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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G16180 |
| fragaria_vesca | FvH4_4g19930 FvH4_4g19930 |
| malus_domestica | MD16G1152500.v1.1 |
| prunus_persica | Prupe.1G115700_v2.0.a1 Prupe.1G115700_v2.0.a1 |
| pyrus_communis | pycom16g12970 |
| rosa_chinensis | RchiOBHm_Chr4g0425571 |
| rosa_laevigata | RLG00000007353 |
| rosa_multiflora | Rmu_sc0001900.1_g000001 Rmu_sc0003958.1_g000018 |
| rosa_roxburghii | Rroxscaffold_5G00367540 |
| rosa_rugosa | Rorug04G0204200 |
| rosa_samantha | Rh4AG261100 Rh4BG267000 Rh4CG278200 |
| rosa_wichuraiana | Rw4G022610 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 381 |
| AbsI | CCTCGAGG | 1 cut(s) | 2162 |
| AccB1I | GGYRCC | 4 cut(s) | 123, 131, 199, 770 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1756, 2284 |
| AccI | GTMKAC | 2 cut(s) | 2178, 2274 |
| AccII | CGCG | 3 cut(s) | 83, 192, 1971 |
| AciI | CCGC | 7 cut(s) | 81, 172, 175, 1417, 1773, 2001, 2120 |
| AclI | AACGTT | 1 cut(s) | 1345 |
| AclWI | GGATC | 7 cut(s) | 98, 156, 600, 641, 654, 1598, 1611 |
| AcoI | YGGCCR | 1 cut(s) | 1168 |
| AcsI | RAATTY | 5 cut(s) | 600, 1406, 1444, 1902, 1965 |
| AcuI | CTGAAG | 2 cut(s) | 876, 1892 |
| AcvI | CACGTG | 1 cut(s) | 1943 |
| AcyI | GRCGYC | 1 cut(s) | 132 |
| AfaI | GTAC | 6 cut(s) | 269, 489, 1088, 1665, 1989, 2327 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 1426, 1756, 2039, 2284 |
| AflIII | ACRYGT | 1 cut(s) | 1942 |
| Alw21I | GWGCWC | 2 cut(s) | 1674, 1795 |
| Alw26I | GTCTC | 4 cut(s) | 335, 461, 729, 1976 |
| Alw44I | GTGCAC | 1 cut(s) | 1791 |
| AlwI | GGATC | 7 cut(s) | 98, 156, 600, 641, 654, 1598, 1611 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1985 |
| Ama87I | CYCGRG | 1 cut(s) | 2162 |
| AoxI | GGCC | 4 cut(s) | 826, 1105, 1168, 1826 |
| ApaLI | GTGCAC | 1 cut(s) | 1791 |
| ApoI | RAATTY | 5 cut(s) | 600, 1406, 1444, 1902, 1965 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 297, 1255 |
| AspA2I | CCTAGG | 1 cut(s) | 650 |
| AspLEI | GCGC | 4 cut(s) | 85, 134, 194, 2430 |
| AspS9I | GGNCC | 2 cut(s) | 827, 1871 |
| AsuC2I | CCSGG | 1 cut(s) | 108 |
| AsuHPI | GGTGA | 3 cut(s) | 104, 1159, 2039 |
| AvaI | CYCGRG | 1 cut(s) | 2162 |
| AvaII | GGWCC | 1 cut(s) | 1871 |
| AvrII | CCTAGG | 1 cut(s) | 650 |
| AxyI | CCTNAGG | 1 cut(s) | 87 |
| BaeGI | GKGCMC | 1 cut(s) | 1795 |
| BalI | TGGCCA | 1 cut(s) | 1170 |
| BamHI | GGATCC | 2 cut(s) | 646, 1603 |
| BanI | GGYRCC | 4 cut(s) | 123, 131, 199, 770 |
| BbrPI | CACGTG | 1 cut(s) | 1943 |
| BbsI | GAAGAC | 3 cut(s) | 1629, 1726, 2178 |
| Bbv12I | GWGCWC | 2 cut(s) | 1674, 1795 |
| BceAI | ACGGC | 2 cut(s) | 145, 187 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1636, 1670 |
| BciVI | GTATCC | 1 cut(s) | 2343 |
| BclI | TGATCA | 1 cut(s) | 934 |
| BcnI | CCSGG | 1 cut(s) | 108 |
| BcoDI | GTCTC | 4 cut(s) | 335, 461, 729, 1976 |
| BfaI | CTAG | 3 cut(s) | 651, 876, 930 |
| BfmI | CTRYAG | 4 cut(s) | 262, 450, 513, 1114 |
| BfoI | RGCGCY | 1 cut(s) | 135 |
| BfuI | GTATCC | 1 cut(s) | 2343 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 392 |
| BlnI | CCTAGG | 1 cut(s) | 650 |
| Bme1390I | CCNGG | 1 cut(s) | 108 |
| Bme18I | GGWCC | 1 cut(s) | 1871 |
| BmeT110I | CYCGRG | 1 cut(s) | 2162 |
| BmgT120I | GGNCC | 2 cut(s) | 827, 1871 |
| BmrFI | CCNGG | 1 cut(s) | 108 |
| BmsI | GCATC | 3 cut(s) | 376, 496, 1216 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1629 |
| BpiI | GAAGAC | 3 cut(s) | 1629, 1726, 2178 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 339, 371 |
| BpmI | CTGGAG | 2 cut(s) | 993, 2228 |
| BpuEI | CTTGAG | 5 cut(s) | 359, 440, 762, 1688, 1875 |
| BpuMI | CCSGG | 1 cut(s) | 108 |
| Bsa29I | ATCGAT | 3 cut(s) | 276, 754, 813 |
| BsaAI | YACGTR | 1 cut(s) | 1943 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1602 |
| BsaHI | GRCGYC | 1 cut(s) | 132 |
| BsaJI | CCNNGG | 4 cut(s) | 127, 195, 650, 2023 |
| BsaWI | WCCGGW | 1 cut(s) | 1548 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 512, 542 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 1426, 1756, 2039, 2284 |
| Bse1I | ACTGG | 2 cut(s) | 1829, 2033 |
| Bse21I | CCTNAGG | 1 cut(s) | 87 |
| Bse3DI | GCAATG | 3 cut(s) | 904, 1202, 2376 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1602 |
| BseCI | ATCGAT | 3 cut(s) | 276, 754, 813 |
| BseDI | CCNNGG | 4 cut(s) | 127, 195, 650, 2023 |
| BseGI | GGATG | 6 cut(s) | 511, 648, 937, 1321, 1861, 1918 |
| BseJI | GATNNNNATC | 1 cut(s) | 1602 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 1426, 1756, 2039, 2284 |
| BseMI | GCAATG | 3 cut(s) | 904, 1202, 2376 |
| BseMII | CTCAG | 7 cut(s) | 44, 101, 131, 699, 834, 2276, 2283 |
| BseNI | ACTGG | 2 cut(s) | 1829, 2033 |
| BseRI | GAGGAG | 1 cut(s) | 780 |
| BseSI | GKGCMC | 1 cut(s) | 1795 |
| BseYI | CCCAGC | 1 cut(s) | 395 |
| BsgI | GTGCAG | 3 cut(s) | 945, 1938, 2360 |
| Bsh1236I | CGCG | 3 cut(s) | 83, 192, 1971 |
| BshFI | GGCC | 4 cut(s) | 828, 1107, 1170, 1828 |
| BshNI | GGYRCC | 4 cut(s) | 123, 131, 199, 770 |
| BshVI | ATCGAT | 3 cut(s) | 276, 754, 813 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1674, 1795 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2162 |
| BsiSI | CCGG | 5 cut(s) | 97, 108, 392, 1549, 2382 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 1426, 1756, 2039, 2284 |
| BsmAI | GTCTC | 4 cut(s) | 335, 461, 729, 1976 |
| BsmI | GAATGC | 1 cut(s) | 571 |
| BsnI | GGCC | 4 cut(s) | 828, 1107, 1170, 1828 |
| BsoBI | CYCGRG | 1 cut(s) | 2162 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1674, 1795 |
| Bsp1407I | TGTACA | 1 cut(s) | 1987 |
| Bsp68I | TCGCGA | 1 cut(s) | 1971 |
| BspACI | CCGC | 7 cut(s) | 81, 172, 175, 1417, 1773, 2001, 2120 |
| BspANI | GGCC | 4 cut(s) | 828, 1107, 1170, 1828 |
| BspCNI | CTCAG | 7 cut(s) | 45, 100, 130, 700, 833, 2275, 2284 |
| BspDI | ATCGAT | 3 cut(s) | 276, 754, 813 |
| BspFNI | CGCG | 3 cut(s) | 83, 192, 1971 |
| BspMAI | CTGCAG | 1 cut(s) | 454 |
| BspPI | GGATC | 7 cut(s) | 98, 156, 600, 641, 654, 1598, 1611 |
| BspT107I | GGYRCC | 4 cut(s) | 123, 131, 199, 770 |
| BsrDI | GCAATG | 3 cut(s) | 904, 1202, 2376 |
| BsrGI | TGTACA | 1 cut(s) | 1987 |
| BsrI | ACTGG | 2 cut(s) | 1829, 2033 |
| BssECI | CCNNGG | 4 cut(s) | 127, 195, 650, 2023 |
| BssNI | GRCGYC | 1 cut(s) | 132 |
| BssT1I | CCWWGG | 2 cut(s) | 650, 2023 |
| Bst4CI | ACNGT | 7 cut(s) | 514, 868, 991, 1030, 1987, 2070, 2231 |
| Bst6I | CTCTTC | 2 cut(s) | 852, 1329 |
| BstACI | GRCGYC | 1 cut(s) | 132 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1766 |
| BstAUI | TGTACA | 1 cut(s) | 1987 |
| BstBAI | YACGTR | 1 cut(s) | 1943 |
| BstC8I | GCNNGC | 8 cut(s) | 59, 179, 701, 826, 1362, 1421, 1740, 1767 |
| BstDSI | CCRYGG | 1 cut(s) | 127 |
| BstEII | GGTNACC | 1 cut(s) | 110 |
| BstF5I | GGATG | 6 cut(s) | 511, 648, 937, 1321, 1861, 1918 |
| BstFNI | CGCG | 3 cut(s) | 83, 192, 1971 |
| BstH2I | RGCGCY | 1 cut(s) | 135 |
| BstHHI | GCGC | 4 cut(s) | 85, 134, 194, 2430 |
| BstMAI | GTCTC | 4 cut(s) | 335, 461, 729, 1976 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 89, 249, 258, 392, 446, 458, 578, 1139, 1766 |
| BstNSI | RCATGY | 3 cut(s) | 38, 181, 1001 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1629 |
| BstPI | GGTNACC | 1 cut(s) | 110 |
| BstSCI | CCNGG | 1 cut(s) | 106 |
| BstSFI | CTRYAG | 4 cut(s) | 262, 450, 513, 1114 |
| BstSLI | GKGCMC | 1 cut(s) | 1795 |
| BstUI | CGCG | 3 cut(s) | 83, 192, 1971 |
| BstV2I | GAAGAC | 3 cut(s) | 1629, 1726, 2178 |
| BstX2I | RGATCY | 3 cut(s) | 103, 646, 1603 |
| BstYI | RGATCY | 3 cut(s) | 103, 646, 1603 |
| Bsu15I | ATCGAT | 3 cut(s) | 276, 754, 813 |
| Bsu36I | CCTNAGG | 1 cut(s) | 87 |
| BsuI | GTATCC | 1 cut(s) | 2343 |
| BsuRI | GGCC | 4 cut(s) | 828, 1107, 1170, 1828 |
| BsuTUI | ATCGAT | 3 cut(s) | 276, 754, 813 |
| BtgI | CCRYGG | 1 cut(s) | 127 |
| BtgZI | GCGATG | 4 cut(s) | 267, 303, 1193, 2189 |
| BtsCI | GGATG | 6 cut(s) | 511, 648, 937, 1321, 1861, 1918 |
| BtsI | GCAGTG | 1 cut(s) | 881 |
| BtsIMutI | CAGTG | 6 cut(s) | 50, 125, 428, 881, 2040, 2061 |
| BtuMI | TCGCGA | 1 cut(s) | 1971 |
| Cac8I | GCNNGC | 8 cut(s) | 59, 179, 701, 826, 1362, 1421, 1740, 1767 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1985 |
| CfoI | GCGC | 4 cut(s) | 85, 134, 194, 2430 |
| Cfr13I | GGNCC | 2 cut(s) | 827, 1871 |
| ClaI | ATCGAT | 3 cut(s) | 276, 754, 813 |
| CseI | GACGC | 3 cut(s) | 145, 960, 1293 |
| Csp6I | GTAC | 6 cut(s) | 268, 488, 1087, 1664, 1988, 2326 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 498, 533, 973, 1008 |
| CviQI | GTAC | 6 cut(s) | 268, 488, 1087, 1664, 1988, 2326 |
| DinI | GGCGCC | 1 cut(s) | 133 |
| EaeI | YGGCCR | 1 cut(s) | 1168 |
| Eam1104I | CTCTTC | 2 cut(s) | 852, 1329 |
| EarI | CTCTTC | 2 cut(s) | 852, 1329 |
| EciI | GGCGGA | 2 cut(s) | 161, 1406 |
| Eco130I | CCWWGG | 2 cut(s) | 650, 2023 |
| Eco32I | GATATC | 2 cut(s) | 361, 1543 |
| Eco47I | GGWCC | 1 cut(s) | 1871 |
| Eco57I | CTGAAG | 2 cut(s) | 876, 1892 |
| Eco72I | CACGTG | 1 cut(s) | 1943 |
| Eco81I | CCTNAGG | 1 cut(s) | 87 |
| Eco88I | CYCGRG | 1 cut(s) | 2162 |
| Eco91I | GGTNACC | 1 cut(s) | 110 |
| EcoO65I | GGTNACC | 1 cut(s) | 110 |
| EcoRV | GATATC | 2 cut(s) | 361, 1543 |
| EcoT14I | CCWWGG | 2 cut(s) | 650, 2023 |
| EgeI | GGCGCC | 1 cut(s) | 133 |
| EheI | GGCGCC | 1 cut(s) | 133 |
| ErhI | CCWWGG | 2 cut(s) | 650, 2023 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 771, 803 |
| FauI | CCCGC | 1 cut(s) | 2127 |
| FauNDI | CATATG | 2 cut(s) | 838, 1798 |
| FbaI | TGATCA | 1 cut(s) | 934 |
| FblI | GTMKAC | 2 cut(s) | 2178, 2274 |
| FokI | GGATG | 6 cut(s) | 518, 655, 924, 1328, 1848, 1925 |
| FspBI | CTAG | 3 cut(s) | 651, 876, 930 |
| GlaI | GCGC | 4 cut(s) | 84, 133, 193, 2429 |
| GsaI | CCCAGC | 1 cut(s) | 399 |
| GsuI | CTGGAG | 2 cut(s) | 993, 2228 |
| HaeII | RGCGCY | 1 cut(s) | 135 |
| HaeIII | GGCC | 4 cut(s) | 828, 1107, 1170, 1828 |
| HapII | CCGG | 5 cut(s) | 97, 108, 392, 1549, 2382 |
| HgaI | GACGC | 3 cut(s) | 145, 960, 1293 |
| HhaI | GCGC | 4 cut(s) | 85, 134, 194, 2430 |
| Hin1I | GRCGYC | 1 cut(s) | 132 |
| Hin6I | GCGC | 4 cut(s) | 83, 132, 192, 2428 |
| HinP1I | GCGC | 4 cut(s) | 83, 132, 192, 2428 |
| HincII | GTYRAC | 1 cut(s) | 1033 |
| HindII | GTYRAC | 1 cut(s) | 1033 |
| HinfI | GANTC | 9 cut(s) | 77, 278, 1454, 1493, 1570, 1949, 2239, 2371, 2385 |
| HpaII | CCGG | 5 cut(s) | 97, 108, 392, 1549, 2382 |
| HphI | GGTGA | 3 cut(s) | 104, 1159, 2039 |
| Hpy166II | GTNNAC | 7 cut(s) | 984, 1033, 1196, 1793, 2030, 2179, 2275 |
| Hpy8I | GTNNAC | 7 cut(s) | 984, 1033, 1196, 1793, 2030, 2179, 2275 |
| Hpy99I | CGWCG | 1 cut(s) | 146 |
| HpyAV | CCTTC | 8 cut(s) | 145, 339, 418, 474, 1743, 1798, 2032, 2125 |
| HpyCH4III | ACNGT | 7 cut(s) | 514, 868, 991, 1030, 1987, 2070, 2231 |
| HpyCH4IV | ACGT | 4 cut(s) | 144, 1345, 1501, 1942 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 89, 249, 258, 392, 446, 458, 578, 1139, 1766 |
| HpySE526I | ACGT | 4 cut(s) | 144, 1345, 1501, 1942 |
| Hsp92I | GRCGYC | 1 cut(s) | 132 |
| HspAI | GCGC | 4 cut(s) | 83, 132, 192, 2428 |
| KasI | GGCGCC | 1 cut(s) | 131 |
| Ksp22I | TGATCA | 1 cut(s) | 934 |
| LmnI | GCTCC | 3 cut(s) | 186, 520, 1012 |
| LweI | GCATC | 3 cut(s) | 376, 496, 1216 |
| MaeI | CTAG | 3 cut(s) | 651, 876, 930 |
| MaeII | ACGT | 4 cut(s) | 144, 1345, 1501, 1942 |
| MaeIII | GTNAC | 3 cut(s) | 110, 879, 2190 |
| MfeI | CAATTG | 2 cut(s) | 1081, 1134 |
| MflI | RGATCY | 3 cut(s) | 103, 646, 1603 |
| MhlI | GDGCHC | 2 cut(s) | 1674, 1795 |
| MlsI | TGGCCA | 1 cut(s) | 1170 |
| MluNI | TGGCCA | 1 cut(s) | 1170 |
| Mly113I | GGCGCC | 1 cut(s) | 132 |
| MlyI | GAGTC | 2 cut(s) | 86, 1487 |
| MmeI | TCCRAC | 1 cut(s) | 940 |
| Mox20I | TGGCCA | 1 cut(s) | 1170 |
| MroXI | GAANNNNTTC | 2 cut(s) | 297, 1255 |
| MscI | TGGCCA | 1 cut(s) | 1170 |
| MseI | TTAA | 2 cut(s) | 680, 1329 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1212, 1677, 1818 |
| Msp20I | TGGCCA | 1 cut(s) | 1170 |
| MspA1I | CMGCKG | 2 cut(s) | 1775, 1853 |
| MspI | CCGG | 5 cut(s) | 97, 108, 392, 1549, 2382 |
| MspR9I | CCNGG | 1 cut(s) | 108 |
| MunI | CAATTG | 2 cut(s) | 1081, 1134 |
| Mva1269I | GAATGC | 1 cut(s) | 571 |
| MvnI | CGCG | 3 cut(s) | 83, 192, 1971 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 89, 249, 258, 392, 446, 458, 578, 1139, 1766 |
| NarI | GGCGCC | 1 cut(s) | 132 |
| NciI | CCSGG | 1 cut(s) | 108 |
| NdeI | CATATG | 2 cut(s) | 838, 1798 |
| NmeAIII | GCCGAG | 1 cut(s) | 220 |
| NmuCI | GTSAC | 3 cut(s) | 110, 879, 2190 |
| NruI | TCGCGA | 1 cut(s) | 1971 |
| NspI | RCATGY | 3 cut(s) | 38, 181, 1001 |
| PaeI | GCATGC | 1 cut(s) | 181 |
| PaeR7I | CTCGAG | 1 cut(s) | 2162 |
| PctI | GAATGC | 1 cut(s) | 571 |
| PdmI | GAANNNNTTC | 2 cut(s) | 297, 1255 |
| PfeI | GAWTC | 7 cut(s) | 278, 1454, 1570, 1949, 2239, 2371, 2385 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1756, 2284 |
| PleI | GAGTC | 2 cut(s) | 85, 1487 |
| PluTI | GGCGCC | 1 cut(s) | 135 |
| PmaCI | CACGTG | 1 cut(s) | 1943 |
| PmlI | CACGTG | 1 cut(s) | 1943 |
| PpsI | GAGTC | 2 cut(s) | 85, 1487 |
| Ppu21I | YACGTR | 1 cut(s) | 1943 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1629 |
| PsiI | TTATAA | 1 cut(s) | 381 |
| Psp1406I | AACGTT | 1 cut(s) | 1345 |
| PspCI | CACGTG | 1 cut(s) | 1943 |
| PspEI | GGTNACC | 1 cut(s) | 110 |
| PspFI | CCCAGC | 1 cut(s) | 395 |
| PspPI | GGNCC | 2 cut(s) | 827, 1871 |
| PspXI | VCTCGAGB | 1 cut(s) | 2162 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2265, 2297 |
| PstI | CTGCAG | 1 cut(s) | 454 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1985 |
| PsuI | RGATCY | 3 cut(s) | 103, 646, 1603 |
| PvuII | CAGCTG | 1 cut(s) | 1853 |
| RruI | TCGCGA | 1 cut(s) | 1971 |
| RsaI | GTAC | 6 cut(s) | 269, 489, 1088, 1665, 1989, 2327 |
| RsaNI | GTAC | 6 cut(s) | 268, 488, 1087, 1664, 1988, 2326 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1212, 1677, 1818 |
| SaqAI | TTAA | 2 cut(s) | 680, 1329 |
| Sau96I | GGNCC | 2 cut(s) | 827, 1871 |
| SchI | GAGTC | 2 cut(s) | 86, 1487 |
| ScrFI | CCNGG | 1 cut(s) | 108 |
| SduI | GDGCHC | 2 cut(s) | 1674, 1795 |
| SfaNI | GCATC | 3 cut(s) | 376, 496, 1216 |
| SfcI | CTRYAG | 4 cut(s) | 262, 450, 513, 1114 |
| SfoI | GGCGCC | 1 cut(s) | 133 |
| Sfr274I | CTCGAG | 1 cut(s) | 2162 |
| SinI | GGWCC | 1 cut(s) | 1871 |
| SlaI | CTCGAG | 1 cut(s) | 2162 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1212, 1677, 1818 |
| SmlI | CTYRAG | 6 cut(s) | 338, 419, 777, 1667, 1890, 2162 |
| SmoI | CTYRAG | 6 cut(s) | 338, 419, 777, 1667, 1890, 2162 |
| SphI | GCATGC | 1 cut(s) | 181 |
| SsiI | CCGC | 7 cut(s) | 81, 172, 175, 1417, 1773, 2001, 2120 |
| SspDI | GGCGCC | 1 cut(s) | 131 |
| SspI | AATATT | 4 cut(s) | 30, 615, 1126, 2256 |
| SspMI | CTAG | 3 cut(s) | 651, 876, 930 |
| StyD4I | CCNGG | 1 cut(s) | 106 |
| StyI | CCWWGG | 2 cut(s) | 650, 2023 |
| TaaI | ACNGT | 7 cut(s) | 514, 868, 991, 1030, 1987, 2070, 2231 |
| TaiI | ACGT | 4 cut(s) | 147, 1348, 1504, 1945 |
| TaqI | TCGA | 9 cut(s) | 19, 148, 219, 276, 357, 363, 754, 813, 2163 |
| TatI | WGTACW | 3 cut(s) | 1663, 1987, 2325 |
| TauI | GCSGC | 2 cut(s) | 177, 2003 |
| TfiI | GAWTC | 7 cut(s) | 278, 1454, 1570, 1949, 2239, 2371, 2385 |
| Tru1I | TTAA | 2 cut(s) | 680, 1329 |
| Tru9I | TTAA | 2 cut(s) | 680, 1329 |
| TscAI | CASTG | 6 cut(s) | 57, 125, 435, 888, 2040, 2068 |
| TseFI | GTSAC | 3 cut(s) | 110, 879, 2190 |
| Tsp45I | GTSAC | 3 cut(s) | 110, 879, 2190 |
| TspDTI | ATGAA | 9 cut(s) | 513, 734, 1151, 1191, 1286, 1836, 2139, 2321, 2377 |
| TspGWI | ACGGA | 2 cut(s) | 1854, 1949 |
| TspRI | CASTG | 6 cut(s) | 57, 125, 435, 888, 2040, 2068 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1756, 2284 |
| VneI | GTGCAC | 1 cut(s) | 1791 |
| VpaK11BI | GGWCC | 1 cut(s) | 1871 |
| XapI | RAATTY | 5 cut(s) | 600, 1406, 1444, 1902, 1965 |
| XceI | RCATGY | 3 cut(s) | 38, 181, 1001 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1309, 1836 |
| XhoI | CTCGAG | 1 cut(s) | 2162 |
| XmaJI | CCTAGG | 1 cut(s) | 650 |
| XmiI | GTMKAC | 2 cut(s) | 2178, 2274 |
| XmnI | GAANNNNTTC | 2 cut(s) | 297, 1255 |
| XspI | CTAG | 3 cut(s) | 651, 876, 930 |