 165
NlaIII CATG 2 cut(s) 409, 892
NlaIV GGNNCC 4 cut(s) 158, 310, 411, 555
NspV TTCGAA 1 cut(s) 261
PciSI GCTCTTC 1 cut(s) 891
PcsI WCGNNNNNNNCGW 1 cut(s) 59
PdiI GCCGGC 1 cut(s) 167
PdmI GAANNNNTTC 1 cut(s) 267
PfeI GAWTC 3 cut(s) 532, 567, 787
PinAI ACCGGT 1 cut(s) 153
PkrI GCNGC 4 cut(s) 59, 220, 228, 781
PleI GAGTC 3 cut(s) 188, 259, 916
PpsI GAGTC 3 cut(s) 188, 259, 916
PspFI CCCAGC 1 cut(s) 222
PspN4I GGNNCC 4 cut(s) 158, 310, 411, 555
PspPI GGNCC 3 cut(s) 156, 220, 349
PsuI RGATCY 1 cut(s) 723
RsaI GTAC 3 cut(s) 340, 624, 863
RsaNI GTAC 3 cut(s) 339, 623, 862
SapI GCTCTTC 1 cut(s) 891
SaqAI TTAA 1 cut(s) 934
SatI GCNGC 4 cut(s) 58, 219, 227, 780
Sau3AI GATC 5 cut(s) 180, 203, 354, 723, 820
Sau96I GGNCC 3 cut(s) 156, 220, 349
SchI GAGTC 3 cut(s) 188, 260, 917
ScrFI CCNGG 1 cut(s) 922
SduI GDGCHC 2 cut(s) 68, 634
SfaNI GCATC 2 cut(s) 656, 894
SfuI TTCGAA 1 cut(s) 261
SgrAI CRCCGGYG 1 cut(s) 165
SinI GGWCC 2 cut(s) 156, 349
SmlI CTYRAG 2 cut(s) 466, 914
SmoI CTYRAG 2 cut(s) 466, 914
Sse9I AATT 2 cut(s) 560, 714
SsiI CCGC 6 cut(s) 57, 218, 227, 373, 620, 856
SspMI CTAG 1 cut(s) 572
StyD4I CCNGG 1 cut(s) 920
StyI CCWWGG 2 cut(s) 450, 832
TaaI ACNGT 4 cut(s) 174, 284, 508, 842
TaqI TCGA 5 cut(s) 261, 391, 423, 565, 616
TasI AATT 2 cut(s) 560, 714
TatI WGTACW 1 cut(s) 338
TauI GCSGC 3 cut(s) 60, 221, 229
TfiI GAWTC 3 cut(s) 532, 567, 787
Tru1I TTAA 1 cut(s) 934
Tru9I TTAA 1 cut(s) 934
TscAI CASTG 2 cut(s) 16, 513
TseI GCWGC 1 cut(s) 779
TspDTI ATGAA 1 cut(s) 660
TspGWI ACGGA 1 cut(s) 8
TspRI CASTG 2 cut(s) 16, 513
VpaK11BI GGWCC 2 cut(s) 156, 349
XagI CCTNNNNNAGG 1 cut(s) 483
XapI RAATTY 1 cut(s) 560
XmnI GAANNNNTTC 1 cut(s) 267
XspI CTAG 1 cut(s) 572
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.