Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013907

Physical Location & Seq

Genomic Coordinates Reverse (-)

9354241 .. 9355326

Gene Structure 1086 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G16610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGCAGAACAAACACAAATGCAAGCTCTGTTCCAAGAGTTTCTGTAATGGCAGAGCACTTGGTGGTCACATGAAGTCTCACTTGGTCTCATCTCAGTCTTCAGCTCGGAAGAAACTAGGTGACTCGGTCTATTCTTCTTCTTCCTCTTCCTCCGATGGTAAAGCGCTCGCCTACGGGTTACGAGAGAACCCGAGGAAGAGTTTCCGGGTCTTTAATCCGGATCCTGAGTCATCCACAATTTACAACAGTGAGACAGAGACCGAACCTGAATCCGGAGACCCGGTTAAGAAACGGGTCAGAGGAGATGTTTCAAAGAAGAAGAAGAAGAAGGCAAAGAGTAAGAGAGTGTTTGAGAACTCGAAGAAGCAAAAGACAATTCACGAGTCACCAGAACCAGCGAGTTCTGTCTCTGATGGTTCTCCTGAACAAGATTTAGCTATGTGCTTGATGATGCTGTCAAGAGATTCAAGGGAGCTCGAGATTAAACTGAAAAAACCGGAGGAAGAGAGGAAGCCGGAAAAAAGACATTTCCCTGAGCTCCGTCGCTGTATGATAGATCTGAATCTTCCTCCGCCGCAAGAAGCTGAAGCTGTCACCGTCGTTTCAGCCATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

204

Amino Acids

22.84

Weight (kDa)

9.56

Isoelectric Point (pI)

67.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	5 - 27	6.2e-06	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013907)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16610
fragaria_vesca	FvH4_5g19030
malus_domestica	MD04G1063600.v1.1 MD06G1057700.v1.1
prunus_persica	Prupe.5G068600_v2.0.a1
pyrus_communis	pycom04g05740 pycom06g04850
rosa_chinensis	RchiOBHm_Chr7g0203441
rosa_laevigata	RLG00000003528
rosa_multiflora	Rmu_ssc0000485.1_g000001
rosa_roxburghii	Rroxscaffold_3G00253810
rosa_rugosa	Rorug07G0076000
rosa_samantha	Rh7AG205600 Rh7BG205400 Rh7CG218300 Rh7DG212700
rosa_wichuraiana	Rw7G017960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	2 cut(s)	217, 272
AciI	CCGC	2 cut(s)	572, 575
AclWI	GGATC	2 cut(s)	215, 228
AcuI	CTGAAG	2 cut(s)	84, 606
AdeI	CACNNNGTG	1 cut(s)	62
AfeI	AGCGCT	1 cut(s)	165
AfiI	CCNNNNNNNGG	1 cut(s)	272
AgsI	TTSAA	2 cut(s)	312, 468
AjuI	GAANNNNNNNTTGG	2 cut(s)	65, 97
AluBI	AGCT	7 cut(s)	25, 104, 437, 475, 538, 584, 590
AluI	AGCT	7 cut(s)	25, 104, 437, 475, 538, 584, 590
Alw21I	GWGCWC	3 cut(s)	58, 477, 540
Alw26I	GTCTC	6 cut(s)	81, 91, 245, 251, 270, 412
AlwI	GGATC	2 cut(s)	215, 228
Ama87I	CYCGRG	2 cut(s)	190, 476
Aor13HI	TCCGGA	2 cut(s)	217, 272
Aor51HI	AGCGCT	1 cut(s)	165
Asp700I	GAANNNNTTC	1 cut(s)	200
AspLEI	GCGC	1 cut(s)	166
AsuC2I	CCSGG	2 cut(s)	206, 281
AsuHPI	GGTGA	3 cut(s)	131, 378, 586
AvaI	CYCGRG	2 cut(s)	190, 476
BamHI	GGATCC	1 cut(s)	220
BanII	GRGCYC	2 cut(s)	477, 540
BauI	CACGAG	1 cut(s)	380
BbsI	GAAGAC	1 cut(s)	90
Bbv12I	GWGCWC	3 cut(s)	58, 477, 540
BccI	CCATC	2 cut(s)	149, 407
BcnI	CCSGG	2 cut(s)	206, 281
BcoDI	GTCTC	6 cut(s)	81, 91, 245, 251, 270, 412
BfaI	CTAG	1 cut(s)	116
BfoI	RGCGCY	1 cut(s)	167
BglII	AGATCT	1 cut(s)	556
BisI	GCNGC	1 cut(s)	575
BlsI	GCNGC	1 cut(s)	576
Bme1390I	CCNGG	2 cut(s)	206, 281
BmeT110I	CYCGRG	2 cut(s)	190, 476
BmiI	GGNNCC	1 cut(s)	222
BmrFI	CCNGG	2 cut(s)	206, 281
BmsI	GCATC	1 cut(s)	441
BpiI	GAAGAC	1 cut(s)	90
Bpu10I	CCTNAGC	1 cut(s)	534
BpuMI	CCSGG	2 cut(s)	206, 281
BsaBI	GATNNNNATC	1 cut(s)	561
BsaI	GGTCTC	3 cut(s)	91, 251, 270
BsaJI	CCNNGG	1 cut(s)	191
BsaWI	WCCGGW	3 cut(s)	217, 272, 496
BsaXI	ACNNNNNCTCC	2 cut(s)	267, 297
Bsc4I	CCNNNNNNNGG	1 cut(s)	272
Bse8I	GATNNNNATC	1 cut(s)	561
BseAI	TCCGGA	2 cut(s)	217, 272
BseDI	CCNNGG	1 cut(s)	191
BseGI	GGATG	1 cut(s)	230
BseJI	GATNNNNATC	1 cut(s)	561
BseLI	CCNNNNNNNGG	1 cut(s)	272
BseMII	CTCAG	3 cut(s)	107, 216, 525
BseRI	GAGGAG	1 cut(s)	315
BsiHKAI	GWGCWC	3 cut(s)	58, 477, 540
BsiHKCI	CYCGRG	2 cut(s)	190, 476
BsiSI	CCGG	6 cut(s)	205, 218, 273, 281, 497, 515
BslI	CCNNNNNNNGG	1 cut(s)	272
BsmAI	GTCTC	6 cut(s)	81, 91, 245, 251, 270, 412
Bso31I	GGTCTC	3 cut(s)	91, 251, 270
BsoBI	CYCGRG	2 cut(s)	190, 476
Bsp1286I	GDGCHC	3 cut(s)	58, 477, 540
Bsp13I	TCCGGA	2 cut(s)	217, 272
Bsp143I	GATC	2 cut(s)	220, 556
BspACI	CCGC	2 cut(s)	572, 575
BspCNI	CTCAG	3 cut(s)	106, 217, 526
BspEI	TCCGGA	2 cut(s)	217, 272
BspLI	GGNNCC	1 cut(s)	222
BspPI	GGATC	2 cut(s)	215, 228
BspTNI	GGTCTC	3 cut(s)	91, 251, 270
BssECI	CCNNGG	1 cut(s)	191
BssMI	GATC	2 cut(s)	220, 556
BssSI	CACGAG	1 cut(s)	380
Bst2BI	CACGAG	1 cut(s)	380
Bst4CI	ACNGT	2 cut(s)	248, 598
Bst6I	CTCTTC	3 cut(s)	151, 191, 498
BstC8I	GCNNGC	2 cut(s)	23, 168
BstDEI	CTNAG	3 cut(s)	93, 225, 534
BstF5I	GGATG	1 cut(s)	230
BstH2I	RGCGCY	1 cut(s)	167
BstHHI	GCGC	1 cut(s)	166
BstKTI	GATC	2 cut(s)	223, 559
BstMAI	GTCTC	6 cut(s)	81, 91, 245, 251, 270, 412
BstMBI	GATC	2 cut(s)	220, 556
BstSCI	CCNGG	2 cut(s)	204, 279
BstV2I	GAAGAC	1 cut(s)	90
BstX2I	RGATCY	2 cut(s)	220, 556
BstYI	RGATCY	2 cut(s)	220, 556
BtsCI	GGATG	1 cut(s)	230
BtsIMutI	CAGTG	1 cut(s)	253
Cac8I	GCNNGC	2 cut(s)	23, 168
CfoI	GCGC	1 cut(s)	166
CviAII	CATG	1 cut(s)	70
CviJI	RGCY	9 cut(s)	25, 104, 437, 475, 514, 538, 584, 590, 608
CviKI_1	RGCY	9 cut(s)	25, 104, 437, 475, 514, 538, 584, 590, 608
DdeI	CTNAG	3 cut(s)	93, 225, 534
DpnI	GATC	2 cut(s)	222, 558
DpnII	GATC	2 cut(s)	220, 556
DraIII	CACNNNGTG	1 cut(s)	62
Eam1104I	CTCTTC	3 cut(s)	151, 191, 498
EarI	CTCTTC	3 cut(s)	151, 191, 498
EciI	GGCGGA	1 cut(s)	561
Ecl136II	GAGCTC	2 cut(s)	475, 538
Eco24I	GRGCYC	2 cut(s)	477, 540
Eco31I	GGTCTC	3 cut(s)	91, 251, 270
Eco47III	AGCGCT	1 cut(s)	165
Eco53kI	GAGCTC	2 cut(s)	475, 538
Eco57I	CTGAAG	2 cut(s)	84, 606
Eco88I	CYCGRG	2 cut(s)	190, 476
EcoICRI	GAGCTC	2 cut(s)	475, 538
EcoT38I	GRGCYC	2 cut(s)	477, 540
FaeI	CATG	1 cut(s)	73
FaiI	YATR	5 cut(s)	71, 440, 551, 611, 613
FalI	AAGNNNNNCTT	2 cut(s)	65, 97
FatI	CATG	1 cut(s)	69
Fnu4HI	GCNGC	1 cut(s)	575
FokI	GGATG	1 cut(s)	217
FriOI	GRGCYC	2 cut(s)	477, 540
Fsp4HI	GCNGC	1 cut(s)	575
FspBI	CTAG	1 cut(s)	116
GlaI	GCGC	1 cut(s)	165
GluI	GCNGC	1 cut(s)	575
HaeII	RGCGCY	1 cut(s)	167
HapII	CCGG	6 cut(s)	205, 218, 273, 281, 497, 515
HhaI	GCGC	1 cut(s)	166
Hin1II	CATG	1 cut(s)	73
Hin6I	GCGC	1 cut(s)	164
HinP1I	GCGC	1 cut(s)	164
HinfI	GANTC	6 cut(s)	122, 227, 269, 383, 464, 562
HpaII	CCGG	6 cut(s)	205, 218, 273, 281, 497, 515
HphI	GGTGA	3 cut(s)	131, 378, 586
Hpy188I	TCNGA	5 cut(s)	108, 154, 299, 412, 561
Hpy188III	TCNNGA	7 cut(s)	218, 224, 273, 380, 422, 459, 478
Hpy99I	CGWCG	2 cut(s)	546, 602
HpyAV	CCTTC	1 cut(s)	322
HpyCH4III	ACNGT	2 cut(s)	248, 598
HpyCH4V	TGCA	2 cut(s)	4, 21
HpyF3I	CTNAG	3 cut(s)	93, 225, 534
Hsp92II	CATG	1 cut(s)	73
HspAI	GCGC	1 cut(s)	164
Kpn2I	TCCGGA	2 cut(s)	217, 272
Kzo9I	GATC	2 cut(s)	220, 556
LmnI	GCTCC	2 cut(s)	472, 543
LweI	GCATC	1 cut(s)	441
MaeI	CTAG	1 cut(s)	116
MaeIII	GTNAC	5 cut(s)	65, 119, 177, 384, 592
MalI	GATC	2 cut(s)	222, 558
MboI	GATC	2 cut(s)	220, 556
MflI	RGATCY	2 cut(s)	220, 556
MhlI	GDGCHC	3 cut(s)	58, 477, 540
MluCI	AATT	2 cut(s)	237, 375
MlyI	GAGTC	3 cut(s)	116, 236, 392
MnlI	CCTC	7 cut(s)	154, 160, 186, 293, 493, 501, 579
MroI	TCCGGA	2 cut(s)	217, 272
MroXI	GAANNNNTTC	1 cut(s)	200
MseI	TTAA	3 cut(s)	213, 285, 483
MspI	CCGG	6 cut(s)	205, 218, 273, 281, 497, 515
MspR9I	CCNGG	2 cut(s)	206, 281
NciI	CCSGG	2 cut(s)	206, 281
NdeII	GATC	2 cut(s)	220, 556
NlaIII	CATG	1 cut(s)	73
NlaIV	GGNNCC	1 cut(s)	222
NmuCI	GTSAC	4 cut(s)	65, 119, 384, 592
PaeR7I	CTCGAG	1 cut(s)	476
PdmI	GAANNNNTTC	1 cut(s)	200
PfeI	GAWTC	3 cut(s)	269, 464, 562
PflFI	GACNNNGTC	1 cut(s)	125
PkrI	GCNGC	1 cut(s)	576
PleI	GAGTC	3 cut(s)	116, 235, 391
PpsI	GAGTC	3 cut(s)	116, 235, 391
Psp124BI	GAGCTC	2 cut(s)	477, 540
PspN4I	GGNNCC	1 cut(s)	222
PsuI	RGATCY	2 cut(s)	220, 556
PsyI	GACNNNGTC	1 cut(s)	125
SacI	GAGCTC	2 cut(s)	477, 540
SaqAI	TTAA	3 cut(s)	213, 285, 483
SatI	GCNGC	1 cut(s)	575
Sau3AI	GATC	2 cut(s)	220, 556
SchI	GAGTC	3 cut(s)	116, 236, 392
ScrFI	CCNGG	2 cut(s)	206, 281
SduI	GDGCHC	3 cut(s)	58, 477, 540
SetI	ASST	9 cut(s)	27, 106, 121, 268, 439, 477, 540, 586, 592
SfaNI	GCATC	1 cut(s)	441
Sfr274I	CTCGAG	1 cut(s)	476
SlaI	CTCGAG	1 cut(s)	476
SmlI	CTYRAG	1 cut(s)	476
SmoI	CTYRAG	1 cut(s)	476
Sse9I	AATT	2 cut(s)	237, 375
SsiI	CCGC	2 cut(s)	572, 575
SspMI	CTAG	1 cut(s)	116
SstI	GAGCTC	2 cut(s)	477, 540
StyD4I	CCNGG	2 cut(s)	204, 279
TaaI	ACNGT	2 cut(s)	248, 598
TaqI	TCGA	2 cut(s)	359, 477
TaqII	GACCGA	2 cut(s)	115, 275
TasI	AATT	2 cut(s)	237, 375
TauI	GCSGC	1 cut(s)	577
TfiI	GAWTC	3 cut(s)	269, 464, 562
Tru1I	TTAA	3 cut(s)	213, 285, 483
Tru9I	TTAA	3 cut(s)	213, 285, 483
TscAI	CASTG	1 cut(s)	253
TseFI	GTSAC	4 cut(s)	65, 119, 384, 592
Tsp45I	GTSAC	4 cut(s)	65, 119, 384, 592
TspDTI	ATGAA	1 cut(s)	86
TspGWI	ACGGA	1 cut(s)	530
TspRI	CASTG	1 cut(s)	253
Tth111I	GACNNNGTC	1 cut(s)	125
XhoI	CTCGAG	1 cut(s)	476
XmnI	GAANNNNTTC	1 cut(s)	200
XspI	CTAG	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.