AT4G16180

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0014038
Physical Location & Seq
Reverse (-)
9165201 .. 9171064
5864 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G16180.1

Sequence Viewer

Length: 822 bp
ATGGAGTTGAGATCGGATTCACGATCGAGTTCGTTTTCTTCTCTCCTATTCGTCGCGTTTCTCTTGTTTCTATGCGGACTCGTTTCTCGTACCGACTCGGCTCAGCAACCTTTCCGTCGCGAGCCAGGTCATCCTCACTGGCATCACAGTGCTTTCCTTGACGTACGAGAGAGTGTTCGATCCGATGTCCGCCGTATGCTTCACTCCCGTGCCGAGGTACCATTTCAGGTTCCTTTGGAAGTGAATATAGTGCTTGTGGGTTTGAATGGAGATGGAGGTTACAGGTATTCAGTGGATCCTCAAAAACTAGAAGAGTTCCTAAGAGCCAGTTTTTCAACACATAGGCCTTCATGCCAAGAGACGGGCGAGCCACTTGATATTGAGCATCGAGTTGTTTATAATATCTTTCCTAGTGGGCAACCTGAATTAATAGCTCTGGAGAAGGCAGTGAAAGAAGCCATGGTGCCTGCTGGAACTGCACTAGAGGCTGATTTTGGAAGACACTTACCTGCCTATGACGTAGAGGCAATAAAAGTGGAGTCCGCATTTAACCAGCTTTACTCGTATATATTTGATATTGATGTGGGTTCTGGATCAGCCGCAACGGCAGATAAACCTATACCAAGTGCCATATTTGTAGTGAATTTTGATAAGGTAAGAATGGATCCTAAAAATACAGAGATTGATCTAGACAGCTTGATGTTTGCAAAGCTACCAGAGCTTAGTGATGCAGACAAGGAGAAACAAGAGGCAGATTATATTTATCGATATAGATACAATGGTGGAGGAGCATCCCAAGTTTGGCTTGCATCAGGCAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

273

Amino Acids

30.62

Weight (kDa)

5.31

Isoelectric Point (pI)

46.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7906 PF25483 77 - 273 2.8e-27 Domain of unknown function (DUF7906)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014038)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16180
fragaria_vesca FvH4_4g19930 FvH4_4g19930
malus_domestica MD16G1152500.v1.1
prunus_persica Prupe.1G115700_v2.0.a1 Prupe.1G115700_v2.0.a1
pyrus_communis pycom16g12970
rosa_chinensis RchiOBHm_Chr4g0425571
rosa_laevigata RLG00000007353
rosa_multiflora Rmu_sc0001900.1_g000001 Rmu_sc0003958.1_g000018
rosa_roxburghii Rroxscaffold_5G00367540
rosa_rugosa Rorug04G0204200
rosa_samantha Rh4AG261100 Rh4BG267000 Rh4CG278200
rosa_wichuraiana Rw4G022610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 399
Acc36I ACCTGC 2 cut(s) 517, 807
Acc65I GGTACC 1 cut(s) 217
AccB1I GGYRCC 2 cut(s) 217, 463
AccII CGCG 2 cut(s) 56, 120
AciI CCGC 4 cut(s) 75, 190, 543, 600
AclWI GGATC 6 cut(s) 174, 290, 303, 601, 659, 672
AcsI RAATTY 1 cut(s) 643
AfaI GTAC 3 cut(s) 91, 165, 219
AfiI CCNNNNNNNGG 3 cut(s) 214, 361, 801
AgsI TTSAA 2 cut(s) 265, 336
AjnI CCWGG 1 cut(s) 124
AleI CACNNNNGTG 1 cut(s) 207
AluBI AGCT 5 cut(s) 434, 556, 696, 712, 721
AluI AGCT 5 cut(s) 434, 556, 696, 712, 721
Alw26I GTCTC 1 cut(s) 353
AlwI GGATC 6 cut(s) 174, 290, 303, 601, 659, 672
AoxI GGCC 1 cut(s) 344
ApoI RAATTY 1 cut(s) 643
AseI ATTAAT 1 cut(s) 428
Asp718I GGTACC 1 cut(s) 217
BaeI ACNNNNGTAYC 2 cut(s) 766, 799
BamHI GGATCC 2 cut(s) 295, 664
BanI GGYRCC 2 cut(s) 217, 463
BbsI GAAGAC 1 cut(s) 505
BccI CCATC 1 cut(s) 266
BceAI ACGGC 2 cut(s) 177, 621
BciT130I CCWGG 1 cut(s) 126
BcoDI GTCTC 1 cut(s) 353
BfaI CTAG 4 cut(s) 308, 411, 482, 689
BfuAI ACCTGC 2 cut(s) 517, 807
BglI GCCNNNNNGGC 1 cut(s) 605
BisI GCNGC 1 cut(s) 600
BlpI GCTNAGC 1 cut(s) 102
BlsI GCNGC 1 cut(s) 601
Bme1390I CCNGG 1 cut(s) 126
BmiI GGNNCC 5 cut(s) 219, 231, 297, 465, 666
BmrFI CCNGG 1 cut(s) 126
BmsI GCATC 5 cut(s) 151, 394, 718, 800, 818
BpiI GAAGAC 1 cut(s) 505
BpmI CTGGAG 1 cut(s) 458
Bpu1102I GCTNAGC 1 cut(s) 102
Bsa29I ATCGAT 1 cut(s) 766
BsaJI CCNNGG 2 cut(s) 213, 459
Bsc4I CCNNNNNNNGG 3 cut(s) 214, 361, 801
Bse1I ACTGG 2 cut(s) 143, 327
BseBI CCWGG 1 cut(s) 126
BseCI ATCGAT 1 cut(s) 766
BseDI CCNNGG 2 cut(s) 213, 459
BseGI GGATG 2 cut(s) 130, 791
BseLI CCNNNNNNNGG 3 cut(s) 214, 361, 801
BseMII CTCAG 1 cut(s) 116
BseNI ACTGG 2 cut(s) 143, 327
BseRI GAGGAG 1 cut(s) 801
BsgI GTGCAG 1 cut(s) 462
Bsh1236I CGCG 2 cut(s) 56, 120
Bsh1285I CGRYCG 1 cut(s) 26
BshFI GGCC 1 cut(s) 346
BshNI GGYRCC 2 cut(s) 217, 463
BshVI ATCGAT 1 cut(s) 766
BsiEI CGRYCG 1 cut(s) 26
BsiWI CGTACG 1 cut(s) 163
BslI CCNNNNNNNGG 3 cut(s) 214, 361, 801
BsmAI GTCTC 1 cut(s) 353
BsmBI CGTCTC 1 cut(s) 353
BsnI GGCC 1 cut(s) 346
Bsp143I GATC 7 cut(s) 11, 23, 179, 295, 593, 664, 685
Bsp1720I GCTNAGC 1 cut(s) 102
Bsp19I CCATGG 1 cut(s) 459
Bsp68I TCGCGA 1 cut(s) 120
BspACI CCGC 4 cut(s) 75, 190, 543, 600
BspANI GGCC 1 cut(s) 346
BspCNI CTCAG 1 cut(s) 115
BspDI ATCGAT 1 cut(s) 766
BspFNI CGCG 2 cut(s) 56, 120
BspLI GGNNCC 5 cut(s) 219, 231, 297, 465, 666
BspMI ACCTGC 2 cut(s) 517, 807
BspPI GGATC 6 cut(s) 174, 290, 303, 601, 659, 672
BspT107I GGYRCC 2 cut(s) 217, 463
BsrI ACTGG 2 cut(s) 143, 327
BssECI CCNNGG 2 cut(s) 213, 459
BssMI GATC 7 cut(s) 11, 23, 179, 295, 593, 664, 685
BssT1I CCWWGG 1 cut(s) 459
Bst2UI CCWGG 1 cut(s) 126
Bst4CI ACNGT 1 cut(s) 149
Bst6I CTCTTC 1 cut(s) 306
BstC8I GCNNGC 4 cut(s) 122, 368, 468, 807
BstDEI CTNAG 3 cut(s) 102, 320, 722
BstDSI CCRYGG 1 cut(s) 459
BstF5I GGATG 2 cut(s) 130, 791
BstFNI CGCG 2 cut(s) 56, 120
BstKTI GATC 7 cut(s) 14, 26, 182, 298, 596, 667, 688
BstMAI GTCTC 1 cut(s) 353
BstMBI GATC 7 cut(s) 11, 23, 179, 295, 593, 664, 685
BstMCI CGRYCG 1 cut(s) 26
BstMWI GCNNNNNNNGC 4 cut(s) 476, 485, 605, 718
BstNI CCWGG 1 cut(s) 126
BstSCI CCNGG 1 cut(s) 124
BstUI CGCG 2 cut(s) 56, 120
BstV2I GAAGAC 1 cut(s) 505
BstX2I RGATCY 2 cut(s) 295, 664
BstYI RGATCY 2 cut(s) 295, 664
Bsu15I ATCGAT 1 cut(s) 766
BsuRI GGCC 1 cut(s) 346
BsuTUI ATCGAT 1 cut(s) 766
BtgI CCRYGG 1 cut(s) 459
BtsCI GGATG 2 cut(s) 130, 791
BtsI GCAGTG 1 cut(s) 453
BtsIMutI CAGTG 4 cut(s) 136, 154, 297, 453
BtuMI TCGCGA 1 cut(s) 120
BveI ACCTGC 2 cut(s) 517, 807
Cac8I GCNNGC 4 cut(s) 122, 368, 468, 807
ClaI ATCGAT 1 cut(s) 766
Csp6I GTAC 3 cut(s) 90, 164, 218
CspCI CAANNNNNGTGG 2 cut(s) 516, 551
CviAII CATG 2 cut(s) 351, 460
CviQI GTAC 3 cut(s) 90, 164, 218
DdeI CTNAG 3 cut(s) 102, 320, 722
DpnI GATC 7 cut(s) 13, 25, 181, 297, 595, 666, 687
DpnII GATC 7 cut(s) 11, 23, 179, 295, 593, 664, 685
Eam1104I CTCTTC 1 cut(s) 306
EarI CTCTTC 1 cut(s) 306
EciI GGCGGA 1 cut(s) 179
Eco130I CCWWGG 1 cut(s) 459
Eco147I AGGCCT 1 cut(s) 346
EcoRII CCWGG 1 cut(s) 124
EcoT14I CCWWGG 1 cut(s) 459
ErhI CCWWGG 1 cut(s) 459
Esp3I CGTCTC 1 cut(s) 353
FaeI CATG 2 cut(s) 354, 463
FalI AAGNNNNNCTT 2 cut(s) 789, 821
FatI CATG 2 cut(s) 350, 459
Fnu4HI GCNGC 1 cut(s) 600
FokI GGATG 2 cut(s) 117, 778
Fsp4HI GCNGC 1 cut(s) 600
FspBI CTAG 4 cut(s) 308, 411, 482, 689
GluI GCNGC 1 cut(s) 600
GsuI CTGGAG 1 cut(s) 458
HaeIII GGCC 1 cut(s) 346
Hin1II CATG 2 cut(s) 354, 463
HinfI GANTC 4 cut(s) 17, 78, 95, 539
Hpy188I TCNGA 2 cut(s) 16, 184
Hpy188III TCNNGA 5 cut(s) 21, 119, 437, 591, 689
Hpy99I CGWCG 2 cut(s) 56, 120
HpyAV CCTTC 2 cut(s) 357, 436
HpyCH4III ACNGT 1 cut(s) 149
HpyCH4IV ACGT 2 cut(s) 162, 519
HpyCH4V TGCA 4 cut(s) 479, 707, 731, 809
HpyF10VI GCNNNNNNNGC 4 cut(s) 476, 485, 605, 718
HpyF3I CTNAG 3 cut(s) 102, 320, 722
HpySE526I ACGT 2 cut(s) 162, 519
Hsp92II CATG 2 cut(s) 354, 463
KpnI GGTACC 1 cut(s) 221
Kzo9I GATC 7 cut(s) 11, 23, 179, 295, 593, 664, 685
LmnI GCTCC 1 cut(s) 788
LweI GCATC 5 cut(s) 151, 394, 718, 800, 818
MaeI CTAG 4 cut(s) 308, 411, 482, 689
MaeII ACGT 2 cut(s) 162, 519
MaeIII GTNAC 1 cut(s) 278
MalI GATC 7 cut(s) 13, 25, 181, 297, 595, 666, 687
MboI GATC 7 cut(s) 11, 23, 179, 295, 593, 664, 685
MboII GAAGA 3 cut(s) 30, 323, 510
MflI RGATCY 2 cut(s) 295, 664
MluCI AATT 2 cut(s) 425, 643
MlyI GAGTC 3 cut(s) 72, 89, 548
MnlI CCTC 8 cut(s) 144, 208, 269, 309, 478, 517, 742, 779
MseI TTAA 2 cut(s) 428, 549
MslI CAYNNNNRTG 2 cut(s) 147, 207
MspR9I CCNGG 1 cut(s) 126
MvaI CCWGG 1 cut(s) 126
MvnI CGCG 2 cut(s) 56, 120
MwoI GCNNNNNNNGC 4 cut(s) 476, 485, 605, 718
NcoI CCATGG 1 cut(s) 459
NdeII GATC 7 cut(s) 11, 23, 179, 295, 593, 664, 685
NlaIII CATG 2 cut(s) 354, 463
NlaIV GGNNCC 5 cut(s) 219, 231, 297, 465, 666
NmeAIII GCCGAG 2 cut(s) 77, 238
NruI TCGCGA 1 cut(s) 120
OliI CACNNNNGTG 1 cut(s) 207
PceI AGGCCT 1 cut(s) 346
PfeI GAWTC 1 cut(s) 17
Pfl23II CGTACG 1 cut(s) 163
PkrI GCNGC 1 cut(s) 601
Ple19I CGATCG 1 cut(s) 26
PleI GAGTC 3 cut(s) 72, 89, 547
PpsI GAGTC 3 cut(s) 72, 89, 547
PshBI ATTAAT 1 cut(s) 428
PsiI TTATAA 1 cut(s) 399
Psp6I CCWGG 1 cut(s) 124
PspGI CCWGG 1 cut(s) 124
PspLI CGTACG 1 cut(s) 163
PspN4I GGNNCC 5 cut(s) 219, 231, 297, 465, 666
PsuI RGATCY 2 cut(s) 295, 664
PvuI CGATCG 1 cut(s) 26
RruI TCGCGA 1 cut(s) 120
RsaI GTAC 3 cut(s) 91, 165, 219
RsaNI GTAC 3 cut(s) 90, 164, 218
RseI CAYNNNNRTG 2 cut(s) 147, 207
SaqAI TTAA 2 cut(s) 428, 549
SatI GCNGC 1 cut(s) 600
Sau3AI GATC 7 cut(s) 11, 23, 179, 295, 593, 664, 685
SchI GAGTC 3 cut(s) 72, 89, 548
ScrFI CCNGG 1 cut(s) 126
SfaNI GCATC 5 cut(s) 151, 394, 718, 800, 818
SmiMI CAYNNNNRTG 2 cut(s) 147, 207
Sse9I AATT 2 cut(s) 425, 643
SseBI AGGCCT 1 cut(s) 346
SsiI CCGC 4 cut(s) 75, 190, 543, 600
SspMI CTAG 4 cut(s) 308, 411, 482, 689
StuI AGGCCT 1 cut(s) 346
StyD4I CCNGG 1 cut(s) 124
StyI CCWWGG 1 cut(s) 459
TaaI ACNGT 1 cut(s) 149
TaiI ACGT 2 cut(s) 165, 522
TaqI TCGA 4 cut(s) 26, 178, 388, 766
TasI AATT 2 cut(s) 425, 643
TauI GCSGC 1 cut(s) 602
TfiI GAWTC 1 cut(s) 17
Tru1I TTAA 2 cut(s) 428, 549
Tru9I TTAA 2 cut(s) 428, 549
TscAI CASTG 4 cut(s) 143, 154, 297, 453
TspDTI ATGAA 1 cut(s) 339
TspGWI ACGGA 1 cut(s) 104
TspRI CASTG 4 cut(s) 143, 154, 297, 453
VspI ATTAAT 1 cut(s) 428
XapI RAATTY 1 cut(s) 643
XbaI TCTAGA 1 cut(s) 688
XspI CTAG 4 cut(s) 308, 411, 482, 689
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.