Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0013907

Physical Location & Seq

Genomic Coordinates Forward (+)

5522213 .. 5523211

Gene Structure 999 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g05740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGAGAGGCACAGATGCAAGCTTTGCTCCAGGGCTTTTGCTAATGGCAGAGCATTGGGTGGTCACATGAAGGCTCACCTGGCAACTTTTCCTCTTCCACCCAAAACCCACCAACTCACTGAGTCCGACTCGTCTTCGTCTTCCTCCTCCGGCGAAGAACCAGAAGAAGAAGAGCAGCATTTACAAGAAGAAGAAGGAGAGGAAAAGGGTTTGATTTATGGGCTGAGAGAGAACCCAAAGAGGAGTTTCCGGCTTGCAGATCCTGAGTTTTCTTTTGTTAATTCTGGGTCGGTGATTCAAGACAGGGAGAGTGAGACCGAGTCAAGAAACCCAACTCGAAGACGATCTAAGCGGAACCGGAGATCATTCGTTGTTGTTACAGAGAATCTGCAGAGCCAGAATTTGGAGTTGAAGAAAAAAACCACGTTGACAATCTCAACACCGCCGCGTTTGGCCGAGTCTCCTCCTCCGGCGGCTGAGCCAGAACCGGTGAGCTCGGTCTCCGATACTTCTCCGGAAGAAGATGTTGCTATGTGCCTTATGATGCTGTCAAGAGATGTGCGGATGGTAAGATCAAATGATCATCAGCACGCAGATCAATTGGTTCAAGCTCAAGAACAACAGGGTAAACAAGTAGTAGCTGAGAAGTTGGACGGGATCAAATTGAAGAAACTTCGAGGGAAGAACCGGTGTGAGAAATGCAACAAACTGTTTCGATCTTTTCAAGCAATGTGCGGGCACAAAAAGATTTGTTTTCGCAACGAGGAGGAAGCAATCAACAATGCAGGTGGTGAGAAGCTGTTTGAGTGCCCGTTTTGTTACAAAATATTTGGCTCCGGTCAAGCTCTCGGCGGTCACAAAAGATCTCACCTTTCGGGTTCTTCAAGATCAATGGTTTTATCAGTGGCTGCAAAAACTGAAGTTAGAGAGGGTTTCATAGATCTCAACCTGCCTGCTCCGGAAGAAGATGATGATTTCAGCGTGCTATCGGATGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

333

Amino Acids

37.16

Weight (kDa)

6.58

Isoelectric Point (pI)

74.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	3 - 27	1.2e-06	C2H2-type zinc finger
zf-C2H2_6	PF13912	268 - 291	4.8e-09	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013907)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16610
fragaria_vesca	FvH4_5g19030
malus_domestica	MD04G1063600.v1.1 MD06G1057700.v1.1
prunus_persica	Prupe.5G068600_v2.0.a1
pyrus_communis	pycom04g05740 pycom06g04850
rosa_chinensis	RchiOBHm_Chr7g0203441
rosa_laevigata	RLG00000003528
rosa_multiflora	Rmu_ssc0000485.1_g000001
rosa_roxburghii	Rroxscaffold_3G00253810
rosa_rugosa	Rorug07G0076000
rosa_samantha	Rh7AG205600 Rh7BG205400 Rh7CG218300 Rh7DG212700
rosa_wichuraiana	Rw7G017960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	776
Acc36I	ACCTGC	2 cut(s)	776, 957
AccB7I	CCANNNNNTGG	1 cut(s)	403
AccII	CGCG	1 cut(s)	448
AccIII	TCCGGA	2 cut(s)	514, 958
AciI	CCGC	7 cut(s)	352, 443, 446, 473, 562, 735, 852
AclWI	GGATC	2 cut(s)	254, 665
AcoI	YGGCCR	1 cut(s)	453
AcsI	RAATTY	1 cut(s)	400
AcuI	CTGAAG	1 cut(s)	939
AfiI	CCNNNNNNNGG	1 cut(s)	403
AgeI	ACCGGT	2 cut(s)	487, 687
AgsI	TTSAA	6 cut(s)	299, 412, 608, 667, 725, 885
AjnI	CCWGG	2 cut(s)	29, 78
AluBI	AGCT	6 cut(s)	22, 495, 611, 641, 799, 845
AluI	AGCT	6 cut(s)	22, 495, 611, 641, 799, 845
Alw21I	GWGCWC	1 cut(s)	497
Alw26I	GTCTC	3 cut(s)	308, 465, 505
AlwI	GGATC	2 cut(s)	254, 665
AlwNI	CAGNNNCTG	2 cut(s)	263, 908
Aor13HI	TCCGGA	2 cut(s)	514, 958
AoxI	GGCC	1 cut(s)	453
ApeKI	GCWGC	2 cut(s)	175, 908
ApoI	RAATTY	1 cut(s)	400
AsiGI	ACCGGT	2 cut(s)	487, 687
AsuHPI	GGTGA	5 cut(s)	68, 304, 502, 803, 860
BaeGI	GKGCMC	2 cut(s)	741, 812
BanII	GRGCYC	1 cut(s)	497
BbsI	GAAGAC	3 cut(s)	126, 132, 346
Bbv12I	GWGCWC	1 cut(s)	497
BbvI	GCAGC	2 cut(s)	187, 895
BccI	CCATC	1 cut(s)	559
BciT130I	CCWGG	2 cut(s)	31, 80
BclI	TGATCA	1 cut(s)	580
BcoDI	GTCTC	3 cut(s)	308, 465, 505
BfmI	CTRYAG	1 cut(s)	389
BfuAI	ACCTGC	2 cut(s)	776, 957
BglII	AGATCT	2 cut(s)	863, 940
BisI	GCNGC	4 cut(s)	176, 446, 474, 909
BlpI	GCTNAGC	1 cut(s)	477
BlsI	GCNGC	4 cut(s)	177, 447, 475, 910
Bme1390I	CCNGG	2 cut(s)	31, 80
BmiI	GGNNCC	2 cut(s)	356, 835
BmrFI	CCNGG	2 cut(s)	31, 80
BmsI	GCATC	3 cut(s)	5, 534, 982
BpiI	GAAGAC	3 cut(s)	126, 132, 346
BplI	GAGNNNNNCTC	2 cut(s)	113, 145
BpmI	CTGGAG	1 cut(s)	13
Bpu1102I	GCTNAGC	1 cut(s)	477
BpuEI	CTTGAG	1 cut(s)	597
BsaI	GGTCTC	2 cut(s)	308, 505
BsaJI	CCNNGG	1 cut(s)	30
BsaWI	WCCGGW	6 cut(s)	357, 487, 514, 687, 836, 958
Bsc4I	CCNNNNNNNGG	1 cut(s)	403
Bse118I	RCCGGY	2 cut(s)	487, 687
Bse3DI	GCAATG	1 cut(s)	735
BseAI	TCCGGA	2 cut(s)	514, 958
BseBI	CCWGG	2 cut(s)	31, 80
BseDI	CCNNGG	1 cut(s)	30
BseGI	GGATG	2 cut(s)	570, 997
BseLI	CCNNNNNNNGG	1 cut(s)	403
BseMI	GCAATG	1 cut(s)	735
BseMII	CTCAG	5 cut(s)	111, 215, 255, 468, 633
BseRI	GAGGAG	5 cut(s)	136, 256, 453, 456, 779
BseSI	GKGCMC	2 cut(s)	741, 812
BseXI	GCAGC	2 cut(s)	187, 895
Bsh1236I	CGCG	1 cut(s)	448
BshFI	GGCC	1 cut(s)	455
BshTI	ACCGGT	2 cut(s)	487, 687
BsiHKAI	GWGCWC	1 cut(s)	497
BsiSI	CCGG	9 cut(s)	150, 250, 358, 470, 488, 515, 688, 837, 959
BslI	CCNNNNNNNGG	1 cut(s)	403
BsmAI	GTCTC	3 cut(s)	308, 465, 505
BsnI	GGCC	1 cut(s)	455
Bso31I	GGTCTC	2 cut(s)	308, 505
Bsp1286I	GDGCHC	3 cut(s)	497, 741, 812
Bsp13I	TCCGGA	2 cut(s)	514, 958
Bsp1720I	GCTNAGC	1 cut(s)	477
BspACI	CCGC	7 cut(s)	352, 443, 446, 473, 562, 735, 852
BspANI	GGCC	1 cut(s)	455
BspCNI	CTCAG	5 cut(s)	112, 216, 256, 469, 634
BspEI	TCCGGA	2 cut(s)	514, 958
BspFNI	CGCG	1 cut(s)	448
BspLI	GGNNCC	2 cut(s)	356, 835
BspMAI	CTGCAG	1 cut(s)	393
BspMI	ACCTGC	2 cut(s)	776, 957
BspPI	GGATC	2 cut(s)	254, 665
BspQI	GCTCTTC	1 cut(s)	165
BspTNI	GGTCTC	2 cut(s)	308, 505
BsrDI	GCAATG	1 cut(s)	735
BsrFI	RCCGGY	2 cut(s)	487, 687
BssAI	RCCGGY	2 cut(s)	487, 687
BssECI	CCNNGG	1 cut(s)	30
Bst2UI	CCWGG	2 cut(s)	31, 80
Bst4CI	ACNGT	1 cut(s)	711
Bst6I	CTCTTC	2 cut(s)	99, 165
BstAPI	GCANNNNNTGC	1 cut(s)	24
BstC8I	GCNNGC	6 cut(s)	20, 255, 591, 737, 954, 983
BstDEI	CTNAG	6 cut(s)	120, 224, 264, 348, 477, 642
BstF5I	GGATG	2 cut(s)	570, 997
BstFNI	CGCG	1 cut(s)	448
BstMAI	GTCTC	3 cut(s)	308, 465, 505
BstMWI	GCNNNNNNNGC	2 cut(s)	24, 80
BstNI	CCWGG	2 cut(s)	31, 80
BstSCI	CCNGG	2 cut(s)	29, 78
BstSFI	CTRYAG	1 cut(s)	389
BstSLI	GKGCMC	2 cut(s)	741, 812
BstUI	CGCG	1 cut(s)	448
BstV1I	GCAGC	2 cut(s)	187, 895
BstV2I	GAAGAC	3 cut(s)	126, 132, 346
BstX2I	RGATCY	3 cut(s)	259, 863, 940
BstYI	RGATCY	3 cut(s)	259, 863, 940
BsuRI	GGCC	1 cut(s)	455
BtsCI	GGATG	2 cut(s)	570, 997
BtsIMutI	CAGTG	2 cut(s)	117, 909
BveI	ACCTGC	2 cut(s)	776, 957
Cac8I	GCNNGC	6 cut(s)	20, 255, 591, 737, 954, 983
CaiI	CAGNNNCTG	2 cut(s)	263, 908
Cfr10I	RCCGGY	2 cut(s)	487, 687
CspAI	ACCGGT	2 cut(s)	487, 687
CspCI	CAANNNNNGTGG	2 cut(s)	769, 804
CviAII	CATG	1 cut(s)	67
DdeI	CTNAG	6 cut(s)	120, 224, 264, 348, 477, 642
EaeI	YGGCCR	1 cut(s)	453
Eam1104I	CTCTTC	2 cut(s)	99, 165
EarI	CTCTTC	2 cut(s)	99, 165
Ecl136II	GAGCTC	1 cut(s)	495
Eco24I	GRGCYC	1 cut(s)	497
Eco31I	GGTCTC	2 cut(s)	308, 505
Eco53kI	GAGCTC	1 cut(s)	495
Eco57I	CTGAAG	1 cut(s)	939
EcoICRI	GAGCTC	1 cut(s)	495
EcoRII	CCWGG	2 cut(s)	29, 78
EcoT38I	GRGCYC	1 cut(s)	497
FaeI	CATG	1 cut(s)	70
FaiI	YATR	5 cut(s)	68, 219, 533, 542, 938
FatI	CATG	1 cut(s)	66
FauI	CCCGC	1 cut(s)	728
FbaI	TGATCA	1 cut(s)	580
Fnu4HI	GCNGC	4 cut(s)	176, 446, 474, 909
FokI	GGATG	1 cut(s)	577
FriOI	GRGCYC	1 cut(s)	497
Fsp4HI	GCNGC	4 cut(s)	176, 446, 474, 909
GluI	GCNGC	4 cut(s)	176, 446, 474, 909
GsuI	CTGGAG	1 cut(s)	13
HaeIII	GGCC	1 cut(s)	455
HapII	CCGG	9 cut(s)	150, 250, 358, 470, 488, 515, 688, 837, 959
Hin1II	CATG	1 cut(s)	70
HincII	GTYRAC	1 cut(s)	429
HindII	GTYRAC	1 cut(s)	429
HindIII	AAGCTT	1 cut(s)	20
HinfI	GANTC	6 cut(s)	122, 128, 295, 320, 385, 458
HpaII	CCGG	9 cut(s)	150, 250, 358, 470, 488, 515, 688, 837, 959
HphI	GGTGA	5 cut(s)	68, 304, 502, 803, 860
Hpy166II	GTNNAC	2 cut(s)	429, 629
Hpy188I	TCNGA	3 cut(s)	127, 505, 991
Hpy188III	TCNNGA	8 cut(s)	263, 299, 324, 515, 552, 614, 885, 959
Hpy8I	GTNNAC	2 cut(s)	429, 629
HpyAV	CCTTC	2 cut(s)	64, 188
HpyCH4III	ACNGT	1 cut(s)	711
HpyCH4IV	ACGT	1 cut(s)	425
HpyCH4V	TGCA	6 cut(s)	18, 257, 391, 702, 785, 911
HpyF10VI	GCNNNNNNNGC	2 cut(s)	24, 80
HpyF3I	CTNAG	6 cut(s)	120, 224, 264, 348, 477, 642
HpySE526I	ACGT	1 cut(s)	425
Hsp92II	CATG	1 cut(s)	70
Kpn2I	TCCGGA	2 cut(s)	514, 958
Ksp22I	TGATCA	1 cut(s)	580
LguI	GCTCTTC	1 cut(s)	165
LmnI	GCTCC	3 cut(s)	32, 839, 961
Lsp1109I	GCAGC	2 cut(s)	187, 895
LweI	GCATC	3 cut(s)	5, 534, 982
MaeII	ACGT	1 cut(s)	425
MaeIII	GTNAC	4 cut(s)	62, 376, 818, 854
MfeI	CAATTG	1 cut(s)	599
MflI	RGATCY	3 cut(s)	259, 863, 940
MhlI	GDGCHC	3 cut(s)	497, 741, 812
MluCI	AATT	4 cut(s)	280, 400, 599, 662
MlyI	GAGTC	4 cut(s)	122, 131, 329, 467
MmeI	TCCRAC	2 cut(s)	150, 630
MroI	TCCGGA	2 cut(s)	514, 958
MseI	TTAA	1 cut(s)	279
MspI	CCGG	9 cut(s)	150, 250, 358, 470, 488, 515, 688, 837, 959
MspR9I	CCNGG	2 cut(s)	31, 80
MunI	CAATTG	1 cut(s)	599
MvaI	CCWGG	2 cut(s)	31, 80
MvnI	CGCG	1 cut(s)	448
MwoI	GCNNNNNNNGC	2 cut(s)	24, 80
NlaIII	CATG	1 cut(s)	70
NlaIV	GGNNCC	2 cut(s)	356, 835
NmeAIII	GCCGAG	2 cut(s)	481, 828
NmuCI	GTSAC	2 cut(s)	62, 854
PaqCI	CACCTGC	1 cut(s)	776
PciSI	GCTCTTC	1 cut(s)	165
PfeI	GAWTC	2 cut(s)	295, 385
PflFI	GACNNNGTC	1 cut(s)	319
PflMI	CCANNNNNTGG	1 cut(s)	403
PinAI	ACCGGT	2 cut(s)	487, 687
PkrI	GCNGC	4 cut(s)	177, 447, 475, 910
PleI	GAGTC	4 cut(s)	122, 130, 328, 466
PpsI	GAGTC	4 cut(s)	122, 130, 328, 466
Psp124BI	GAGCTC	1 cut(s)	497
Psp6I	CCWGG	2 cut(s)	29, 78
PspGI	CCWGG	2 cut(s)	29, 78
PspN4I	GGNNCC	2 cut(s)	356, 835
PstI	CTGCAG	1 cut(s)	393
PstNI	CAGNNNCTG	2 cut(s)	263, 908
PsuI	RGATCY	3 cut(s)	259, 863, 940
PsyI	GACNNNGTC	1 cut(s)	319
SacI	GAGCTC	1 cut(s)	497
SapI	GCTCTTC	1 cut(s)	165
SaqAI	TTAA	1 cut(s)	279
SatI	GCNGC	4 cut(s)	176, 446, 474, 909
SchI	GAGTC	4 cut(s)	122, 131, 329, 467
ScrFI	CCNGG	2 cut(s)	31, 80
SduI	GDGCHC	3 cut(s)	497, 741, 812
SfaNI	GCATC	3 cut(s)	5, 534, 982
SfcI	CTRYAG	1 cut(s)	389
SmlI	CTYRAG	1 cut(s)	612
SmoI	CTYRAG	1 cut(s)	612
Sse9I	AATT	4 cut(s)	280, 400, 599, 662
SsiI	CCGC	7 cut(s)	352, 443, 446, 473, 562, 735, 852
SspI	AATATT	1 cut(s)	828
SstI	GAGCTC	1 cut(s)	497
StyD4I	CCNGG	2 cut(s)	29, 78
TaaI	ACNGT	1 cut(s)	711
TaiI	ACGT	1 cut(s)	428
TaqI	TCGA	3 cut(s)	337, 676, 715
TaqII	GACCGA	2 cut(s)	332, 487
TasI	AATT	4 cut(s)	280, 400, 599, 662
TauI	GCSGC	2 cut(s)	448, 476
TfiI	GAWTC	2 cut(s)	295, 385
Tru1I	TTAA	1 cut(s)	279
Tru9I	TTAA	1 cut(s)	279
TscAI	CASTG	2 cut(s)	124, 909
TseFI	GTSAC	2 cut(s)	62, 854
TseI	GCWGC	2 cut(s)	175, 908
Tsp45I	GTSAC	2 cut(s)	62, 854
TspDTI	ATGAA	2 cut(s)	83, 925
TspRI	CASTG	2 cut(s)	124, 909
Tth111I	GACNNNGTC	1 cut(s)	319
Van91I	CCANNNNNTGG	1 cut(s)	403
XapI	RAATTY	1 cut(s)	400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.