Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0013907

Physical Location & Seq

Genomic Coordinates Forward (+)

8900422 .. 8901411

Gene Structure 990 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1057700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGAGAGGCACAGATGCAAGCTCTGCTCTAGGGCTTTTGCTAATGGCAGAGCACTGGGTGGTCATATGAAGGCTCACTTGGCAACTTTTCCTCTTCCCCCTAAAACCCACCAAATCACTGAGTCCGACTCGTCTTCATCTTCCTCCTCCGGCGAAGAACCAGAAAAAGAAGAACAACATTTGCAAGAAGAAGAAGAAGAGGAAAAGGGTTTGACTTATGGGTTGAGAGAGAACCCAAAGAGGAGTTTCCGGCTTGCAGATCCTGAGTTTTCTTTTGTTGATGCTGGGTCGGTGATTCAAGACAGAGAGAGTGAGACCGAGTCAAGAAATCCAACTCGGAGACGATCCAAGCGGAATCGAAGATCATTCGTTGTTGTTACAGATAATCTGCAGAGCCAGAAGTTGGAGTTGAAGAAAAAACCCAAGACAATTTCAACACCGCCGCGTTTGGCCGAGTCTCCTCCTCTAGCGGCAGAGCTTGAGCCGGTGAGCTCGGTCTCCGATACTTCTCCGGAAGAAGATGTTGCTATGTGCCTTATGATGCTGTCAAGAGATGTGTGGATGATAAGATTACATGATCATCAGCAAGCAGATCAATCGGTTCAAGTTCAAGAACAAAGTAGGCAAGTAGTGGAGGAGCTCGAGGGGGTCAAATTGAAGAAACTTCGAGGGAAGAATCGGTGTGAGAAATGCAACAAACTGTTTCGATCTTTTCAAGCAATGTGCGGCCACAAAAAGATTTGCTTTCGCAACGAGGAGGAAGCAATCAACAATGCAGGTGGTGAGAAGCTGTTTGAGTGCCCCTTTTGCTACAAAATATTTGGTTCCGGTCAAGCTCTTGGCGGTCACAAAAGATCTCACCTTTCGGGTTCTTCAAGATCAATGGTTGTATCAATGGCTGCAAAAACTGAAGTTAAAGAGGGTTTCCTAGATCTCAACCTGCCTGCTCCGGAAGAAGATGATGAATTTAGCGTGCTATCGGATGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

330

Amino Acids

37.1

Weight (kDa)

6.4

Isoelectric Point (pI)

76.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	3 - 27	1.2e-06	C2H2-type zinc finger
zf-C2H2_6	PF13912	265 - 288	4.8e-09	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013907)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16610
fragaria_vesca	FvH4_5g19030
malus_domestica	MD04G1063600.v1.1 MD06G1057700.v1.1
prunus_persica	Prupe.5G068600_v2.0.a1
pyrus_communis	pycom04g05740 pycom06g04850
rosa_chinensis	RchiOBHm_Chr7g0203441
rosa_laevigata	RLG00000003528
rosa_multiflora	Rmu_ssc0000485.1_g000001
rosa_roxburghii	Rroxscaffold_3G00253810
rosa_rugosa	Rorug07G0076000
rosa_samantha	Rh7AG205600 Rh7BG205400 Rh7CG218300 Rh7DG212700
rosa_wichuraiana	Rw7G017960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	767
Acc36I	ACCTGC	2 cut(s)	767, 948
AccB7I	CCANNNNNTGG	1 cut(s)	403
AccII	CGCG	1 cut(s)	445
AccIII	TCCGGA	2 cut(s)	511, 949
AciI	CCGC	6 cut(s)	352, 440, 443, 470, 726, 843
AclWI	GGATC	2 cut(s)	254, 339
AcoI	YGGCCR	2 cut(s)	450, 727
AcsI	RAATTY	1 cut(s)	965
AcuI	CTGAAG	1 cut(s)	930
AdeI	CACNNNGTG	1 cut(s)	59
AfiI	CCNNNNNNNGG	1 cut(s)	403
AgsI	TTSAA	8 cut(s)	299, 412, 435, 605, 611, 658, 716, 876
AjuI	GAANNNNNNNTTGG	2 cut(s)	62, 94
AluBI	AGCT	6 cut(s)	22, 478, 492, 640, 790, 836
AluI	AGCT	6 cut(s)	22, 478, 492, 640, 790, 836
Alw21I	GWGCWC	3 cut(s)	55, 494, 642
Alw26I	GTCTC	4 cut(s)	308, 334, 462, 502
AlwI	GGATC	2 cut(s)	254, 339
AlwNI	CAGNNNCTG	1 cut(s)	263
Ama87I	CYCGRG	1 cut(s)	641
Aor13HI	TCCGGA	2 cut(s)	511, 949
AoxI	GGCC	2 cut(s)	450, 727
ApeKI	GCWGC	1 cut(s)	899
ApoI	RAATTY	1 cut(s)	965
AsuHPI	GGTGA	4 cut(s)	304, 499, 794, 851
AvaI	CYCGRG	1 cut(s)	641
BaeGI	GKGCMC	1 cut(s)	803
BanII	GRGCYC	2 cut(s)	494, 642
BbsI	GAAGAC	1 cut(s)	126
Bbv12I	GWGCWC	3 cut(s)	55, 494, 642
BbvI	GCAGC	1 cut(s)	886
BcgI	CGANNNNNNTGC	2 cut(s)	579, 613
BclI	TGATCA	1 cut(s)	577
BcoDI	GTCTC	4 cut(s)	308, 334, 462, 502
BfaI	CTAG	3 cut(s)	30, 467, 929
BfmI	CTRYAG	1 cut(s)	389
BfuAI	ACCTGC	2 cut(s)	767, 948
BglII	AGATCT	2 cut(s)	854, 931
BisI	GCNGC	4 cut(s)	443, 471, 727, 900
BlsI	GCNGC	4 cut(s)	444, 472, 728, 901
BmeT110I	CYCGRG	1 cut(s)	641
BmiI	GGNNCC	1 cut(s)	826
BmrI	ACTGGG	1 cut(s)	65
BmsI	GCATC	4 cut(s)	5, 271, 531, 973
BmuI	ACTGGG	1 cut(s)	65
BpiI	GAAGAC	1 cut(s)	126
BplI	GAGNNNNNCTC	2 cut(s)	113, 145
BpuEI	CTTGAG	1 cut(s)	500
BsaI	GGTCTC	2 cut(s)	308, 502
BsaWI	WCCGGW	3 cut(s)	511, 827, 949
Bsc4I	CCNNNNNNNGG	1 cut(s)	403
Bse118I	RCCGGY	1 cut(s)	484
Bse1I	ACTGG	1 cut(s)	60
Bse3DI	GCAATG	1 cut(s)	726
BseAI	TCCGGA	2 cut(s)	511, 949
BseGI	GGATG	2 cut(s)	567, 988
BseLI	CCNNNNNNNGG	1 cut(s)	403
BseMI	GCAATG	1 cut(s)	726
BseMII	CTCAG	2 cut(s)	111, 255
BseNI	ACTGG	1 cut(s)	60
BseRI	GAGGAG	6 cut(s)	136, 256, 450, 453, 650, 770
BseSI	GKGCMC	1 cut(s)	803
BseXI	GCAGC	1 cut(s)	886
BseYI	CCCAGC	1 cut(s)	284
Bsh1236I	CGCG	1 cut(s)	445
BshFI	GGCC	2 cut(s)	452, 729
BsiHKAI	GWGCWC	3 cut(s)	55, 494, 642
BsiHKCI	CYCGRG	1 cut(s)	641
BsiSI	CCGG	6 cut(s)	150, 250, 485, 512, 828, 950
BslI	CCNNNNNNNGG	1 cut(s)	403
BsmAI	GTCTC	4 cut(s)	308, 334, 462, 502
BsmBI	CGTCTC	1 cut(s)	334
BsnI	GGCC	2 cut(s)	452, 729
Bso31I	GGTCTC	2 cut(s)	308, 502
BsoBI	CYCGRG	1 cut(s)	641
Bsp1286I	GDGCHC	4 cut(s)	55, 494, 642, 803
Bsp13I	TCCGGA	2 cut(s)	511, 949
Bsp143I	GATC	9 cut(s)	259, 344, 362, 577, 592, 707, 854, 878, 931
BspACI	CCGC	6 cut(s)	352, 440, 443, 470, 726, 843
BspANI	GGCC	2 cut(s)	452, 729
BspCNI	CTCAG	2 cut(s)	112, 256
BspEI	TCCGGA	2 cut(s)	511, 949
BspFNI	CGCG	1 cut(s)	445
BspLI	GGNNCC	1 cut(s)	826
BspMAI	CTGCAG	1 cut(s)	393
BspMI	ACCTGC	2 cut(s)	767, 948
BspPI	GGATC	2 cut(s)	254, 339
BspTNI	GGTCTC	2 cut(s)	308, 502
BsrDI	GCAATG	1 cut(s)	726
BsrFI	RCCGGY	1 cut(s)	484
BsrI	ACTGG	1 cut(s)	60
BssAI	RCCGGY	1 cut(s)	484
BssMI	GATC	9 cut(s)	259, 344, 362, 577, 592, 707, 854, 878, 931
Bst4CI	ACNGT	1 cut(s)	702
Bst6I	CTCTTC	2 cut(s)	99, 192
BstAPI	GCANNNNNTGC	1 cut(s)	24
BstC8I	GCNNGC	5 cut(s)	20, 255, 588, 945, 974
BstDEI	CTNAG	2 cut(s)	120, 264
BstF5I	GGATG	2 cut(s)	567, 988
BstFNI	CGCG	1 cut(s)	445
BstKTI	GATC	9 cut(s)	262, 347, 365, 580, 595, 710, 857, 881, 934
BstMAI	GTCTC	4 cut(s)	308, 334, 462, 502
BstMBI	GATC	9 cut(s)	259, 344, 362, 577, 592, 707, 854, 878, 931
BstMWI	GCNNNNNNNGC	3 cut(s)	24, 80, 807
BstSFI	CTRYAG	1 cut(s)	389
BstSLI	GKGCMC	1 cut(s)	803
BstUI	CGCG	1 cut(s)	445
BstV1I	GCAGC	1 cut(s)	886
BstV2I	GAAGAC	1 cut(s)	126
BstX2I	RGATCY	3 cut(s)	259, 854, 931
BstYI	RGATCY	3 cut(s)	259, 854, 931
BsuRI	GGCC	2 cut(s)	452, 729
BtsCI	GGATG	2 cut(s)	567, 988
BtsIMutI	CAGTG	2 cut(s)	53, 117
BveI	ACCTGC	2 cut(s)	767, 948
Cac8I	GCNNGC	5 cut(s)	20, 255, 588, 945, 974
CaiI	CAGNNNCTG	1 cut(s)	263
Cfr10I	RCCGGY	1 cut(s)	484
CspCI	CAANNNNNGTGG	2 cut(s)	760, 795
CviAII	CATG	1 cut(s)	575
DdeI	CTNAG	2 cut(s)	120, 264
DpnI	GATC	9 cut(s)	261, 346, 364, 579, 594, 709, 856, 880, 933
DpnII	GATC	9 cut(s)	259, 344, 362, 577, 592, 707, 854, 878, 931
DraIII	CACNNNGTG	1 cut(s)	59
EaeI	YGGCCR	2 cut(s)	450, 727
Eam1104I	CTCTTC	2 cut(s)	99, 192
EarI	CTCTTC	2 cut(s)	99, 192
Ecl136II	GAGCTC	2 cut(s)	492, 640
Eco24I	GRGCYC	2 cut(s)	494, 642
Eco31I	GGTCTC	2 cut(s)	308, 502
Eco53kI	GAGCTC	2 cut(s)	492, 640
Eco57I	CTGAAG	1 cut(s)	930
Eco88I	CYCGRG	1 cut(s)	641
EcoICRI	GAGCTC	2 cut(s)	492, 640
EcoT38I	GRGCYC	2 cut(s)	494, 642
Esp3I	CGTCTC	1 cut(s)	334
FaeI	CATG	1 cut(s)	578
FaiI	YATR	6 cut(s)	66, 68, 219, 530, 539, 576
FalI	AAGNNNNNCTT	4 cut(s)	62, 94, 728, 760
FatI	CATG	1 cut(s)	574
FauNDI	CATATG	1 cut(s)	66
FbaI	TGATCA	1 cut(s)	577
Fnu4HI	GCNGC	4 cut(s)	443, 471, 727, 900
FokI	GGATG	1 cut(s)	574
FriOI	GRGCYC	2 cut(s)	494, 642
Fsp4HI	GCNGC	4 cut(s)	443, 471, 727, 900
FspBI	CTAG	3 cut(s)	30, 467, 929
GluI	GCNGC	4 cut(s)	443, 471, 727, 900
GsaI	CCCAGC	1 cut(s)	288
HaeIII	GGCC	2 cut(s)	452, 729
HapII	CCGG	6 cut(s)	150, 250, 485, 512, 828, 950
Hin1II	CATG	1 cut(s)	578
HinfI	GANTC	7 cut(s)	122, 128, 295, 320, 355, 455, 676
HpaII	CCGG	6 cut(s)	150, 250, 485, 512, 828, 950
HphI	GGTGA	4 cut(s)	304, 499, 794, 851
Hpy188I	TCNGA	4 cut(s)	127, 339, 502, 982
Hpy188III	TCNNGA	8 cut(s)	263, 299, 324, 512, 549, 611, 876, 950
HpyAV	CCTTC	1 cut(s)	64
HpyCH4III	ACNGT	1 cut(s)	702
HpyCH4V	TGCA	7 cut(s)	18, 184, 257, 391, 693, 776, 902
HpyF10VI	GCNNNNNNNGC	3 cut(s)	24, 80, 807
HpyF3I	CTNAG	2 cut(s)	120, 264
Hsp92II	CATG	1 cut(s)	578
Kpn2I	TCCGGA	2 cut(s)	511, 949
Ksp22I	TGATCA	1 cut(s)	577
Kzo9I	GATC	9 cut(s)	259, 344, 362, 577, 592, 707, 854, 878, 931
LmnI	GCTCC	2 cut(s)	637, 952
Lsp1109I	GCAGC	1 cut(s)	886
LweI	GCATC	4 cut(s)	5, 271, 531, 973
MaeI	CTAG	3 cut(s)	30, 467, 929
MaeIII	GTNAC	2 cut(s)	376, 845
MalI	GATC	9 cut(s)	261, 346, 364, 579, 594, 709, 856, 880, 933
MboI	GATC	9 cut(s)	259, 344, 362, 577, 592, 707, 854, 878, 931
MflI	RGATCY	3 cut(s)	259, 854, 931
MhlI	GDGCHC	4 cut(s)	55, 494, 642, 803
MluCI	AATT	3 cut(s)	429, 653, 965
MlyI	GAGTC	4 cut(s)	122, 131, 329, 464
MmeI	TCCRAC	3 cut(s)	150, 356, 384
MroI	TCCGGA	2 cut(s)	511, 949
MseI	TTAA	1 cut(s)	915
MspI	CCGG	6 cut(s)	150, 250, 485, 512, 828, 950
MvnI	CGCG	1 cut(s)	445
MwoI	GCNNNNNNNGC	3 cut(s)	24, 80, 807
NdeI	CATATG	1 cut(s)	66
NdeII	GATC	9 cut(s)	259, 344, 362, 577, 592, 707, 854, 878, 931
NlaIII	CATG	1 cut(s)	578
NlaIV	GGNNCC	1 cut(s)	826
NmeAIII	GCCGAG	1 cut(s)	478
NmuCI	GTSAC	1 cut(s)	845
PaeR7I	CTCGAG	1 cut(s)	641
PaqCI	CACCTGC	1 cut(s)	767
PfeI	GAWTC	3 cut(s)	295, 355, 676
PflFI	GACNNNGTC	1 cut(s)	319
PflMI	CCANNNNNTGG	1 cut(s)	403
PkrI	GCNGC	4 cut(s)	444, 472, 728, 901
PleI	GAGTC	4 cut(s)	122, 130, 328, 463
PpsI	GAGTC	4 cut(s)	122, 130, 328, 463
Psp124BI	GAGCTC	2 cut(s)	494, 642
PspFI	CCCAGC	1 cut(s)	284
PspN4I	GGNNCC	1 cut(s)	826
PspXI	VCTCGAGB	1 cut(s)	641
PstI	CTGCAG	1 cut(s)	393
PstNI	CAGNNNCTG	1 cut(s)	263
PsuI	RGATCY	3 cut(s)	259, 854, 931
PsyI	GACNNNGTC	1 cut(s)	319
SacI	GAGCTC	2 cut(s)	494, 642
SaqAI	TTAA	1 cut(s)	915
SatI	GCNGC	4 cut(s)	443, 471, 727, 900
Sau3AI	GATC	9 cut(s)	259, 344, 362, 577, 592, 707, 854, 878, 931
SchI	GAGTC	4 cut(s)	122, 131, 329, 464
SduI	GDGCHC	4 cut(s)	55, 494, 642, 803
SetI	ASST	9 cut(s)	24, 480, 494, 642, 781, 792, 838, 864, 942
SfaNI	GCATC	4 cut(s)	5, 271, 531, 973
SfcI	CTRYAG	1 cut(s)	389
Sfr274I	CTCGAG	1 cut(s)	641
SlaI	CTCGAG	1 cut(s)	641
SmlI	CTYRAG	2 cut(s)	479, 641
SmoI	CTYRAG	2 cut(s)	479, 641
Sse9I	AATT	3 cut(s)	429, 653, 965
SsiI	CCGC	6 cut(s)	352, 440, 443, 470, 726, 843
SspI	AATATT	1 cut(s)	819
SspMI	CTAG	3 cut(s)	30, 467, 929
SstI	GAGCTC	2 cut(s)	494, 642
TaaI	ACNGT	1 cut(s)	702
TaqI	TCGA	4 cut(s)	358, 642, 667, 706
TaqII	GACCGA	2 cut(s)	332, 484
TasI	AATT	3 cut(s)	429, 653, 965
TauI	GCSGC	3 cut(s)	445, 473, 729
TfiI	GAWTC	3 cut(s)	295, 355, 676
Tru1I	TTAA	1 cut(s)	915
Tru9I	TTAA	1 cut(s)	915
TscAI	CASTG	2 cut(s)	60, 124
TseFI	GTSAC	1 cut(s)	845
TseI	GCWGC	1 cut(s)	899
Tsp45I	GTSAC	1 cut(s)	845
TspDTI	ATGAA	3 cut(s)	83, 126, 978
TspRI	CASTG	2 cut(s)	60, 124
Tth111I	GACNNNGTC	1 cut(s)	319
Van91I	CCANNNNNTGG	1 cut(s)	403
XapI	RAATTY	1 cut(s)	965
XhoI	CTCGAG	1 cut(s)	641
XspI	CTAG	3 cut(s)	30, 467, 929

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.