Rw4G022610

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0014038
Physical Location & Seq
Forward (+)
48059714 .. 48065447
5734 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G022610.1

Sequence Viewer

Length: 2394 bp
ATGGCTGCAAATTCACTACCAATACTATATGCTCTTGTTCTCGCACTGAGCCTGTTCGCGTTTCAATCCGAGTCGGCGCCTCAAGCTTTCCGGAGAGATCCAGGTCACCCTCAGTGGCACCACGGCGCCTTCCACGACGTCCGTGACACCATTCGCTCCGATGTGCGCCGCATGCTCCATTCTCGCGCCGAGGTGCCGTTCCAGGTTCCACTGGAAGTGAATGTGGTGCTTGTTGGTTTCAATGGTGATGGAGGCTATAGGTACTCGGTGGATGCGCACAAATTGGAGGAGCTGCTCAAGATCAGCTTCCCGACACACCGACCGGCGTGTCTTGAGACCGGGGAGGCTCTCGATATCGAGCATCAAATTGTCTACAATGCCTTCCCTGCTGGGCAGCCGGAGCTTATAGCTCTCGAGAAGGCTTTGAAAGAGGCGATGGTTCCTGCAGGAAATGCGAGAGAGTCTGAATTTGGAAGGGAAGTACCTCTTTTTGAGGTGGATGCAACTTTAGTGGAGCCGGTATTTCAGAGGTTGTATTCCTATATATTTGACACAGACAATTCGGCTGTTTCTGCTATGGAGTTGGATCGCCAAGTGCCAAGTGCAATATTTGTGGTCAATTTTGATAAGGTCAGAATGGATCCTAGGAATAAGGAAATTGATCTTGACAACTTGATGTATGGAAAAATTACACAACTAACTGATGATGATATGCAAAAACAAGAGGGAGACTATATTTATCGCTATCGGTACAATGGAGGAGGTGCCTCTCAAGTTTGGCTGGGCTATGGCAGATATGTAGTGATCGATCTCTCGGCCGGCCCGTGTACTTATGGAAAGATCGAAACTGAAGAGGGAACTGTCAGTTCTCGGACCCTGCCACGACTACGGAATATTATGTTTCCAAGAGGAATGGGTGCAGACCGTGCAGCTAGTGATCACTCTACACATGATGTATTTGTTGGACAACTTGCCTCTCTAGTATCCACCACGATTGAGCATGTTATAGCTCCAGATGTTAGATTTGAAACTGTTGATCTGACAACAAGGCTGCTTTTACCAATAATTGTGCTGCAAAATCATAATCGGTACAATATTATAGAGAAGGGCCACAACTACAGTATAAATATTGAAGCAATTGAGGCACAGGTGAAGAAAATGGTTCATGATGGGCAAGAAGTTGTGATCGTTGGGGGTTCACATTCATTACATCGCCATGAGAAGTTGGCAATTGCCAATGATGGACGCTTTCATGTTCATACCAAGACATATCTGGATGGTGCTCTTCTTAAAGAAGAGATGGAACGTTCTGCTGATGTGCTTGCTGCTGGTTTGCTTGAGGTGGCTGACCCATCTCTTTCGAGTAAATTTTTCCTCCGCCAGCATTGGAATGATGAATCTGATGGTGCAAGTGATTCTATACTCAAACATAAACCTCTTTGGTCTACTTATGACAAAAAAGGTGGCAAGAAGAAAAAGAAAAAAGAAAGGAAACGGGGAGATCTGTACCGAACTTATGGAACAAGAGTAATTCCTGTCTTTGTGCTATCATTGGCTGATGTGGACCCACACCTTATGATGGAAGACGAAAGTCTTGTATGGACAAGCAAAGATGTCGTGATTGTACTTGAGCATCAAAATCAGCAGATACCTCTTAGTTATGTGTCAGAAACACAGAGAAGGCATGCCGAACCATCTCAGGTACAGCGTCATATATTGGCAGGGCTTGCTTCTGCTGTGGCAGGGTTGAGTGCACCATATGAGAAGGCTTCTCATGTACATGAAAGGCCGGTCGTGAATTGGCTATGGGCAGCTGGGTGTCATCCATTTGGACCATTCTCTAATACTTCTAAAGTCAGCCAAATGCTTCAAGATGTTGCATTGAGGAACTCAATATATGCGCGTGTAGATTCTGCACTCCACAAAATCCGTGATACGTCAGAGGCTGTACAAACATTTGCTGCCGAGTATCTGAAAACTCCGCTTGGTGAGCCAGTGAAGGGCAAGAAGAACAAAACCACCACTGAGCTATGGGTGGAGAAGTTTTACAAGAAGACCACTAACTTGCCTGAACCTTTCCCACATGAATTAGTTGATAGATTGGAGAACTTCTTAAATAACCTTGAGGAACAGCTAGTAGATTTGTCTTCATCATTGTATGGTCACCGGCTCCAAGATGCACATTTCAACAGTTCTGAGATTCTCCAGAGTTCCATATTTACCCAGCAGTATGTAGATCATGTTTTGTCAAACGAGAGGGAAAAGATGAAATGCTGCAACATTGAGTACAAATATCCTGTGCAGTCATCTCAAACTTATGTCTATGGGGGGATTCTTCTTGCTGGATTCGTTGTATATTTTATAGTCATTTTCTTTTCAAACCCTGTACGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

797

Amino Acids

90.12

Weight (kDa)

6.13

Isoelectric Point (pI)

43.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7906 PF25483 69 - 338 1.1e-56 Domain of unknown function (DUF7906)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014038)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16180
fragaria_vesca FvH4_4g19930 FvH4_4g19930
malus_domestica MD16G1152500.v1.1
prunus_persica Prupe.1G115700_v2.0.a1 Prupe.1G115700_v2.0.a1
pyrus_communis pycom16g12970
rosa_chinensis RchiOBHm_Chr4g0425571
rosa_laevigata RLG00000007353
rosa_multiflora Rmu_sc0001900.1_g000001 Rmu_sc0003958.1_g000018
rosa_roxburghii Rroxscaffold_5G00367540
rosa_rugosa Rorug04G0204200
rosa_samantha Rh4AG261100 Rh4BG267000 Rh4CG278200
rosa_wichuraiana Rw4G022610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 327
AatII GACGTC 1 cut(s) 141
Acc16I TGCGCA 1 cut(s) 276
AccB1I GGYRCC 5 cut(s) 76, 117, 125, 193, 764
AccI GTMKAC 2 cut(s) 372, 1445
AccII CGCG 3 cut(s) 59, 186, 1903
AccIII TCCGGA 1 cut(s) 90
AciI CCGC 3 cut(s) 169, 1378, 1982
AclI AACGTT 1 cut(s) 1306
AclWI GGATC 4 cut(s) 92, 594, 635, 648
AcoI YGGCCR 1 cut(s) 816
AcsI RAATTY 3 cut(s) 10, 467, 1367
AcuI CTGAAG 1 cut(s) 870
AcyI GRCGYC 3 cut(s) 77, 126, 138
AfiI CCNNNNNNNGG 2 cut(s) 1579, 2000
AgsI TTSAA 8 cut(s) 65, 241, 427, 1028, 1133, 1871, 2188, 2379
AjnI CCWGG 2 cut(s) 100, 201
Alw21I GWGCWC 2 cut(s) 1285, 1756
Alw26I GTCTC 2 cut(s) 329, 723
Alw44I GTGCAC 1 cut(s) 1752
AlwI GGATC 4 cut(s) 92, 594, 635, 648
AlwNI CAGNNNCTG 1 cut(s) 1946
Ama87I CYCGRG 1 cut(s) 413
Aor13HI TCCGGA 1 cut(s) 90
AoxI GGCC 4 cut(s) 816, 820, 1108, 1787
ApaLI GTGCAC 1 cut(s) 1752
ApoI RAATTY 3 cut(s) 10, 467, 1367
AspA2I CCTAGG 1 cut(s) 644
AspLEI GCGC 6 cut(s) 79, 128, 168, 188, 277, 1903
AspS9I GGNCC 5 cut(s) 821, 873, 1108, 1564, 1832
AsuC2I CCSGG 1 cut(s) 340
AsuHPI GGTGA 5 cut(s) 98, 257, 1162, 2000, 2156
AvaI CYCGRG 1 cut(s) 413
AvaII GGWCC 3 cut(s) 873, 1564, 1832
AvrII CCTAGG 1 cut(s) 644
BaeGI GKGCMC 1 cut(s) 1756
BamHI GGATCC 1 cut(s) 640
BanI GGYRCC 5 cut(s) 76, 117, 125, 193, 764
BbsI GAAGAC 3 cut(s) 1590, 2060, 2139
Bbv12I GWGCWC 2 cut(s) 1285, 1756
BbvI GCAGC 9 cut(s) 279, 406, 941, 1038, 1059, 1312, 1823, 1948, 2261
BceAI ACGGC 2 cut(s) 139, 181
BcgI CGANNNNNNTGC 2 cut(s) 1597, 1631
BciT130I CCWGG 2 cut(s) 102, 203
BciVI GTATCC 1 cut(s) 994
BclI TGATCA 1 cut(s) 937
BcnI CCSGG 1 cut(s) 340
BcoDI GTCTC 2 cut(s) 329, 723
BfaI CTAG 4 cut(s) 645, 933, 980, 2135
BfmI CTRYAG 3 cut(s) 256, 444, 1117
BfoI RGCGCY 2 cut(s) 80, 129
BfuI GTATCC 1 cut(s) 994
BglII AGATCT 1 cut(s) 1501
BlnI CCTAGG 1 cut(s) 644
Bme1390I CCNGG 3 cut(s) 102, 203, 340
Bme18I GGWCC 3 cut(s) 873, 1564, 1832
BmeT110I CYCGRG 1 cut(s) 413
BmgT120I GGNCC 5 cut(s) 821, 873, 1108, 1564, 1832
BmrFI CCNGG 3 cut(s) 102, 203, 340
BmsI GCATC 5 cut(s) 262, 370, 490, 1642, 2167
BoxI GACNNNNGTC 1 cut(s) 1590
BpiI GAAGAC 3 cut(s) 1590, 2060, 2139
BpmI CTGGAG 2 cut(s) 996, 2189
BpuEI CTTGAG 7 cut(s) 66, 281, 353, 756, 1358, 1649, 2144
BpuMI CCSGG 1 cut(s) 340
Bsa29I ATCGAT 1 cut(s) 807
BsaHI GRCGYC 3 cut(s) 77, 126, 138
BsaI GGTCTC 1 cut(s) 329
BsaJI CCNNGG 4 cut(s) 121, 189, 339, 644
BsaWI WCCGGW 1 cut(s) 90
Bsc4I CCNNNNNNNGG 2 cut(s) 1579, 2000
Bse118I RCCGGY 5 cut(s) 322, 517, 818, 1789, 2166
Bse1I ACTGG 2 cut(s) 216, 1994
BseAI TCCGGA 1 cut(s) 90
BseBI CCWGG 2 cut(s) 102, 203
BseCI ATCGAT 1 cut(s) 807
BseDI CCNNGG 4 cut(s) 121, 189, 339, 644
BseGI GGATG 4 cut(s) 277, 505, 1282, 1822
BseLI CCNNNNNNNGG 2 cut(s) 1579, 2000
BseMII CTCAG 5 cut(s) 38, 125, 1712, 2016, 2187
BseNI ACTGG 2 cut(s) 216, 1994
BseRI GAGGAG 2 cut(s) 302, 774
BseSI GKGCMC 1 cut(s) 1756
BseX3I CGGCCG 1 cut(s) 816
BseXI GCAGC 9 cut(s) 279, 406, 941, 1038, 1059, 1312, 1823, 1948, 2261
BseYI CCCAGC 4 cut(s) 389, 781, 1814, 2223
BsgI GTGCAG 4 cut(s) 939, 948, 1899, 2321
Bsh1236I CGCG 3 cut(s) 59, 186, 1903
Bsh1285I CGRYCG 3 cut(s) 323, 819, 1794
BshFI GGCC 4 cut(s) 818, 822, 1110, 1789
BshNI GGYRCC 5 cut(s) 76, 117, 125, 193, 764
BshVI ATCGAT 1 cut(s) 807
BsiEI CGRYCG 3 cut(s) 323, 819, 1794
BsiHKAI GWGCWC 2 cut(s) 1285, 1756
BsiHKCI CYCGRG 1 cut(s) 413
BsiSI CCGG 8 cut(s) 91, 323, 339, 398, 518, 819, 1790, 2167
BslI CCNNNNNNNGG 2 cut(s) 1579, 2000
BsmAI GTCTC 2 cut(s) 329, 723
BsnI GGCC 4 cut(s) 818, 822, 1110, 1789
Bso31I GGTCTC 1 cut(s) 329
BsoBI CYCGRG 1 cut(s) 413
Bsp1286I GDGCHC 2 cut(s) 1285, 1756
Bsp13I TCCGGA 1 cut(s) 90
Bsp1407I TGTACA 2 cut(s) 1777, 1948
BspACI CCGC 3 cut(s) 169, 1378, 1982
BspANI GGCC 4 cut(s) 818, 822, 1110, 1789
BspCNI CTCAG 5 cut(s) 39, 124, 1711, 2017, 2188
BspDI ATCGAT 1 cut(s) 807
BspEI TCCGGA 1 cut(s) 90
BspFNI CGCG 3 cut(s) 59, 186, 1903
BspHI TCATGA 1 cut(s) 1165
BspMAI CTGCAG 1 cut(s) 448
BspPI GGATC 4 cut(s) 92, 594, 635, 648
BspQI GCTCTTC 1 cut(s) 1290
BspT107I GGYRCC 5 cut(s) 76, 117, 125, 193, 764
BspTNI GGTCTC 1 cut(s) 329
BsrFI RCCGGY 5 cut(s) 322, 517, 818, 1789, 2166
BsrGI TGTACA 2 cut(s) 1777, 1948
BsrI ACTGG 2 cut(s) 216, 1994
BssAI RCCGGY 5 cut(s) 322, 517, 818, 1789, 2166
BssECI CCNNGG 4 cut(s) 121, 189, 339, 644
BssNI GRCGYC 3 cut(s) 77, 126, 138
BssT1I CCWWGG 1 cut(s) 644
Bst2UI CCWGG 2 cut(s) 102, 203
Bst4CI ACNGT 5 cut(s) 862, 926, 1033, 1121, 2192
Bst6I CTCTTC 3 cut(s) 846, 1290, 1290
BstACI GRCGYC 3 cut(s) 77, 126, 138
BstAPI GCANNNNNTGC 3 cut(s) 452, 926, 1727
BstAUI TGTACA 2 cut(s) 1777, 1948
BstC8I GCNNGC 6 cut(s) 173, 820, 1323, 1382, 1686, 1728
BstDEI CTNAG 6 cut(s) 47, 111, 1655, 1698, 2025, 2196
BstDSI CCRYGG 1 cut(s) 121
BstEII GGTNACC 2 cut(s) 104, 2162
BstF5I GGATG 4 cut(s) 277, 505, 1282, 1822
BstFNI CGCG 3 cut(s) 59, 186, 1903
BstH2I RGCGCY 2 cut(s) 80, 129
BstHHI GCGC 6 cut(s) 79, 128, 168, 188, 277, 1903
BstMAI GTCTC 2 cut(s) 329, 723
BstMCI CGRYCG 3 cut(s) 323, 819, 1794
BstNI CCWGG 2 cut(s) 102, 203
BstNSI RCATGY 3 cut(s) 175, 1004, 1688
BstPAI GACNNNNGTC 1 cut(s) 1590
BstPI GGTNACC 2 cut(s) 104, 2162
BstSCI CCNGG 3 cut(s) 100, 201, 338
BstSFI CTRYAG 3 cut(s) 256, 444, 1117
BstSLI GKGCMC 1 cut(s) 1756
BstUI CGCG 3 cut(s) 59, 186, 1903
BstV1I GCAGC 9 cut(s) 279, 406, 941, 1038, 1059, 1312, 1823, 1948, 2261
BstV2I GAAGAC 3 cut(s) 1590, 2060, 2139
BstX2I RGATCY 3 cut(s) 97, 640, 1501
BstYI RGATCY 3 cut(s) 97, 640, 1501
BstZI CGGCCG 1 cut(s) 816
Bsu15I ATCGAT 1 cut(s) 807
BsuI GTATCC 1 cut(s) 994
BsuRI GGCC 4 cut(s) 818, 822, 1110, 1789
BsuTUI ATCGAT 1 cut(s) 807
BtgI CCRYGG 1 cut(s) 121
BtgZI GCGATG 2 cut(s) 449, 1196
BtsCI GGATG 4 cut(s) 277, 505, 1282, 1822
BtsIMutI CAGTG 5 cut(s) 44, 119, 209, 2001, 2022
Cac8I GCNNGC 6 cut(s) 173, 820, 1323, 1382, 1686, 1728
CaiI CAGNNNCTG 1 cut(s) 1946
CciI TCATGA 1 cut(s) 1165
CfoI GCGC 6 cut(s) 79, 128, 168, 188, 277, 1903
Cfr10I RCCGGY 5 cut(s) 322, 517, 818, 1789, 2166
Cfr13I GGNCC 5 cut(s) 821, 873, 1108, 1564, 1832
ClaI ATCGAT 1 cut(s) 807
CseI GACGC 2 cut(s) 1254, 1697
CspCI CAANNNNNGTGG 8 cut(s) 492, 527, 594, 629, 976, 1011, 1444, 1479
DdeI CTNAG 6 cut(s) 47, 111, 1655, 1698, 2025, 2196
DinI GGCGCC 2 cut(s) 78, 127
DrdI GACNNNNNNGTC 1 cut(s) 327
DseDI GACNNNNNNGTC 1 cut(s) 327
EaeI YGGCCR 1 cut(s) 816
EagI CGGCCG 1 cut(s) 816
Eam1104I CTCTTC 3 cut(s) 846, 1290, 1290
EarI CTCTTC 3 cut(s) 846, 1290, 1290
EciI GGCGGA 1 cut(s) 1367
EclXI CGGCCG 1 cut(s) 816
Eco130I CCWWGG 1 cut(s) 644
Eco31I GGTCTC 1 cut(s) 329
Eco32I GATATC 1 cut(s) 355
Eco47I GGWCC 3 cut(s) 873, 1564, 1832
Eco52I CGGCCG 1 cut(s) 816
Eco57I CTGAAG 1 cut(s) 870
Eco88I CYCGRG 1 cut(s) 413
Eco91I GGTNACC 2 cut(s) 104, 2162
EcoO65I GGTNACC 2 cut(s) 104, 2162
EcoRII CCWGG 2 cut(s) 100, 201
EcoRV GATATC 1 cut(s) 355
EcoT14I CCWWGG 1 cut(s) 644
EgeI GGCGCC 2 cut(s) 78, 127
EheI GGCGCC 2 cut(s) 78, 127
ErhI CCWWGG 1 cut(s) 644
FalI AAGNNNNNCTT 4 cut(s) 290, 322, 471, 503
FauNDI CATATG 1 cut(s) 1759
FbaI TGATCA 1 cut(s) 937
FblI GTMKAC 2 cut(s) 372, 1445
FokI GGATG 4 cut(s) 284, 512, 1289, 1809
FseI GGCCGGCC 1 cut(s) 822
FspAI RTGCGCAY 1 cut(s) 276
FspBI CTAG 4 cut(s) 645, 933, 980, 2135
FspI TGCGCA 1 cut(s) 276
GlaI GCGC 6 cut(s) 78, 127, 167, 187, 276, 1902
GsaI CCCAGC 4 cut(s) 393, 785, 1818, 2227
GsuI CTGGAG 2 cut(s) 996, 2189
HaeII RGCGCY 2 cut(s) 80, 129
HaeIII GGCC 4 cut(s) 818, 822, 1110, 1789
HapII CCGG 8 cut(s) 91, 323, 339, 398, 518, 819, 1790, 2167
HgaI GACGC 2 cut(s) 1254, 1697
HhaI GCGC 6 cut(s) 79, 128, 168, 188, 277, 1903
Hin1I GRCGYC 3 cut(s) 77, 126, 138
Hin6I GCGC 6 cut(s) 77, 126, 166, 186, 275, 1901
HinP1I GCGC 6 cut(s) 77, 126, 166, 186, 275, 1901
HindIII AAGCTT 1 cut(s) 84
HinfI GANTC 8 cut(s) 71, 461, 1397, 1415, 1910, 2200, 2332, 2346
HpaII CCGG 8 cut(s) 91, 323, 339, 398, 518, 819, 1790, 2167
HphI GGTGA 5 cut(s) 98, 257, 1162, 2000, 2156
Hpy166II GTNNAC 6 cut(s) 373, 828, 1199, 1446, 1564, 1754
Hpy8I GTNNAC 6 cut(s) 373, 828, 1199, 1446, 1564, 1754
Hpy99I CGWCG 1 cut(s) 140
HpyAV CCTTC 8 cut(s) 139, 391, 412, 468, 1099, 1674, 1759, 1993
HpyCH4III ACNGT 5 cut(s) 862, 926, 1033, 1121, 2192
HpyCH4IV ACGT 3 cut(s) 138, 1306, 1937
HpyF3I CTNAG 6 cut(s) 47, 111, 1655, 1698, 2025, 2196
HpySE526I ACGT 3 cut(s) 138, 1306, 1937
Hsp92I GRCGYC 3 cut(s) 77, 126, 138
HspAI GCGC 6 cut(s) 77, 126, 166, 186, 275, 1901
KasI GGCGCC 2 cut(s) 76, 125
Kpn2I TCCGGA 1 cut(s) 90
KroI GCCGGC 1 cut(s) 818
KroNI GCCGGC 1 cut(s) 820
Ksp22I TGATCA 1 cut(s) 937
LguI GCTCTTC 1 cut(s) 1290
LmnI GCTCC 7 cut(s) 161, 180, 289, 400, 514, 1015, 2175
Lsp1109I GCAGC 9 cut(s) 279, 406, 941, 1038, 1059, 1312, 1823, 1948, 2261
LweI GCATC 5 cut(s) 262, 370, 490, 1642, 2167
MaeI CTAG 4 cut(s) 645, 933, 980, 2135
MaeII ACGT 3 cut(s) 138, 1306, 1937
MaeIII GTNAC 3 cut(s) 104, 143, 2162
MfeI CAATTG 2 cut(s) 1137, 1230
MflI RGATCY 3 cut(s) 97, 640, 1501
MhlI GDGCHC 2 cut(s) 1285, 1756
Mly113I GGCGCC 2 cut(s) 77, 126
MlyI GAGTC 2 cut(s) 80, 470
MmeI TCCRAC 2 cut(s) 564, 943
MroI TCCGGA 1 cut(s) 90
MroNI GCCGGC 1 cut(s) 818
MseI TTAA 2 cut(s) 1290, 2114
MslI CAYNNNNRTG 3 cut(s) 1215, 1389, 1779
MspA1I CMGCKG 1 cut(s) 1814
MspI CCGG 8 cut(s) 91, 323, 339, 398, 518, 819, 1790, 2167
MspR9I CCNGG 3 cut(s) 102, 203, 340
MunI CAATTG 2 cut(s) 1137, 1230
MvaI CCWGG 2 cut(s) 102, 203
MvnI CGCG 3 cut(s) 59, 186, 1903
NaeI GCCGGC 1 cut(s) 820
NarI GGCGCC 2 cut(s) 77, 126
NciI CCSGG 1 cut(s) 340
NdeI CATATG 1 cut(s) 1759
NgoMIV GCCGGC 1 cut(s) 818
NmeAIII GCCGAG 3 cut(s) 214, 794, 1990
NmuCI GTSAC 3 cut(s) 104, 143, 2162
NsbI TGCGCA 1 cut(s) 276
NspI RCATGY 3 cut(s) 175, 1004, 1688
PaeI GCATGC 2 cut(s) 175, 1688
PaeR7I CTCGAG 1 cut(s) 413
PagI TCATGA 1 cut(s) 1165
PciSI GCTCTTC 1 cut(s) 1290
PcsI WCGNNNNNNNCGW 1 cut(s) 821
PdiI GCCGGC 1 cut(s) 820
PfeI GAWTC 6 cut(s) 1397, 1415, 1910, 2200, 2332, 2346
PleI GAGTC 2 cut(s) 79, 469
PluTI GGCGCC 2 cut(s) 80, 129
PpsI GAGTC 2 cut(s) 79, 469
PshAI GACNNNNGTC 1 cut(s) 1590
Psp1406I AACGTT 1 cut(s) 1306
Psp6I CCWGG 2 cut(s) 100, 201
PspEI GGTNACC 2 cut(s) 104, 2162
PspFI CCCAGC 4 cut(s) 389, 781, 1814, 2223
PspGI CCWGG 2 cut(s) 100, 201
PspPI GGNCC 5 cut(s) 821, 873, 1108, 1564, 1832
PstI CTGCAG 1 cut(s) 448
PstNI CAGNNNCTG 1 cut(s) 1946
PsuI RGATCY 3 cut(s) 97, 640, 1501
PvuII CAGCTG 1 cut(s) 1814
RigI GGCCGGCC 1 cut(s) 822
RseI CAYNNNNRTG 3 cut(s) 1215, 1389, 1779
SapI GCTCTTC 1 cut(s) 1290
SaqAI TTAA 2 cut(s) 1290, 2114
Sau96I GGNCC 5 cut(s) 821, 873, 1108, 1564, 1832
SbfI CCTGCAGG 1 cut(s) 448
SchI GAGTC 2 cut(s) 80, 470
ScrFI CCNGG 3 cut(s) 102, 203, 340
SdaI CCTGCAGG 1 cut(s) 448
SduI GDGCHC 2 cut(s) 1285, 1756
SfaNI GCATC 5 cut(s) 262, 370, 490, 1642, 2167
SfcI CTRYAG 3 cut(s) 256, 444, 1117
SfoI GGCGCC 2 cut(s) 78, 127
Sfr274I CTCGAG 1 cut(s) 413
SinI GGWCC 3 cut(s) 873, 1564, 1832
SlaI CTCGAG 1 cut(s) 413
SmiMI CAYNNNNRTG 3 cut(s) 1215, 1389, 1779
SmlI CTYRAG 8 cut(s) 81, 296, 332, 413, 771, 1337, 1628, 2123
SmoI CTYRAG 8 cut(s) 81, 296, 332, 413, 771, 1337, 1628, 2123
SphI GCATGC 2 cut(s) 175, 1688
Sse8387I CCTGCAGG 1 cut(s) 448
SsiI CCGC 3 cut(s) 169, 1378, 1982
SspDI GGCGCC 2 cut(s) 76, 125
SspI AATATT 4 cut(s) 609, 895, 1096, 1129
SspMI CTAG 4 cut(s) 645, 933, 980, 2135
StyD4I CCNGG 3 cut(s) 100, 201, 338
StyI CCWWGG 1 cut(s) 644
TaaI ACNGT 5 cut(s) 862, 926, 1033, 1121, 2192
TaiI ACGT 3 cut(s) 141, 1309, 1940
TaqI TCGA 6 cut(s) 351, 357, 414, 807, 843, 1361
TatI WGTACW 5 cut(s) 827, 1624, 1777, 1948, 2286
TauI GCSGC 1 cut(s) 171
TfiI GAWTC 6 cut(s) 1397, 1415, 1910, 2200, 2332, 2346
Tru1I TTAA 2 cut(s) 1290, 2114
Tru9I TTAA 2 cut(s) 1290, 2114
TscAI CASTG 5 cut(s) 51, 119, 216, 2001, 2029
TseFI GTSAC 3 cut(s) 104, 143, 2162
Tsp45I GTSAC 3 cut(s) 104, 143, 2162
TspDTI ATGAA 9 cut(s) 1154, 1194, 1241, 1247, 1410, 1797, 2100, 2139, 2282
TspGWI ACGGA 3 cut(s) 131, 904, 1919
TspRI CASTG 5 cut(s) 51, 119, 216, 2001, 2029
VneI GTGCAC 1 cut(s) 1752
VpaK11BI GGWCC 3 cut(s) 873, 1564, 1832
XapI RAATTY 3 cut(s) 10, 467, 1367
XceI RCATGY 3 cut(s) 175, 1004, 1688
XcmI CCANNNNNNNNNTGG 1 cut(s) 1270
XhoI CTCGAG 1 cut(s) 413
XmaJI CCTAGG 1 cut(s) 644
XmiI GTMKAC 2 cut(s) 372, 1445
XspI CTAG 4 cut(s) 645, 933, 980, 2135
ZraI GACGTC 1 cut(s) 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.