Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0013907

Physical Location & Seq

Genomic Coordinates Reverse (-)

10965011 .. 10966422

Gene Structure 1412 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g19030.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGAGAAGCACCAATGCAAGCTCTGCTCCAGGTTCTTCAACAATGGCAGAGCATTAGGTGGTCACATGAAGGCTCACATGGCCGTGCTTCCTCTCCCTCCAAAGACACACCAGCAACTCGCTCCTGCTGAGTCTACTCACTCTGCCTCGTCCTTCTCTTCATCTTCTGAAGATGAACAGCAAAAGGGTAGTCATCAACCAGAGGAGGAAGATCAGAAGGGTTTGGCTTATGGGTTGAGGGAGAATCCCAAGAAAAGTTTCAGACTTGCAGATCCTGAGTTCTCTTTTCAGGTTGATGCTGGCTCTGTTGTTATTCAAGACAGGGAGAGCGAGACCGAGTCGAGAAACCCAACTAGGAGACGATCCAAGAGGAATCGGAAAATGAGTTTTACAGAAAATTTGGAGATGAAGAAACCCAAGTTGACAACTTCAACGGTTGACTCGCCGCCGGCCGAGCCGGAGCCTTTGAGCTCAGTTTCCGACACTTCACCGGAAGAGGACGTTGCCATGTGCCTCATGATGCTCTCGAGGGATGTGTGGATGGGAGCAAACTATGGGGAGGCAGATCAAGAACAAAATGGGAAAGAGGTTGTGGTTGCAGTGAAAGATGAGGAGTTCGAGCAATTGGAGGAGATCAAATTGAAGAAAACGAGAGGTAAGAATCGCTGCGACAAATGCAGCAAGCTGTTTCGATCTCATCAAGCAATGTGCGTACACAGGAAGATTTGTTTTCAAAGCGAAGAAGAGGCTAACAATGCAGCTAGCAGTGCCAGTCTGTTCAAGTGCCCATTTTGCAGCAAGATTTTTGGGTCCGGACAAGCACTTGGGGGTCACAAAAGGTCTCATCTCTCAGGCACTTCGGGTTACTCGAAGGTTGTCACAAAAGTTAAAGAAGTTCGGGAAAGTTTCATAGATCTCAACATGCCTGCTCCACAAGAAGAAGACGATTTCAGTGTGGTTTCTGATGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

324

Amino Acids

36.07

Weight (kDa)

6.39

Isoelectric Point (pI)

59.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	260 - 283	2.2e-09	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013907)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16610
fragaria_vesca	FvH4_5g19030
malus_domestica	MD04G1063600.v1.1 MD06G1057700.v1.1
prunus_persica	Prupe.5G068600_v2.0.a1
pyrus_communis	pycom04g05740 pycom06g04850
rosa_chinensis	RchiOBHm_Chr7g0203441
rosa_laevigata	RLG00000003528
rosa_multiflora	Rmu_ssc0000485.1_g000001
rosa_roxburghii	Rroxscaffold_3G00253810
rosa_rugosa	Rorug07G0076000
rosa_samantha	Rh7AG205600 Rh7BG205400 Rh7CG218300 Rh7DG212700
rosa_wichuraiana	Rw7G017960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	134
AccIII	TCCGGA	1 cut(s)	812
AciI	CCGC	1 cut(s)	446
AclWI	GGATC	2 cut(s)	266, 357
AcoI	YGGCCR	2 cut(s)	81, 450
AcsI	RAATTY	1 cut(s)	397
AcuI	CTGAAG	1 cut(s)	189
AfaI	GTAC	1 cut(s)	714
AgsI	TTSAA	6 cut(s)	40, 317, 432, 643, 734, 781
AjnI	CCWGG	1 cut(s)	29
AjuI	GAANNNNNNNTTGG	2 cut(s)	242, 274
AluBI	AGCT	4 cut(s)	22, 471, 685, 761
AluI	AGCT	4 cut(s)	22, 471, 685, 761
Alw21I	GWGCWC	1 cut(s)	473
Alw26I	GTCTC	3 cut(s)	326, 352, 846
AlwI	GGATC	2 cut(s)	266, 357
AlwNI	CAGNNNCTG	1 cut(s)	275
Ama87I	CYCGRG	1 cut(s)	526
Aor13HI	TCCGGA	1 cut(s)	812
AoxI	GGCC	2 cut(s)	81, 450
ApeKI	GCWGC	4 cut(s)	666, 678, 758, 795
ApoI	RAATTY	1 cut(s)	397
ArsI	GACNNNNNNTTYG	2 cut(s)	175, 207
Asp700I	GAANNNNTTC	1 cut(s)	257
AspS9I	GGNCC	1 cut(s)	810
AsuHPI	GGTGA	1 cut(s)	480
AsuNHI	GCTAGC	1 cut(s)	761
AvaI	CYCGRG	1 cut(s)	526
AvaII	GGWCC	1 cut(s)	810
BaeGI	GKGCMC	1 cut(s)	788
BanII	GRGCYC	1 cut(s)	473
BbsI	GAAGAC	1 cut(s)	948
Bbv12I	GWGCWC	1 cut(s)	473
BbvI	GCAGC	4 cut(s)	653, 690, 770, 807
BccI	CCATC	1 cut(s)	535
BceAI	ACGGC	1 cut(s)	68
BciT130I	CCWGG	1 cut(s)	31
BcoDI	GTCTC	3 cut(s)	326, 352, 846
BfaI	CTAG	2 cut(s)	354, 762
BglII	AGATCT	1 cut(s)	913
BisI	GCNGC	5 cut(s)	446, 667, 679, 759, 796
BlsI	GCNGC	5 cut(s)	447, 668, 680, 760, 797
Bme1390I	CCNGG	1 cut(s)	31
Bme18I	GGWCC	1 cut(s)	810
BmeT110I	CYCGRG	1 cut(s)	526
BmgT120I	GGNCC	1 cut(s)	810
BmiI	GGNNCC	2 cut(s)	462, 811
BmrFI	CCNGG	1 cut(s)	31
BmsI	GCATC	3 cut(s)	286, 510, 955
BmtI	GCTAGC	1 cut(s)	765
BpiI	GAAGAC	1 cut(s)	948
BpmI	CTGGAG	1 cut(s)	13
BsaI	GGTCTC	2 cut(s)	326, 846
BsaWI	WCCGGW	2 cut(s)	490, 812
Bse118I	RCCGGY	1 cut(s)	448
Bse1I	ACTGG	1 cut(s)	771
Bse3DI	GCAATG	1 cut(s)	711
BseAI	TCCGGA	1 cut(s)	812
BseBI	CCWGG	1 cut(s)	31
BseGI	GGATG	2 cut(s)	538, 546
BseMI	GCAATG	1 cut(s)	711
BseMII	CTCAG	4 cut(s)	120, 267, 486, 864
BseNI	ACTGG	1 cut(s)	771
BseRI	GAGGAG	3 cut(s)	218, 626, 644
BseSI	GKGCMC	1 cut(s)	788
BseX3I	CGGCCG	1 cut(s)	450
BseXI	GCAGC	4 cut(s)	653, 690, 770, 807
Bsh1285I	CGRYCG	1 cut(s)	453
BshFI	GGCC	2 cut(s)	83, 452
BsiEI	CGRYCG	1 cut(s)	453
BsiHKAI	GWGCWC	1 cut(s)	473
BsiHKCI	CYCGRG	1 cut(s)	526
BsiSI	CCGG	4 cut(s)	449, 458, 491, 813
BsmAI	GTCTC	3 cut(s)	326, 352, 846
BsmBI	CGTCTC	1 cut(s)	352
BsnI	GGCC	2 cut(s)	83, 452
Bso31I	GGTCTC	2 cut(s)	326, 846
BsoBI	CYCGRG	1 cut(s)	526
Bsp1286I	GDGCHC	2 cut(s)	473, 788
Bsp13I	TCCGGA	1 cut(s)	812
Bsp143I	GATC	7 cut(s)	211, 271, 362, 565, 633, 692, 913
BspACI	CCGC	1 cut(s)	446
BspANI	GGCC	2 cut(s)	83, 452
BspCNI	CTCAG	4 cut(s)	121, 268, 485, 863
BspEI	TCCGGA	1 cut(s)	812
BspHI	TCATGA	1 cut(s)	516
BspLI	GGNNCC	2 cut(s)	462, 811
BspOI	GCTAGC	1 cut(s)	765
BspPI	GGATC	2 cut(s)	266, 357
BspTNI	GGTCTC	2 cut(s)	326, 846
BsrDI	GCAATG	1 cut(s)	711
BsrFI	RCCGGY	1 cut(s)	448
BsrI	ACTGG	1 cut(s)	771
BssAI	RCCGGY	1 cut(s)	448
BssMI	GATC	7 cut(s)	211, 271, 362, 565, 633, 692, 913
Bst2UI	CCWGG	1 cut(s)	31
Bst4CI	ACNGT	1 cut(s)	436
Bst6I	CTCTTC	3 cut(s)	163, 489, 738
BstAPI	GCANNNNNTGC	1 cut(s)	24
BstC8I	GCNNGC	6 cut(s)	20, 301, 450, 683, 763, 927
BstDEI	CTNAG	5 cut(s)	129, 276, 472, 850, 969
BstF5I	GGATG	2 cut(s)	538, 546
BstKTI	GATC	7 cut(s)	214, 274, 365, 568, 636, 695, 916
BstMAI	GTCTC	3 cut(s)	326, 352, 846
BstMBI	GATC	7 cut(s)	211, 271, 362, 565, 633, 692, 913
BstMCI	CGRYCG	1 cut(s)	453
BstMWI	GCNNNNNNNGC	7 cut(s)	24, 80, 454, 675, 755, 767, 792
BstNI	CCWGG	1 cut(s)	31
BstNSI	RCATGY	1 cut(s)	925
BstSCI	CCNGG	1 cut(s)	29
BstSLI	GKGCMC	1 cut(s)	788
BstV1I	GCAGC	4 cut(s)	653, 690, 770, 807
BstV2I	GAAGAC	1 cut(s)	948
BstX2I	RGATCY	2 cut(s)	271, 913
BstYI	RGATCY	2 cut(s)	271, 913
BstZI	CGGCCG	1 cut(s)	450
BsuRI	GGCC	2 cut(s)	83, 452
BtsCI	GGATG	2 cut(s)	538, 546
BtsI	GCAGTG	2 cut(s)	606, 772
BtsIMutI	CAGTG	3 cut(s)	606, 772, 958
Cac8I	GCNNGC	6 cut(s)	20, 301, 450, 683, 763, 927
CaiI	CAGNNNCTG	1 cut(s)	275
CciI	TCATGA	1 cut(s)	516
Cfr10I	RCCGGY	1 cut(s)	448
Cfr13I	GGNCC	1 cut(s)	810
Csp6I	GTAC	1 cut(s)	713
CviAII	CATG	5 cut(s)	67, 79, 508, 517, 922
CviQI	GTAC	1 cut(s)	713
DdeI	CTNAG	5 cut(s)	129, 276, 472, 850, 969
DpnI	GATC	7 cut(s)	213, 273, 364, 567, 635, 694, 915
DpnII	GATC	7 cut(s)	211, 271, 362, 565, 633, 692, 913
EaeI	YGGCCR	2 cut(s)	81, 450
EagI	CGGCCG	1 cut(s)	450
Eam1104I	CTCTTC	3 cut(s)	163, 489, 738
EarI	CTCTTC	3 cut(s)	163, 489, 738
Ecl136II	GAGCTC	1 cut(s)	471
EclXI	CGGCCG	1 cut(s)	450
Eco24I	GRGCYC	1 cut(s)	473
Eco31I	GGTCTC	2 cut(s)	326, 846
Eco47I	GGWCC	1 cut(s)	810
Eco52I	CGGCCG	1 cut(s)	450
Eco53kI	GAGCTC	1 cut(s)	471
Eco57I	CTGAAG	1 cut(s)	189
Eco88I	CYCGRG	1 cut(s)	526
EcoICRI	GAGCTC	1 cut(s)	471
EcoRII	CCWGG	1 cut(s)	29
EcoT38I	GRGCYC	1 cut(s)	473
Esp3I	CGTCTC	1 cut(s)	352
FaeI	CATG	5 cut(s)	70, 82, 511, 520, 925
FaiI	YATR	8 cut(s)	68, 80, 231, 509, 518, 555, 911, 923
FatI	CATG	5 cut(s)	66, 78, 507, 516, 921
FblI	GTMKAC	1 cut(s)	134
Fnu4HI	GCNGC	5 cut(s)	446, 667, 679, 759, 796
FokI	GGATG	2 cut(s)	545, 553
FriOI	GRGCYC	1 cut(s)	473
Fsp4HI	GCNGC	5 cut(s)	446, 667, 679, 759, 796
FspBI	CTAG	2 cut(s)	354, 762
GluI	GCNGC	5 cut(s)	446, 667, 679, 759, 796
GsuI	CTGGAG	1 cut(s)	13
HaeIII	GGCC	2 cut(s)	83, 452
HapII	CCGG	4 cut(s)	449, 458, 491, 813
Hin1II	CATG	5 cut(s)	70, 82, 511, 520, 925
HincII	GTYRAC	2 cut(s)	423, 439
HindII	GTYRAC	2 cut(s)	423, 439
HinfI	GANTC	6 cut(s)	131, 244, 338, 373, 440, 661
HpaII	CCGG	4 cut(s)	449, 458, 491, 813
HphI	GGTGA	1 cut(s)	480
Hpy166II	GTNNAC	4 cut(s)	135, 423, 439, 715
Hpy188I	TCNGA	6 cut(s)	169, 216, 263, 378, 481, 964
Hpy188III	TCNNGA	8 cut(s)	275, 317, 342, 517, 526, 569, 813, 899
Hpy8I	GTNNAC	4 cut(s)	135, 423, 439, 715
HpyAV	CCTTC	4 cut(s)	64, 163, 211, 865
HpyCH4III	ACNGT	1 cut(s)	436
HpyCH4IV	ACGT	1 cut(s)	501
HpyCH4V	TGCA	6 cut(s)	18, 269, 599, 678, 758, 795
HpyF10VI	GCNNNNNNNGC	7 cut(s)	24, 80, 454, 675, 755, 767, 792
HpyF3I	CTNAG	5 cut(s)	129, 276, 472, 850, 969
HpySE526I	ACGT	1 cut(s)	501
Hsp92II	CATG	5 cut(s)	70, 82, 511, 520, 925
Kpn2I	TCCGGA	1 cut(s)	812
KroI	GCCGGC	1 cut(s)	448
KroNI	GCCGGC	1 cut(s)	450
Kzo9I	GATC	7 cut(s)	211, 271, 362, 565, 633, 692, 913
LmnI	GCTCC	5 cut(s)	32, 127, 460, 545, 934
Lsp1109I	GCAGC	4 cut(s)	653, 690, 770, 807
LweI	GCATC	3 cut(s)	286, 510, 955
MaeI	CTAG	2 cut(s)	354, 762
MaeII	ACGT	1 cut(s)	501
MaeIII	GTNAC	4 cut(s)	62, 830, 863, 877
MalI	GATC	7 cut(s)	213, 273, 364, 567, 635, 694, 915
MboI	GATC	7 cut(s)	211, 271, 362, 565, 633, 692, 913
MfeI	CAATTG	1 cut(s)	623
MflI	RGATCY	2 cut(s)	271, 913
MhlI	GDGCHC	2 cut(s)	473, 788
MluCI	AATT	3 cut(s)	397, 623, 638
MlyI	GAGTC	3 cut(s)	140, 347, 434
MmeI	TCCRAC	1 cut(s)	504
MroI	TCCGGA	1 cut(s)	812
MroNI	GCCGGC	1 cut(s)	448
MroXI	GAANNNNTTC	1 cut(s)	257
MseI	TTAA	1 cut(s)	888
MslI	CAYNNNNRTG	1 cut(s)	83
MspI	CCGG	4 cut(s)	449, 458, 491, 813
MspR9I	CCNGG	1 cut(s)	31
MunI	CAATTG	1 cut(s)	623
MvaI	CCWGG	1 cut(s)	31
MwoI	GCNNNNNNNGC	7 cut(s)	24, 80, 454, 675, 755, 767, 792
NaeI	GCCGGC	1 cut(s)	450
NdeII	GATC	7 cut(s)	211, 271, 362, 565, 633, 692, 913
NgoMIV	GCCGGC	1 cut(s)	448
NheI	GCTAGC	1 cut(s)	761
NlaIII	CATG	5 cut(s)	70, 82, 511, 520, 925
NlaIV	GGNNCC	2 cut(s)	462, 811
NmeAIII	GCCGAG	1 cut(s)	478
NmuCI	GTSAC	3 cut(s)	62, 830, 877
NspI	RCATGY	1 cut(s)	925
PaeR7I	CTCGAG	1 cut(s)	526
PagI	TCATGA	1 cut(s)	516
PcsI	WCGNNNNNNNCGW	1 cut(s)	866
PdiI	GCCGGC	1 cut(s)	450
PdmI	GAANNNNTTC	1 cut(s)	257
PfeI	GAWTC	3 cut(s)	244, 373, 661
PflFI	GACNNNGTC	1 cut(s)	337
PkrI	GCNGC	5 cut(s)	447, 668, 680, 760, 797
PleI	GAGTC	3 cut(s)	139, 346, 434
PpsI	GAGTC	3 cut(s)	139, 346, 434
Psp124BI	GAGCTC	1 cut(s)	473
Psp6I	CCWGG	1 cut(s)	29
PspGI	CCWGG	1 cut(s)	29
PspN4I	GGNNCC	2 cut(s)	462, 811
PspPI	GGNCC	1 cut(s)	810
PstNI	CAGNNNCTG	1 cut(s)	275
PsuI	RGATCY	2 cut(s)	271, 913
PsyI	GACNNNGTC	1 cut(s)	337
RsaI	GTAC	1 cut(s)	714
RsaNI	GTAC	1 cut(s)	713
RseI	CAYNNNNRTG	1 cut(s)	83
SacI	GAGCTC	1 cut(s)	473
SaqAI	TTAA	1 cut(s)	888
SatI	GCNGC	5 cut(s)	446, 667, 679, 759, 796
Sau3AI	GATC	7 cut(s)	211, 271, 362, 565, 633, 692, 913
Sau96I	GGNCC	1 cut(s)	810
SchI	GAGTC	3 cut(s)	140, 347, 434
ScrFI	CCNGG	1 cut(s)	31
SduI	GDGCHC	2 cut(s)	473, 788
SfaNI	GCATC	3 cut(s)	286, 510, 955
Sfr274I	CTCGAG	1 cut(s)	526
SinI	GGWCC	1 cut(s)	810
SlaI	CTCGAG	1 cut(s)	526
SmiMI	CAYNNNNRTG	1 cut(s)	83
SmlI	CTYRAG	1 cut(s)	526
SmoI	CTYRAG	1 cut(s)	526
Sse9I	AATT	3 cut(s)	397, 623, 638
SsiI	CCGC	1 cut(s)	446
SspMI	CTAG	2 cut(s)	354, 762
SstI	GAGCTC	1 cut(s)	473
StyD4I	CCNGG	1 cut(s)	29
TaaI	ACNGT	1 cut(s)	436
TaiI	ACGT	1 cut(s)	504
TaqI	TCGA	5 cut(s)	341, 527, 618, 691, 869
TaqII	GACCGA	1 cut(s)	350
TasI	AATT	3 cut(s)	397, 623, 638
TauI	GCSGC	1 cut(s)	448
TfiI	GAWTC	3 cut(s)	244, 373, 661
Tru1I	TTAA	1 cut(s)	888
Tru9I	TTAA	1 cut(s)	888
TscAI	CASTG	3 cut(s)	606, 772, 958
TseFI	GTSAC	3 cut(s)	62, 830, 877
TseI	GCWGC	4 cut(s)	666, 678, 758, 795
Tsp45I	GTSAC	3 cut(s)	62, 830, 877
TspDTI	ATGAA	5 cut(s)	83, 150, 189, 422, 898
TspRI	CASTG	3 cut(s)	606, 772, 958
Tth111I	GACNNNGTC	1 cut(s)	337
VpaK11BI	GGWCC	1 cut(s)	810
XapI	RAATTY	1 cut(s)	397
XceI	RCATGY	1 cut(s)	925
XhoI	CTCGAG	1 cut(s)	526
XmiI	GTMKAC	1 cut(s)	134
XmnI	GAANNNNTTC	1 cut(s)	257
XspI	CTAG	2 cut(s)	354, 762

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.