Rh7CG218300

Zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0013907
Physical Location & Seq
Reverse (-)
19979494 .. 19981398
1905 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG218300.1

Sequence Viewer

Length: 972 bp
ATGGAGAAGCACCAATGCAAGCTCTGCGCTAGGATTTTCAACAATGGCAGAGCATTGGGTGGTCACATGAAGGCTCACATGGCCGTCCTTCCTCTCCCTCCAAAGACCCACCAACAACTCGCTGCTGCTGAGTCTACTCACTCTGCCTCGTCCTCCTCTTCGTCTTCTGAAGATGAACAGCAAAAGGGTTGTCATGAACAAGAGGAGGAAGATCAGAAGGCTTTGGCTTATGTGTTGAGGGAGAATCCCAAGAAAAGTTTCAGACTTGCAGATCCTGAGTTCTCTTTTCAGGTTGATGCTGGGTCTGTAGTTATTCAAGACAGGGAGAGCGAGACCGAGTCGAGAAACCCAACTCGGAGACGATCCAAGCGGAATCGGAGGATGAGTTTTACAGAGAAATTGGAGCTGAAGAAACCCAAGTTGACAACTTCAACGGTTGACTCGCCGCCAGCCGAGCCGGAGCCGTTGAGCTCAGTCTCCGACACTTCACCGGAAGAGGATGTTGCCATGTGCCTCATGTTGCTGTCGAGGGATGTGTGGATGAGAACAAACTGTGGAGAAGCAGATCAAGAACAAAATGGGAAAGAGGTGGTGGTTGCAGTGAAAGATGAGGAGTTCGAGCAATTGGAGGAGATCAAATTGAAGAAAGTGAGAGGCAAGAATCGGTGTGACAAATGCAGTAAGCTCTTTCGATCTCATCAAGCAATGTGCGTGCACAGGAAGATTTGCTTTCGAAGCGAAGCAGAGGCCAACAATGCAGCTAGCAGTGCCAGTCTGTTCAAGTGCCCATTTTGCAGCAAGATTTTTGGGTCCGGACAAGCTCTTGGGGGTCACAAAAGGTCTCATCTTTCTGGCACTGCGGGTTACTCCAGAGTCGTCACAAAAGTTAAAGAAGTTCGGGAGAGTTTCATTGATCTCAACATGCCTGCTCCACAAGAAGAAGATGATTTCAGTGTTGTTTCCGATGCTTAG

Protein Analysis

323

Amino Acids

36.1

Weight (kDa)

7.12

Isoelectric Point (pI)

59.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_6 PF13912 260 - 283 2.2e-09 C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013907)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16610
fragaria_vesca FvH4_5g19030
malus_domestica MD04G1063600.v1.1 MD06G1057700.v1.1
prunus_persica Prupe.5G068600_v2.0.a1
pyrus_communis pycom04g05740 pycom06g04850
rosa_chinensis RchiOBHm_Chr7g0203441
rosa_laevigata RLG00000003528
rosa_multiflora Rmu_ssc0000485.1_g000001
rosa_roxburghii Rroxscaffold_3G00253810
rosa_rugosa Rorug07G0076000
rosa_samantha Rh7AG205600 Rh7BG205400 Rh7CG218300 Rh7DG212700
rosa_wichuraiana Rw7G017960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 134
AccIII TCCGGA 1 cut(s) 812
AciI CCGC 3 cut(s) 370, 446, 860
AclWI GGATC 2 cut(s) 266, 357
AcoI YGGCCR 1 cut(s) 81
AcuI CTGAAG 2 cut(s) 189, 428
AgsI TTSAA 5 cut(s) 40, 317, 432, 643, 781
AjuI GAANNNNNNNTTGG 2 cut(s) 242, 274
AluBI AGCT 6 cut(s) 22, 406, 471, 685, 761, 821
AluI AGCT 6 cut(s) 22, 406, 471, 685, 761, 821
Alw21I GWGCWC 2 cut(s) 473, 717
Alw26I GTCTC 4 cut(s) 326, 352, 481, 846
Alw44I GTGCAC 1 cut(s) 713
AlwI GGATC 2 cut(s) 266, 357
AlwNI CAGNNNCTG 1 cut(s) 275
Aor13HI TCCGGA 1 cut(s) 812
AoxI GGCC 2 cut(s) 81, 747
ApaLI GTGCAC 1 cut(s) 713
ApeKI GCWGC 4 cut(s) 122, 125, 758, 795
ArsI GACNNNNNNTTYG 2 cut(s) 175, 207
Asp700I GAANNNNTTC 1 cut(s) 257
AspLEI GCGC 1 cut(s) 29
AspS9I GGNCC 1 cut(s) 810
AsuHPI GGTGA 1 cut(s) 480
AsuII TTCGAA 1 cut(s) 733
AsuNHI GCTAGC 1 cut(s) 761
AvaII GGWCC 1 cut(s) 810
BaeGI GKGCMC 2 cut(s) 717, 788
BanII GRGCYC 1 cut(s) 473
BbsI GAAGAC 1 cut(s) 156
Bbv12I GWGCWC 2 cut(s) 473, 717
BbvI GCAGC 4 cut(s) 109, 112, 770, 807
BceAI ACGGC 2 cut(s) 68, 448
BcoDI GTCTC 4 cut(s) 326, 352, 481, 846
BfaI CTAG 2 cut(s) 30, 762
BfmI CTRYAG 1 cut(s) 306
BisI GCNGC 5 cut(s) 123, 126, 446, 759, 796
BlsI GCNGC 5 cut(s) 124, 127, 447, 760, 797
Bme18I GGWCC 1 cut(s) 810
BmgT120I GGNCC 1 cut(s) 810
BmiI GGNNCC 2 cut(s) 462, 811
BmsI GCATC 2 cut(s) 286, 955
BmtI GCTAGC 1 cut(s) 765
BpiI GAAGAC 1 cut(s) 156
BpmI CTGGAG 1 cut(s) 853
Bpu14I TTCGAA 1 cut(s) 733
BsaI GGTCTC 2 cut(s) 326, 846
BsaWI WCCGGW 2 cut(s) 490, 812
BsaXI ACNNNNNCTCC 2 cut(s) 370, 400
Bse1I ACTGG 1 cut(s) 771
Bse3DI GCAATG 1 cut(s) 711
BseAI TCCGGA 1 cut(s) 812
BseGI GGATG 4 cut(s) 387, 505, 538, 546
BseMI GCAATG 1 cut(s) 711
BseMII CTCAG 3 cut(s) 120, 267, 486
BseNI ACTGG 1 cut(s) 771
BseRI GAGGAG 4 cut(s) 145, 218, 626, 644
BseSI GKGCMC 2 cut(s) 717, 788
BseXI GCAGC 4 cut(s) 109, 112, 770, 807
BseYI CCCAGC 1 cut(s) 299
BshFI GGCC 2 cut(s) 83, 749
BsiHKAI GWGCWC 2 cut(s) 473, 717
BsiSI CCGG 3 cut(s) 458, 491, 813
BsmAI GTCTC 4 cut(s) 326, 352, 481, 846
BsmBI CGTCTC 1 cut(s) 352
BsnI GGCC 2 cut(s) 83, 749
Bso31I GGTCTC 2 cut(s) 326, 846
Bsp119I TTCGAA 1 cut(s) 733
Bsp1286I GDGCHC 3 cut(s) 473, 717, 788
Bsp13I TCCGGA 1 cut(s) 812
Bsp143I GATC 7 cut(s) 211, 271, 362, 565, 633, 692, 913
BspACI CCGC 3 cut(s) 370, 446, 860
BspANI GGCC 2 cut(s) 83, 749
BspCNI CTCAG 3 cut(s) 121, 268, 485
BspEI TCCGGA 1 cut(s) 812
BspHI TCATGA 1 cut(s) 193
BspLI GGNNCC 2 cut(s) 462, 811
BspOI GCTAGC 1 cut(s) 765
BspPI GGATC 2 cut(s) 266, 357
BspT104I TTCGAA 1 cut(s) 733
BspTNI GGTCTC 2 cut(s) 326, 846
BsrDI GCAATG 1 cut(s) 711
BsrI ACTGG 1 cut(s) 771
BssMI GATC 7 cut(s) 211, 271, 362, 565, 633, 692, 913
Bst4CI ACNGT 2 cut(s) 436, 554
Bst6I CTCTTC 2 cut(s) 163, 489
BstAPI GCANNNNNTGC 1 cut(s) 24
BstBI TTCGAA 1 cut(s) 733
BstC8I GCNNGC 5 cut(s) 20, 450, 713, 763, 927
BstDEI CTNAG 4 cut(s) 129, 276, 472, 969
BstF5I GGATG 4 cut(s) 387, 505, 538, 546
BstHHI GCGC 1 cut(s) 29
BstKTI GATC 7 cut(s) 214, 274, 365, 568, 636, 695, 916
BstMAI GTCTC 4 cut(s) 326, 352, 481, 846
BstMBI GATC 7 cut(s) 211, 271, 362, 565, 633, 692, 913
BstMWI GCNNNNNNNGC 7 cut(s) 24, 80, 454, 735, 755, 767, 792
BstNSI RCATGY 1 cut(s) 925
BstSFI CTRYAG 1 cut(s) 306
BstSLI GKGCMC 2 cut(s) 717, 788
BstV1I GCAGC 4 cut(s) 109, 112, 770, 807
BstV2I GAAGAC 1 cut(s) 156
BstX2I RGATCY 1 cut(s) 271
BstYI RGATCY 1 cut(s) 271
BsuRI GGCC 2 cut(s) 83, 749
BtsCI GGATG 4 cut(s) 387, 505, 538, 546
BtsI GCAGTG 3 cut(s) 606, 772, 855
BtsIMutI CAGTG 4 cut(s) 606, 772, 855, 958
Cac8I GCNNGC 5 cut(s) 20, 450, 713, 763, 927
CaiI CAGNNNCTG 1 cut(s) 275
CciI TCATGA 1 cut(s) 193
CfoI GCGC 1 cut(s) 29
Cfr13I GGNCC 1 cut(s) 810
CviAII CATG 6 cut(s) 67, 79, 194, 508, 517, 922
DdeI CTNAG 4 cut(s) 129, 276, 472, 969
DpnI GATC 7 cut(s) 213, 273, 364, 567, 635, 694, 915
DpnII GATC 7 cut(s) 211, 271, 362, 565, 633, 692, 913
EaeI YGGCCR 1 cut(s) 81
Eam1104I CTCTTC 2 cut(s) 163, 489
EarI CTCTTC 2 cut(s) 163, 489
Ecl136II GAGCTC 1 cut(s) 471
Eco24I GRGCYC 1 cut(s) 473
Eco31I GGTCTC 2 cut(s) 326, 846
Eco47I GGWCC 1 cut(s) 810
Eco53kI GAGCTC 1 cut(s) 471
Eco57I CTGAAG 2 cut(s) 189, 428
EcoICRI GAGCTC 1 cut(s) 471
EcoT38I GRGCYC 1 cut(s) 473
Esp3I CGTCTC 1 cut(s) 352
FaeI CATG 6 cut(s) 70, 82, 197, 511, 520, 925
FaiI YATR 7 cut(s) 68, 80, 195, 231, 509, 518, 923
FalI AAGNNNNNCTT 2 cut(s) 713, 745
FatI CATG 6 cut(s) 66, 78, 193, 507, 516, 921
FauI CCCGC 1 cut(s) 853
FblI GTMKAC 1 cut(s) 134
Fnu4HI GCNGC 5 cut(s) 123, 126, 446, 759, 796
FokI GGATG 4 cut(s) 394, 512, 545, 553
FriOI GRGCYC 1 cut(s) 473
Fsp4HI GCNGC 5 cut(s) 123, 126, 446, 759, 796
FspBI CTAG 2 cut(s) 30, 762
GlaI GCGC 1 cut(s) 28
GluI GCNGC 5 cut(s) 123, 126, 446, 759, 796
GsaI CCCAGC 1 cut(s) 303
GsuI CTGGAG 1 cut(s) 853
HaeIII GGCC 2 cut(s) 83, 749
HapII CCGG 3 cut(s) 458, 491, 813
HhaI GCGC 1 cut(s) 29
Hin1II CATG 6 cut(s) 70, 82, 197, 511, 520, 925
Hin6I GCGC 1 cut(s) 27
HinP1I GCGC 1 cut(s) 27
HincII GTYRAC 2 cut(s) 423, 439
HindII GTYRAC 2 cut(s) 423, 439
HinfI GANTC 7 cut(s) 131, 244, 338, 373, 440, 661, 873
HpaII CCGG 3 cut(s) 458, 491, 813
HphI GGTGA 1 cut(s) 480
Hpy166II GTNNAC 4 cut(s) 135, 423, 439, 715
Hpy188I TCNGA 7 cut(s) 169, 216, 263, 357, 378, 481, 964
Hpy188III TCNNGA 8 cut(s) 194, 275, 317, 342, 569, 813, 870, 899
Hpy8I GTNNAC 4 cut(s) 135, 423, 439, 715
HpyAV CCTTC 3 cut(s) 64, 98, 211
HpyCH4III ACNGT 2 cut(s) 436, 554
HpyCH4V TGCA 7 cut(s) 18, 269, 599, 678, 715, 758, 795
HpyF10VI GCNNNNNNNGC 7 cut(s) 24, 80, 454, 735, 755, 767, 792
HpyF3I CTNAG 4 cut(s) 129, 276, 472, 969
Hsp92II CATG 6 cut(s) 70, 82, 197, 511, 520, 925
HspAI GCGC 1 cut(s) 27
Kpn2I TCCGGA 1 cut(s) 812
Kzo9I GATC 7 cut(s) 211, 271, 362, 565, 633, 692, 913
LmnI GCTCC 3 cut(s) 403, 460, 934
Lsp1109I GCAGC 4 cut(s) 109, 112, 770, 807
LweI GCATC 2 cut(s) 286, 955
MaeI CTAG 2 cut(s) 30, 762
MaeIII GTNAC 5 cut(s) 62, 668, 830, 863, 877
MalI GATC 7 cut(s) 213, 273, 364, 567, 635, 694, 915
MboI GATC 7 cut(s) 211, 271, 362, 565, 633, 692, 913
MfeI CAATTG 1 cut(s) 623
MflI RGATCY 1 cut(s) 271
MhlI GDGCHC 3 cut(s) 473, 717, 788
MluCI AATT 3 cut(s) 398, 623, 638
MlyI GAGTC 4 cut(s) 140, 347, 434, 882
MmeI TCCRAC 1 cut(s) 504
MroI TCCGGA 1 cut(s) 812
MroXI GAANNNNTTC 1 cut(s) 257
MseI TTAA 1 cut(s) 888
MspI CCGG 3 cut(s) 458, 491, 813
MunI CAATTG 1 cut(s) 623
MwoI GCNNNNNNNGC 7 cut(s) 24, 80, 454, 735, 755, 767, 792
NdeII GATC 7 cut(s) 211, 271, 362, 565, 633, 692, 913
NheI GCTAGC 1 cut(s) 761
NlaIII CATG 6 cut(s) 70, 82, 197, 511, 520, 925
NlaIV GGNNCC 2 cut(s) 462, 811
NmeAIII GCCGAG 1 cut(s) 478
NmuCI GTSAC 4 cut(s) 62, 668, 830, 877
NspI RCATGY 1 cut(s) 925
NspV TTCGAA 1 cut(s) 733
PagI TCATGA 1 cut(s) 193
PdmI GAANNNNTTC 1 cut(s) 257
PfeI GAWTC 3 cut(s) 244, 373, 661
PflFI GACNNNGTC 1 cut(s) 337
PkrI GCNGC 5 cut(s) 124, 127, 447, 760, 797
PleI GAGTC 4 cut(s) 139, 346, 434, 881
PpsI GAGTC 4 cut(s) 139, 346, 434, 881
Psp124BI GAGCTC 1 cut(s) 473
PspFI CCCAGC 1 cut(s) 299
PspN4I GGNNCC 2 cut(s) 462, 811
PspPI GGNCC 1 cut(s) 810
PstNI CAGNNNCTG 1 cut(s) 275
PsuI RGATCY 1 cut(s) 271
PsyI GACNNNGTC 1 cut(s) 337
SacI GAGCTC 1 cut(s) 473
SaqAI TTAA 1 cut(s) 888
SatI GCNGC 5 cut(s) 123, 126, 446, 759, 796
Sau3AI GATC 7 cut(s) 211, 271, 362, 565, 633, 692, 913
Sau96I GGNCC 1 cut(s) 810
SchI GAGTC 4 cut(s) 140, 347, 434, 882
SduI GDGCHC 3 cut(s) 473, 717, 788
SetI ASST 9 cut(s) 24, 294, 408, 473, 591, 687, 763, 823, 842
SfaNI GCATC 2 cut(s) 286, 955
SfcI CTRYAG 1 cut(s) 306
SfuI TTCGAA 1 cut(s) 733
SinI GGWCC 1 cut(s) 810
Sse9I AATT 3 cut(s) 398, 623, 638
SsiI CCGC 3 cut(s) 370, 446, 860
SspMI CTAG 2 cut(s) 30, 762
SstI GAGCTC 1 cut(s) 473
TaaI ACNGT 2 cut(s) 436, 554
TaqI TCGA 5 cut(s) 341, 527, 618, 691, 733
TaqII GACCGA 1 cut(s) 350
TasI AATT 3 cut(s) 398, 623, 638
TauI GCSGC 1 cut(s) 448
TfiI GAWTC 3 cut(s) 244, 373, 661
Tru1I TTAA 1 cut(s) 888
Tru9I TTAA 1 cut(s) 888
TscAI CASTG 4 cut(s) 606, 772, 862, 958
TseFI GTSAC 4 cut(s) 62, 668, 830, 877
TseI GCWGC 4 cut(s) 122, 125, 758, 795
Tsp45I GTSAC 4 cut(s) 62, 668, 830, 877
TspDTI ATGAA 4 cut(s) 83, 189, 210, 898
TspRI CASTG 4 cut(s) 606, 772, 862, 958
Tth111I GACNNNGTC 1 cut(s) 337
VneI GTGCAC 1 cut(s) 713
VpaK11BI GGWCC 1 cut(s) 810
XceI RCATGY 1 cut(s) 925
XmiI GTMKAC 1 cut(s) 134
XmnI GAANNNNTTC 1 cut(s) 257
XspI CTAG 2 cut(s) 30, 762
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.