Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000485.1

Orthogroup ID

OG0013907

Physical Location & Seq

Genomic Coordinates Reverse (-)

670 .. 1879

Gene Structure 1210 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000485.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

atggagaagcaccaatgcaagctctgcgctaggattttcaacaatggcagagcattgggtggtcacatgaaggctcacatggccgtccttcctctccctccaaagacccaccaacaactcgctgctgctgagtctactcactctgcctcgtcctcctcttcgtcttctgaagatgaacagcaaaagggtagtcatcaacaagaggaggaagatcagaaggctttggcttatgtgttgagggagaatcccaagaaaagtttcagacttgcagatcctgagttctcttttcaggttgatgctgggtctgtagttattcaagacagggagagcgagaccgagtcgagaaacccaactcggagacgatccaagcggaatcggaggatgagttttacagagaaattggagctgaagaaacccaagttgacaacttcaacggttgactcgccgccggccgagccggagccgttgagctcagtctccgacacttcaccggaagaggatgttgccatgtgcctcatgttgctgtcgagggatgtgtggatgagaacaaactgtggagaagcagatcaagaacaaaatgggaaagaggagttcgagcaattggaggagatcaaattgaagaaagtgagaggcaagaatcggtgtgacaaatgcagtaagctctttcgatctcatcaagcaatgtgcgtgcacagaaagatttgctttcgaagcgaagcagaggccaacaatgcagctagcagtgccagtctgttcaagtgcccattctgcagcaagatttttgggtccggacaagctcttgggggtcacaaaaggtctcatctttctggcactgcgggttactcgagagtcgtcacaaaagttacagaagttcgggagagtttcatagatctcaacatgcctgctccacaagaagaagataatttcagtgttgtttccgatgcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

315

Amino Acids

35.21

Weight (kDa)

8.01

Isoelectric Point (pI)

59.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013907)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16610
fragaria_vesca	FvH4_5g19030
malus_domestica	MD04G1063600.v1.1 MD06G1057700.v1.1
prunus_persica	Prupe.5G068600_v2.0.a1
pyrus_communis	pycom04g05740 pycom06g04850
rosa_chinensis	RchiOBHm_Chr7g0203441
rosa_laevigata	RLG00000003528
rosa_multiflora	Rmu_ssc0000485.1_g000001
rosa_roxburghii	Rroxscaffold_3G00253810
rosa_rugosa	Rorug07G0076000
rosa_samantha	Rh7AG205600 Rh7BG205400 Rh7CG218300 Rh7DG212700
rosa_wichuraiana	Rw7G017960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	134
AccIII	TCCGGA	1 cut(s)	788
AciI	CCGC	3 cut(s)	370, 446, 836
AclWI	GGATC	2 cut(s)	266, 357
AcoI	YGGCCR	2 cut(s)	81, 450
AcuI	CTGAAG	2 cut(s)	189, 428
AgsI	TTSAA	5 cut(s)	40, 317, 432, 619, 757
AjuI	GAANNNNNNNTTGG	2 cut(s)	242, 274
AluBI	AGCT	6 cut(s)	22, 406, 471, 661, 737, 797
AluI	AGCT	6 cut(s)	22, 406, 471, 661, 737, 797
Alw21I	GWGCWC	2 cut(s)	473, 693
Alw26I	GTCTC	4 cut(s)	326, 352, 481, 822
Alw44I	GTGCAC	1 cut(s)	689
AlwI	GGATC	2 cut(s)	266, 357
AlwNI	CAGNNNCTG	1 cut(s)	275
Ama87I	CYCGRG	1 cut(s)	844
Aor13HI	TCCGGA	1 cut(s)	788
AoxI	GGCC	3 cut(s)	81, 450, 723
ApaLI	GTGCAC	1 cut(s)	689
ApeKI	GCWGC	4 cut(s)	122, 125, 734, 771
ArsI	GACNNNNNNTTYG	2 cut(s)	175, 207
Asp700I	GAANNNNTTC	1 cut(s)	257
AspLEI	GCGC	1 cut(s)	29
AspS9I	GGNCC	1 cut(s)	786
AsuHPI	GGTGA	1 cut(s)	480
AsuII	TTCGAA	1 cut(s)	709
AsuNHI	GCTAGC	1 cut(s)	737
AvaI	CYCGRG	1 cut(s)	844
AvaII	GGWCC	1 cut(s)	786
BaeGI	GKGCMC	2 cut(s)	693, 764
BanII	GRGCYC	1 cut(s)	473
BbsI	GAAGAC	1 cut(s)	156
Bbv12I	GWGCWC	2 cut(s)	473, 693
BbvI	GCAGC	4 cut(s)	109, 112, 746, 783
BceAI	ACGGC	2 cut(s)	68, 448
BcoDI	GTCTC	4 cut(s)	326, 352, 481, 822
BfaI	CTAG	2 cut(s)	30, 738
BfmI	CTRYAG	2 cut(s)	306, 769
BglII	AGATCT	1 cut(s)	889
BisI	GCNGC	5 cut(s)	123, 126, 446, 735, 772
BlsI	GCNGC	5 cut(s)	124, 127, 447, 736, 773
Bme18I	GGWCC	1 cut(s)	786
BmeT110I	CYCGRG	1 cut(s)	844
BmgT120I	GGNCC	1 cut(s)	786
BmiI	GGNNCC	2 cut(s)	462, 787
BmsI	GCATC	2 cut(s)	286, 931
BmtI	GCTAGC	1 cut(s)	741
BpiI	GAAGAC	1 cut(s)	156
Bpu14I	TTCGAA	1 cut(s)	709
BsaI	GGTCTC	2 cut(s)	326, 822
BsaWI	WCCGGW	2 cut(s)	490, 788
BsaXI	ACNNNNNCTCC	2 cut(s)	370, 400
Bse118I	RCCGGY	1 cut(s)	448
Bse1I	ACTGG	1 cut(s)	747
Bse3DI	GCAATG	1 cut(s)	687
BseAI	TCCGGA	1 cut(s)	788
BseGI	GGATG	4 cut(s)	387, 505, 538, 546
BseMI	GCAATG	1 cut(s)	687
BseMII	CTCAG	3 cut(s)	120, 267, 486
BseNI	ACTGG	1 cut(s)	747
BseRI	GAGGAG	4 cut(s)	145, 218, 602, 620
BseSI	GKGCMC	2 cut(s)	693, 764
BseX3I	CGGCCG	1 cut(s)	450
BseXI	GCAGC	4 cut(s)	109, 112, 746, 783
BseYI	CCCAGC	1 cut(s)	299
Bsh1285I	CGRYCG	1 cut(s)	453
BshFI	GGCC	3 cut(s)	83, 452, 725
BsiEI	CGRYCG	1 cut(s)	453
BsiHKAI	GWGCWC	2 cut(s)	473, 693
BsiHKCI	CYCGRG	1 cut(s)	844
BsiSI	CCGG	4 cut(s)	449, 458, 491, 789
BsmAI	GTCTC	4 cut(s)	326, 352, 481, 822
BsmBI	CGTCTC	1 cut(s)	352
BsnI	GGCC	3 cut(s)	83, 452, 725
Bso31I	GGTCTC	2 cut(s)	326, 822
BsoBI	CYCGRG	1 cut(s)	844
Bsp119I	TTCGAA	1 cut(s)	709
Bsp1286I	GDGCHC	3 cut(s)	473, 693, 764
Bsp13I	TCCGGA	1 cut(s)	788
Bsp143I	GATC	7 cut(s)	211, 271, 362, 565, 609, 668, 889
BspACI	CCGC	3 cut(s)	370, 446, 836
BspANI	GGCC	3 cut(s)	83, 452, 725
BspCNI	CTCAG	3 cut(s)	121, 268, 485
BspEI	TCCGGA	1 cut(s)	788
BspLI	GGNNCC	2 cut(s)	462, 787
BspMAI	CTGCAG	1 cut(s)	773
BspOI	GCTAGC	1 cut(s)	741
BspPI	GGATC	2 cut(s)	266, 357
BspT104I	TTCGAA	1 cut(s)	709
BspTNI	GGTCTC	2 cut(s)	326, 822
BsrDI	GCAATG	1 cut(s)	687
BsrFI	RCCGGY	1 cut(s)	448
BsrI	ACTGG	1 cut(s)	747
BssAI	RCCGGY	1 cut(s)	448
BssMI	GATC	7 cut(s)	211, 271, 362, 565, 609, 668, 889
Bst4CI	ACNGT	2 cut(s)	436, 554
Bst6I	CTCTTC	2 cut(s)	163, 489
BstAPI	GCANNNNNTGC	1 cut(s)	24
BstBI	TTCGAA	1 cut(s)	709
BstC8I	GCNNGC	5 cut(s)	20, 450, 689, 739, 903
BstDEI	CTNAG	4 cut(s)	129, 276, 472, 945
BstF5I	GGATG	4 cut(s)	387, 505, 538, 546
BstHHI	GCGC	1 cut(s)	29
BstKTI	GATC	7 cut(s)	214, 274, 365, 568, 612, 671, 892
BstMAI	GTCTC	4 cut(s)	326, 352, 481, 822
BstMBI	GATC	7 cut(s)	211, 271, 362, 565, 609, 668, 889
BstMCI	CGRYCG	1 cut(s)	453
BstMWI	GCNNNNNNNGC	7 cut(s)	24, 80, 454, 711, 731, 743, 768
BstNSI	RCATGY	1 cut(s)	901
BstSFI	CTRYAG	2 cut(s)	306, 769
BstSLI	GKGCMC	2 cut(s)	693, 764
BstV1I	GCAGC	4 cut(s)	109, 112, 746, 783
BstV2I	GAAGAC	1 cut(s)	156
BstX2I	RGATCY	2 cut(s)	271, 889
BstYI	RGATCY	2 cut(s)	271, 889
BstZI	CGGCCG	1 cut(s)	450
BsuRI	GGCC	3 cut(s)	83, 452, 725
BtsCI	GGATG	4 cut(s)	387, 505, 538, 546
BtsI	GCAGTG	2 cut(s)	748, 831
BtsIMutI	CAGTG	3 cut(s)	748, 831, 934
Cac8I	GCNNGC	5 cut(s)	20, 450, 689, 739, 903
CaiI	CAGNNNCTG	1 cut(s)	275
CfoI	GCGC	1 cut(s)	29
Cfr10I	RCCGGY	1 cut(s)	448
Cfr13I	GGNCC	1 cut(s)	786
CviAII	CATG	5 cut(s)	67, 79, 508, 517, 898
DdeI	CTNAG	4 cut(s)	129, 276, 472, 945
DpnI	GATC	7 cut(s)	213, 273, 364, 567, 611, 670, 891
DpnII	GATC	7 cut(s)	211, 271, 362, 565, 609, 668, 889
EaeI	YGGCCR	2 cut(s)	81, 450
EagI	CGGCCG	1 cut(s)	450
Eam1104I	CTCTTC	2 cut(s)	163, 489
EarI	CTCTTC	2 cut(s)	163, 489
Ecl136II	GAGCTC	1 cut(s)	471
EclXI	CGGCCG	1 cut(s)	450
Eco24I	GRGCYC	1 cut(s)	473
Eco31I	GGTCTC	2 cut(s)	326, 822
Eco47I	GGWCC	1 cut(s)	786
Eco52I	CGGCCG	1 cut(s)	450
Eco53kI	GAGCTC	1 cut(s)	471
Eco57I	CTGAAG	2 cut(s)	189, 428
Eco88I	CYCGRG	1 cut(s)	844
EcoICRI	GAGCTC	1 cut(s)	471
EcoT38I	GRGCYC	1 cut(s)	473
Esp3I	CGTCTC	1 cut(s)	352
FaeI	CATG	5 cut(s)	70, 82, 511, 520, 901
FaiI	YATR	7 cut(s)	68, 80, 231, 509, 518, 887, 899
FalI	AAGNNNNNCTT	2 cut(s)	689, 721
FatI	CATG	5 cut(s)	66, 78, 507, 516, 897
FauI	CCCGC	1 cut(s)	829
FblI	GTMKAC	1 cut(s)	134
Fnu4HI	GCNGC	5 cut(s)	123, 126, 446, 735, 772
FokI	GGATG	4 cut(s)	394, 512, 545, 553
FriOI	GRGCYC	1 cut(s)	473
Fsp4HI	GCNGC	5 cut(s)	123, 126, 446, 735, 772
FspBI	CTAG	2 cut(s)	30, 738
GlaI	GCGC	1 cut(s)	28
GluI	GCNGC	5 cut(s)	123, 126, 446, 735, 772
GsaI	CCCAGC	1 cut(s)	303
HaeIII	GGCC	3 cut(s)	83, 452, 725
HapII	CCGG	4 cut(s)	449, 458, 491, 789
HhaI	GCGC	1 cut(s)	29
Hin1II	CATG	5 cut(s)	70, 82, 511, 520, 901
Hin6I	GCGC	1 cut(s)	27
HinP1I	GCGC	1 cut(s)	27
HincII	GTYRAC	2 cut(s)	423, 439
HindII	GTYRAC	2 cut(s)	423, 439
HinfI	GANTC	7 cut(s)	131, 244, 338, 373, 440, 637, 849
HpaII	CCGG	4 cut(s)	449, 458, 491, 789
HphI	GGTGA	1 cut(s)	480
Hpy166II	GTNNAC	4 cut(s)	135, 423, 439, 691
Hpy188I	TCNGA	7 cut(s)	169, 216, 263, 357, 378, 481, 940
Hpy188III	TCNNGA	7 cut(s)	275, 317, 342, 569, 789, 846, 875
Hpy8I	GTNNAC	4 cut(s)	135, 423, 439, 691
HpyAV	CCTTC	3 cut(s)	64, 98, 211
HpyCH4III	ACNGT	2 cut(s)	436, 554
HpyCH4V	TGCA	6 cut(s)	18, 269, 654, 691, 734, 771
HpyF10VI	GCNNNNNNNGC	7 cut(s)	24, 80, 454, 711, 731, 743, 768
HpyF3I	CTNAG	4 cut(s)	129, 276, 472, 945
Hsp92II	CATG	5 cut(s)	70, 82, 511, 520, 901
HspAI	GCGC	1 cut(s)	27
Kpn2I	TCCGGA	1 cut(s)	788
KroI	GCCGGC	1 cut(s)	448
KroNI	GCCGGC	1 cut(s)	450
Kzo9I	GATC	7 cut(s)	211, 271, 362, 565, 609, 668, 889
LmnI	GCTCC	3 cut(s)	403, 460, 910
Lsp1109I	GCAGC	4 cut(s)	109, 112, 746, 783
LweI	GCATC	2 cut(s)	286, 931
MaeI	CTAG	2 cut(s)	30, 738
MaeIII	GTNAC	6 cut(s)	62, 644, 806, 839, 853, 862
MalI	GATC	7 cut(s)	213, 273, 364, 567, 611, 670, 891
MboI	GATC	7 cut(s)	211, 271, 362, 565, 609, 668, 889
MboII	GAAGA	9 cut(s)	150, 156, 182, 221, 421, 506, 631, 926, 929
MfeI	CAATTG	1 cut(s)	599
MflI	RGATCY	2 cut(s)	271, 889
MhlI	GDGCHC	3 cut(s)	473, 693, 764
MluCI	AATT	4 cut(s)	398, 599, 614, 922
MlyI	GAGTC	4 cut(s)	140, 347, 434, 858
MmeI	TCCRAC	1 cut(s)	504
MroI	TCCGGA	1 cut(s)	788
MroNI	GCCGGC	1 cut(s)	448
MroXI	GAANNNNTTC	1 cut(s)	257
MspI	CCGG	4 cut(s)	449, 458, 491, 789
MunI	CAATTG	1 cut(s)	599
MwoI	GCNNNNNNNGC	7 cut(s)	24, 80, 454, 711, 731, 743, 768
NaeI	GCCGGC	1 cut(s)	450
NdeII	GATC	7 cut(s)	211, 271, 362, 565, 609, 668, 889
NgoMIV	GCCGGC	1 cut(s)	448
NheI	GCTAGC	1 cut(s)	737
NlaIII	CATG	5 cut(s)	70, 82, 511, 520, 901
NlaIV	GGNNCC	2 cut(s)	462, 787
NmeAIII	GCCGAG	1 cut(s)	478
NmuCI	GTSAC	4 cut(s)	62, 644, 806, 853
NspI	RCATGY	1 cut(s)	901
NspV	TTCGAA	1 cut(s)	709
PaeR7I	CTCGAG	1 cut(s)	844
PdiI	GCCGGC	1 cut(s)	450
PdmI	GAANNNNTTC	1 cut(s)	257
PfeI	GAWTC	3 cut(s)	244, 373, 637
PflFI	GACNNNGTC	1 cut(s)	337
PkrI	GCNGC	5 cut(s)	124, 127, 447, 736, 773
PleI	GAGTC	4 cut(s)	139, 346, 434, 857
PpsI	GAGTC	4 cut(s)	139, 346, 434, 857
Psp124BI	GAGCTC	1 cut(s)	473
PspFI	CCCAGC	1 cut(s)	299
PspN4I	GGNNCC	2 cut(s)	462, 787
PspPI	GGNCC	1 cut(s)	786
PstI	CTGCAG	1 cut(s)	773
PstNI	CAGNNNCTG	1 cut(s)	275
PsuI	RGATCY	2 cut(s)	271, 889
PsyI	GACNNNGTC	1 cut(s)	337
SacI	GAGCTC	1 cut(s)	473
SatI	GCNGC	5 cut(s)	123, 126, 446, 735, 772
Sau3AI	GATC	7 cut(s)	211, 271, 362, 565, 609, 668, 889
Sau96I	GGNCC	1 cut(s)	786
SchI	GAGTC	4 cut(s)	140, 347, 434, 858
SduI	GDGCHC	3 cut(s)	473, 693, 764
SetI	ASST	8 cut(s)	24, 294, 408, 473, 663, 739, 799, 818
SfaNI	GCATC	2 cut(s)	286, 931
SfcI	CTRYAG	2 cut(s)	306, 769
Sfr274I	CTCGAG	1 cut(s)	844
SfuI	TTCGAA	1 cut(s)	709
SinI	GGWCC	1 cut(s)	786
SlaI	CTCGAG	1 cut(s)	844
SmlI	CTYRAG	1 cut(s)	844
SmoI	CTYRAG	1 cut(s)	844
Sse9I	AATT	4 cut(s)	398, 599, 614, 922
SsiI	CCGC	3 cut(s)	370, 446, 836
SspMI	CTAG	2 cut(s)	30, 738
SstI	GAGCTC	1 cut(s)	473
TaaI	ACNGT	2 cut(s)	436, 554
TaqI	TCGA	6 cut(s)	341, 527, 594, 667, 709, 845
TaqII	GACCGA	1 cut(s)	350
TasI	AATT	4 cut(s)	398, 599, 614, 922
TauI	GCSGC	1 cut(s)	448
TfiI	GAWTC	3 cut(s)	244, 373, 637
TscAI	CASTG	3 cut(s)	748, 838, 934
TseFI	GTSAC	4 cut(s)	62, 644, 806, 853
TseI	GCWGC	4 cut(s)	122, 125, 734, 771
Tsp45I	GTSAC	4 cut(s)	62, 644, 806, 853
TspDTI	ATGAA	3 cut(s)	83, 189, 874
TspRI	CASTG	3 cut(s)	748, 838, 934
Tth111I	GACNNNGTC	1 cut(s)	337
VneI	GTGCAC	1 cut(s)	689
VpaK11BI	GGWCC	1 cut(s)	786
XceI	RCATGY	1 cut(s)	901
XhoI	CTCGAG	1 cut(s)	844
XmiI	GTMKAC	1 cut(s)	134
XmnI	GAANNNNTTC	1 cut(s)	257
XspI	CTAG	2 cut(s)	30, 738

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.