Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0013907

Physical Location & Seq

Genomic Coordinates Forward (+)

8272251 .. 8273751

Gene Structure 1501 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G068600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGAGAGGCACAAATGCAAGCTCTGCGCTAGGACTTTTGCTAATGGCAGAGCATTGGGTGGACACATGAAGGCTCACTTGGCCACTCTTCCTCTTCCCCCAAAGACCCAGCAACTCACTGAGTCAGCCTCGTCTTCATCTTCATCTTCAGGTGAGGAACCAGAACCAGAACAAGAACAGAAACTACAGGAAGAAGAAGAAGAAGAGAAGGGTTTGGTGTATGGGTTGAGAGAGAACCCAAAGAGGAGTTTCAGGCTTGCAGATCCTGAGTTCTCTTTTGCAGTTGATGCTGGCTCTGTCATTCAAGACAGAGAGAGCGAGACCGAGTCAAAAAACCCAACTCGGAGACGATCCAAGCGGAATCGGAGATCATTTGTTGTTGTTACAGAGAATCAGAGGCAGCAGCAGCAGCAGCAGAGCCAGAAATTGGAGTTGCAGAAAAAACCCATGTTGACAAATTCAACACAACCCAGTTTGGCTGAGTCAATGGCCGAGCCTGAACCGCTGAGCTCGGTCTCTGATACTTCTCCTGAAGAAGACGTTGCTATGTGTCTTATGATGCTCTCAAGAGATGTATGGATGAGAAGAACAAATGATCAGCAGCAAGCAGATCAATCAGACCAAGATCAAGAGCATGGTAAGCAAGCAGTGGAGAAATTGGAGGGGATCAAATTGAAGAAAGTTCGAGGCAAGAATCGGTGCGAGAAATGCAGCAAGCTATTTCGATCTTATCAAGCAATGTGCGGACATAAAAAAATTTGCTTTCGCAACGAAGACGAAGCAATCAACAATGCAGGTGGTGAGAAGTTATTTGAGTGCCCGTTTTGTTGCAAAATTTTTGGTTCTGGCCAAGCTCTTGGTGGCCACAAAAGATCTCACCTTTCGGGCTCTTCGAGATCAATGGCTGCTGGAAAAACTGAAGTTCGAGAGAGTTTCATAGATCTCAACCTGCCAGCTCCTCAGGAAGAAGATGATTTTAGCGTGCTATCTGATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

333

Amino Acids

37.34

Weight (kDa)

6.44

Isoelectric Point (pI)

74.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013907)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16610
fragaria_vesca	FvH4_5g19030
malus_domestica	MD04G1063600.v1.1 MD06G1057700.v1.1
prunus_persica	Prupe.5G068600_v2.0.a1
pyrus_communis	pycom04g05740 pycom06g04850
rosa_chinensis	RchiOBHm_Chr7g0203441
rosa_laevigata	RLG00000003528
rosa_multiflora	Rmu_ssc0000485.1_g000001
rosa_roxburghii	Rroxscaffold_3G00253810
rosa_rugosa	Rorug07G0076000
rosa_samantha	Rh7AG205600 Rh7BG205400 Rh7CG218300 Rh7DG212700
rosa_wichuraiana	Rw7G017960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	785
Acc36I	ACCTGC	2 cut(s)	785, 957
AccB7I	CCANNNNNTGG	1 cut(s)	427
AciI	CCGC	3 cut(s)	358, 503, 744
AclWI	GGATC	3 cut(s)	257, 345, 674
AcoI	YGGCCR	4 cut(s)	81, 489, 847, 862
AcsI	RAATTY	3 cut(s)	457, 756, 834
AcuI	CTGAAG	3 cut(s)	132, 552, 939
AfiI	CCNNNNNNNGG	1 cut(s)	427
AgsI	TTSAA	3 cut(s)	305, 462, 676
AjuI	GAANNNNNNNTTGG	2 cut(s)	62, 94
AluBI	AGCT	5 cut(s)	22, 510, 718, 854, 956
AluI	AGCT	5 cut(s)	22, 510, 718, 854, 956
Alw21I	GWGCWC	1 cut(s)	512
Alw26I	GTCTC	3 cut(s)	314, 340, 520
AlwI	GGATC	3 cut(s)	257, 345, 674
AlwNI	CAGNNNCTG	1 cut(s)	266
AoxI	GGCC	4 cut(s)	81, 489, 847, 862
ApeKI	GCWGC	8 cut(s)	400, 403, 406, 409, 412, 601, 711, 905
ApoI	RAATTY	3 cut(s)	457, 756, 834
AspLEI	GCGC	1 cut(s)	29
AsuHPI	GGTGA	3 cut(s)	164, 812, 869
AxyI	CCTNAGG	1 cut(s)	960
BaeGI	GKGCMC	1 cut(s)	821
BalI	TGGCCA	3 cut(s)	83, 849, 864
BanII	GRGCYC	2 cut(s)	512, 890
BbsI	GAAGAC	3 cut(s)	126, 543, 780
Bbv12I	GWGCWC	1 cut(s)	512
BbvI	GCAGC	8 cut(s)	412, 415, 418, 421, 424, 613, 723, 892
BclI	TGATCA	1 cut(s)	595
BcoDI	GTCTC	3 cut(s)	314, 340, 520
BfaI	CTAG	1 cut(s)	30
BfmI	CTRYAG	1 cut(s)	185
BfuAI	ACCTGC	2 cut(s)	785, 957
BglII	AGATCT	2 cut(s)	872, 940
BisI	GCNGC	8 cut(s)	401, 404, 407, 410, 413, 602, 712, 906
BlpI	GCTNAGC	1 cut(s)	506
BlsI	GCNGC	8 cut(s)	402, 405, 408, 411, 414, 603, 713, 907
BmiI	GGNNCC	1 cut(s)	159
BmrI	ACTGGG	1 cut(s)	465
BmsI	GCATC	3 cut(s)	277, 549, 982
BmuI	ACTGGG	1 cut(s)	465
BpiI	GAAGAC	3 cut(s)	126, 543, 780
BplI	GAGNNNNNCTC	2 cut(s)	113, 145
Bpu1102I	GCTNAGC	1 cut(s)	506
BpuEI	CTTGAG	1 cut(s)	550
BsaI	GGTCTC	2 cut(s)	314, 520
Bsc4I	CCNNNNNNNGG	1 cut(s)	427
Bse1I	ACTGG	1 cut(s)	471
Bse21I	CCTNAGG	1 cut(s)	960
Bse3DI	GCAATG	1 cut(s)	744
BseGI	GGATG	1 cut(s)	585
BseLI	CCNNNNNNNGG	1 cut(s)	427
BseMI	GCAATG	1 cut(s)	744
BseMII	CTCAG	5 cut(s)	111, 258, 471, 497, 974
BseNI	ACTGG	1 cut(s)	471
BseRI	GAGGAG	2 cut(s)	259, 948
BseSI	GKGCMC	1 cut(s)	821
BseXI	GCAGC	8 cut(s)	412, 415, 418, 421, 424, 613, 723, 892
BseYI	CCCAGC	1 cut(s)	108
BshFI	GGCC	4 cut(s)	83, 491, 849, 864
BsiHKAI	GWGCWC	1 cut(s)	512
BslI	CCNNNNNNNGG	1 cut(s)	427
BsmAI	GTCTC	3 cut(s)	314, 340, 520
BsmBI	CGTCTC	1 cut(s)	340
BsnI	GGCC	4 cut(s)	83, 491, 849, 864
Bso31I	GGTCTC	2 cut(s)	314, 520
Bsp1286I	GDGCHC	3 cut(s)	512, 821, 890
Bsp1720I	GCTNAGC	1 cut(s)	506
BspACI	CCGC	3 cut(s)	358, 503, 744
BspANI	GGCC	4 cut(s)	83, 491, 849, 864
BspCNI	CTCAG	5 cut(s)	112, 259, 472, 498, 973
BspLI	GGNNCC	1 cut(s)	159
BspMI	ACCTGC	2 cut(s)	785, 957
BspPI	GGATC	3 cut(s)	257, 345, 674
BspQI	GCTCTTC	1 cut(s)	895
BspTNI	GGTCTC	2 cut(s)	314, 520
BsrDI	GCAATG	1 cut(s)	744
BsrI	ACTGG	1 cut(s)	471
Bst6I	CTCTTC	4 cut(s)	93, 99, 198, 895
BstAPI	GCANNNNNTGC	2 cut(s)	24, 287
BstC8I	GCNNGC	8 cut(s)	20, 258, 292, 606, 645, 716, 954, 983
BstDEI	CTNAG	5 cut(s)	120, 267, 480, 506, 960
BstF5I	GGATG	1 cut(s)	585
BstHHI	GCGC	1 cut(s)	29
BstMAI	GTCTC	3 cut(s)	314, 340, 520
BstMWI	GCNNNNNNNGC	9 cut(s)	24, 80, 287, 406, 409, 412, 502, 640, 708
BstSFI	CTRYAG	1 cut(s)	185
BstSLI	GKGCMC	1 cut(s)	821
BstV1I	GCAGC	8 cut(s)	412, 415, 418, 421, 424, 613, 723, 892
BstV2I	GAAGAC	3 cut(s)	126, 543, 780
BstX2I	RGATCY	3 cut(s)	262, 872, 940
BstXI	CCANNNNNNTGG	1 cut(s)	857
BstYI	RGATCY	3 cut(s)	262, 872, 940
Bsu36I	CCTNAGG	1 cut(s)	960
BsuRI	GGCC	4 cut(s)	83, 491, 849, 864
BtsCI	GGATG	1 cut(s)	585
BtsI	GCAGTG	1 cut(s)	654
BtsIMutI	CAGTG	2 cut(s)	117, 654
BveI	ACCTGC	2 cut(s)	785, 957
Cac8I	GCNNGC	8 cut(s)	20, 258, 292, 606, 645, 716, 954, 983
CaiI	CAGNNNCTG	1 cut(s)	266
CfoI	GCGC	1 cut(s)	29
CspCI	CAANNNNNGTGG	2 cut(s)	778, 813
CviAII	CATG	3 cut(s)	67, 448, 635
DdeI	CTNAG	5 cut(s)	120, 267, 480, 506, 960
EaeI	YGGCCR	4 cut(s)	81, 489, 847, 862
Eam1104I	CTCTTC	4 cut(s)	93, 99, 198, 895
EarI	CTCTTC	4 cut(s)	93, 99, 198, 895
Ecl136II	GAGCTC	1 cut(s)	510
Eco24I	GRGCYC	2 cut(s)	512, 890
Eco31I	GGTCTC	2 cut(s)	314, 520
Eco53kI	GAGCTC	1 cut(s)	510
Eco57I	CTGAAG	3 cut(s)	132, 552, 939
Eco81I	CCTNAGG	1 cut(s)	960
EcoICRI	GAGCTC	1 cut(s)	510
EcoT38I	GRGCYC	2 cut(s)	512, 890
Esp3I	CGTCTC	1 cut(s)	340
FaeI	CATG	3 cut(s)	70, 451, 638
FaiI	YATR	9 cut(s)	68, 222, 449, 548, 557, 577, 636, 750, 938
FalI	AAGNNNNNCTT	2 cut(s)	62, 94
FatI	CATG	3 cut(s)	66, 447, 634
FbaI	TGATCA	1 cut(s)	595
Fnu4HI	GCNGC	8 cut(s)	401, 404, 407, 410, 413, 602, 712, 906
FokI	GGATG	1 cut(s)	592
FriOI	GRGCYC	2 cut(s)	512, 890
Fsp4HI	GCNGC	8 cut(s)	401, 404, 407, 410, 413, 602, 712, 906
FspBI	CTAG	1 cut(s)	30
GlaI	GCGC	1 cut(s)	28
GluI	GCNGC	8 cut(s)	401, 404, 407, 410, 413, 602, 712, 906
GsaI	CCCAGC	1 cut(s)	112
HaeIII	GGCC	4 cut(s)	83, 491, 849, 864
HhaI	GCGC	1 cut(s)	29
Hin1II	CATG	3 cut(s)	70, 451, 638
Hin6I	GCGC	1 cut(s)	27
HinP1I	GCGC	1 cut(s)	27
HincII	GTYRAC	1 cut(s)	453
HindII	GTYRAC	1 cut(s)	453
HinfI	GANTC	6 cut(s)	122, 326, 361, 391, 482, 694
HphI	GGTGA	3 cut(s)	164, 812, 869
Hpy166II	GTNNAC	2 cut(s)	62, 453
Hpy188I	TCNGA	6 cut(s)	345, 366, 396, 520, 619, 991
Hpy188III	TCNNGA	8 cut(s)	266, 305, 530, 567, 629, 894, 926, 962
Hpy8I	GTNNAC	2 cut(s)	62, 453
HpyAV	CCTTC	2 cut(s)	64, 202
HpyCH4IV	ACGT	1 cut(s)	540
HpyCH4V	TGCA	7 cut(s)	18, 260, 281, 436, 711, 794, 831
HpyF10VI	GCNNNNNNNGC	9 cut(s)	24, 80, 287, 406, 409, 412, 502, 640, 708
HpyF3I	CTNAG	5 cut(s)	120, 267, 480, 506, 960
HpySE526I	ACGT	1 cut(s)	540
Hsp92II	CATG	3 cut(s)	70, 451, 638
HspAI	GCGC	1 cut(s)	27
Ksp22I	TGATCA	1 cut(s)	595
LguI	GCTCTTC	1 cut(s)	895
LmnI	GCTCC	1 cut(s)	961
Lsp1109I	GCAGC	8 cut(s)	412, 415, 418, 421, 424, 613, 723, 892
LweI	GCATC	3 cut(s)	277, 549, 982
MaeI	CTAG	1 cut(s)	30
MaeII	ACGT	1 cut(s)	540
MaeIII	GTNAC	1 cut(s)	382
MflI	RGATCY	3 cut(s)	262, 872, 940
MhlI	GDGCHC	3 cut(s)	512, 821, 890
MlsI	TGGCCA	3 cut(s)	83, 849, 864
MluCI	AATT	6 cut(s)	425, 457, 656, 671, 756, 834
MluNI	TGGCCA	3 cut(s)	83, 849, 864
MlyI	GAGTC	3 cut(s)	131, 335, 491
MnlI	CCTC	8 cut(s)	102, 139, 148, 237, 390, 655, 680, 969
Mox20I	TGGCCA	3 cut(s)	83, 849, 864
MscI	TGGCCA	3 cut(s)	83, 849, 864
Msp20I	TGGCCA	3 cut(s)	83, 849, 864
MspA1I	CMGCKG	1 cut(s)	505
MwoI	GCNNNNNNNGC	9 cut(s)	24, 80, 287, 406, 409, 412, 502, 640, 708
NlaIII	CATG	3 cut(s)	70, 451, 638
NlaIV	GGNNCC	1 cut(s)	159
NmeAIII	GCCGAG	1 cut(s)	517
PaqCI	CACCTGC	1 cut(s)	785
PciSI	GCTCTTC	1 cut(s)	895
PcsI	WCGNNNNNNNCGW	1 cut(s)	890
PfeI	GAWTC	3 cut(s)	361, 391, 694
PflFI	GACNNNGTC	1 cut(s)	325
PflMI	CCANNNNNTGG	1 cut(s)	427
PkrI	GCNGC	8 cut(s)	402, 405, 408, 411, 414, 603, 713, 907
PleI	GAGTC	3 cut(s)	130, 334, 490
PpsI	GAGTC	3 cut(s)	130, 334, 490
Psp124BI	GAGCTC	1 cut(s)	512
PspFI	CCCAGC	1 cut(s)	108
PspN4I	GGNNCC	1 cut(s)	159
PsrI	GAACNNNNNNTAC	2 cut(s)	168, 200
PstNI	CAGNNNCTG	1 cut(s)	266
PsuI	RGATCY	3 cut(s)	262, 872, 940
PsyI	GACNNNGTC	1 cut(s)	325
SacI	GAGCTC	1 cut(s)	512
SapI	GCTCTTC	1 cut(s)	895
SatI	GCNGC	8 cut(s)	401, 404, 407, 410, 413, 602, 712, 906
SchI	GAGTC	3 cut(s)	131, 335, 491
SduI	GDGCHC	3 cut(s)	512, 821, 890
SfaNI	GCATC	3 cut(s)	277, 549, 982
SfcI	CTRYAG	1 cut(s)	185
SmlI	CTYRAG	1 cut(s)	565
SmoI	CTYRAG	1 cut(s)	565
Sse9I	AATT	6 cut(s)	425, 457, 656, 671, 756, 834
SsiI	CCGC	3 cut(s)	358, 503, 744
SspMI	CTAG	1 cut(s)	30
SstI	GAGCTC	1 cut(s)	512
TaiI	ACGT	1 cut(s)	543
TaqI	TCGA	4 cut(s)	685, 724, 893, 925
TaqII	GACCGA	2 cut(s)	338, 502
TasI	AATT	6 cut(s)	425, 457, 656, 671, 756, 834
TfiI	GAWTC	3 cut(s)	361, 391, 694
TscAI	CASTG	2 cut(s)	124, 654
TseI	GCWGC	8 cut(s)	400, 403, 406, 409, 412, 601, 711, 905
TspDTI	ATGAA	4 cut(s)	83, 126, 132, 925
TspRI	CASTG	2 cut(s)	124, 654
Tth111I	GACNNNGTC	1 cut(s)	325
Van91I	CCANNNNNTGG	1 cut(s)	427
XapI	RAATTY	3 cut(s)	457, 756, 834
XcmI	CCANNNNNNNNNTGG	1 cut(s)	857
XspI	CTAG	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.