Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0013907

Physical Location & Seq

Genomic Coordinates Reverse (-)

20508808 .. 20510708

Gene Structure 1901 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG212700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGAGAAGCACCAATGCAAGCTCTGCGCTAGGATTTTCAACAATGGCAGAGCATTGGGTGGTCACATGAAGGCTCACATGGCCGTCCTTCCTCTCCCTCCAAAGACCCACCAACAACTCGCTGCTGCTGAGTCTACTCACTCTGCCTCGTCCTCCTCTTCGTCTTCTGAAGATGAACAGCAAAAGGGTAGTCATGAACAAGAGGAGGAAGATCAGAAGGCTTTGGCTTATGTGTTGAGGGAGAATCCCAAGAAAAGTTTCAGACTTGCAGATCCTGAGTTCTCTTTTCAGGTTGATGCTGGGTCTGTAGTTATTCAAGACAGGGAGAGCGAGACCGAGTCGAGAAACCCAACTCGGAGACGATCCAAGCGGAATCGGAGGATGAGTTTTACAGAGAAATTGGAGCTGAAGAAACCCAAGTTGACAACTTCAACGGTTGACTCGCCGCCGGCCGAGCCGGAGCCGGAGCCGTTGAGCTCAGTCTCCGACACTTCACCGGAAGAGGATGTTGCCATGTGCCTCATGTTGCTGTCGAGGGATGTGTGGATGAGAACAAACTGTGGAGAAGCAGATCAAGAACAAAATGGGAAAGAGGTGGTGGTTGCAGTGAAAGATGAGGAGTTCGAGCAATTGGAGGAGATCAAATTGAAGAAAGTGAGAGGCAAGAATCGGTGTGACAAATGCAGTAAGCTCTTTCGATCTCATCAAGCAATGTGCGTGCACAGGAAGATTTGCTTTCGAAGCGAAGCAGAGGCCAACAATGCAGCTAGCAGTGCCAGTCTGTTCAAGTGCCCATTTTGCAGCAAGATTTTTGGGTCCGGACAAGCTCTTGGCGGTCACAAAAGGTCTCATCTTTCTGGCACTGCGGGTTACTCGAGAGTCGTCACAAAAGTTAAAGAAGTTCGGGAGAGTTTCATAGATCTCAACATGCCTGCTCCGCAAGAAGAAGATGATTTCAGTGTTGTTTCCGATGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

325

Amino Acids

36.31

Weight (kDa)

6.81

Isoelectric Point (pI)

58.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	262 - 285	2.2e-09	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013907)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16610
fragaria_vesca	FvH4_5g19030
malus_domestica	MD04G1063600.v1.1 MD06G1057700.v1.1
prunus_persica	Prupe.5G068600_v2.0.a1
pyrus_communis	pycom04g05740 pycom06g04850
rosa_chinensis	RchiOBHm_Chr7g0203441
rosa_laevigata	RLG00000003528
rosa_multiflora	Rmu_ssc0000485.1_g000001
rosa_roxburghii	Rroxscaffold_3G00253810
rosa_rugosa	Rorug07G0076000
rosa_samantha	Rh7AG205600 Rh7BG205400 Rh7CG218300 Rh7DG212700
rosa_wichuraiana	Rw7G017960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	134
AccIII	TCCGGA	1 cut(s)	818
AciI	CCGC	5 cut(s)	370, 446, 834, 866, 938
AclWI	GGATC	2 cut(s)	266, 357
AcoI	YGGCCR	2 cut(s)	81, 450
AcuI	CTGAAG	2 cut(s)	189, 428
AgsI	TTSAA	5 cut(s)	40, 317, 432, 649, 787
AjuI	GAANNNNNNNTTGG	2 cut(s)	242, 274
AluBI	AGCT	6 cut(s)	22, 406, 477, 691, 767, 827
AluI	AGCT	6 cut(s)	22, 406, 477, 691, 767, 827
Alw21I	GWGCWC	2 cut(s)	479, 723
Alw26I	GTCTC	4 cut(s)	326, 352, 487, 852
Alw44I	GTGCAC	1 cut(s)	719
AlwI	GGATC	2 cut(s)	266, 357
AlwNI	CAGNNNCTG	1 cut(s)	275
Ama87I	CYCGRG	1 cut(s)	874
Aor13HI	TCCGGA	1 cut(s)	818
AoxI	GGCC	3 cut(s)	81, 450, 753
ApaLI	GTGCAC	1 cut(s)	719
ApeKI	GCWGC	4 cut(s)	122, 125, 764, 801
ArsI	GACNNNNNNTTYG	2 cut(s)	175, 207
Asp700I	GAANNNNTTC	1 cut(s)	257
AspLEI	GCGC	1 cut(s)	29
AspS9I	GGNCC	1 cut(s)	816
AsuHPI	GGTGA	1 cut(s)	486
AsuII	TTCGAA	1 cut(s)	739
AsuNHI	GCTAGC	1 cut(s)	767
AvaI	CYCGRG	1 cut(s)	874
AvaII	GGWCC	1 cut(s)	816
BaeGI	GKGCMC	2 cut(s)	723, 794
BanII	GRGCYC	1 cut(s)	479
BbsI	GAAGAC	1 cut(s)	156
Bbv12I	GWGCWC	2 cut(s)	479, 723
BbvI	GCAGC	4 cut(s)	109, 112, 776, 813
BceAI	ACGGC	2 cut(s)	68, 454
BcoDI	GTCTC	4 cut(s)	326, 352, 487, 852
BfaI	CTAG	2 cut(s)	30, 768
BfmI	CTRYAG	1 cut(s)	306
BglII	AGATCT	1 cut(s)	919
BisI	GCNGC	5 cut(s)	123, 126, 446, 765, 802
BlsI	GCNGC	5 cut(s)	124, 127, 447, 766, 803
Bme18I	GGWCC	1 cut(s)	816
BmeT110I	CYCGRG	1 cut(s)	874
BmgT120I	GGNCC	1 cut(s)	816
BmiI	GGNNCC	3 cut(s)	462, 468, 817
BmsI	GCATC	2 cut(s)	286, 961
BmtI	GCTAGC	1 cut(s)	771
BpiI	GAAGAC	1 cut(s)	156
Bpu14I	TTCGAA	1 cut(s)	739
BsaI	GGTCTC	2 cut(s)	326, 852
BsaWI	WCCGGW	2 cut(s)	496, 818
BsaXI	ACNNNNNCTCC	2 cut(s)	370, 400
Bse118I	RCCGGY	1 cut(s)	448
Bse1I	ACTGG	1 cut(s)	777
Bse3DI	GCAATG	1 cut(s)	717
BseAI	TCCGGA	1 cut(s)	818
BseGI	GGATG	4 cut(s)	387, 511, 544, 552
BseMI	GCAATG	1 cut(s)	717
BseMII	CTCAG	3 cut(s)	120, 267, 492
BseNI	ACTGG	1 cut(s)	777
BseRI	GAGGAG	4 cut(s)	145, 218, 632, 650
BseSI	GKGCMC	2 cut(s)	723, 794
BseX3I	CGGCCG	1 cut(s)	450
BseXI	GCAGC	4 cut(s)	109, 112, 776, 813
BseYI	CCCAGC	1 cut(s)	299
Bsh1285I	CGRYCG	1 cut(s)	453
BshFI	GGCC	3 cut(s)	83, 452, 755
BsiEI	CGRYCG	1 cut(s)	453
BsiHKAI	GWGCWC	2 cut(s)	479, 723
BsiHKCI	CYCGRG	1 cut(s)	874
BsiSI	CCGG	5 cut(s)	449, 458, 464, 497, 819
BsmAI	GTCTC	4 cut(s)	326, 352, 487, 852
BsmBI	CGTCTC	1 cut(s)	352
BsnI	GGCC	3 cut(s)	83, 452, 755
Bso31I	GGTCTC	2 cut(s)	326, 852
BsoBI	CYCGRG	1 cut(s)	874
Bsp119I	TTCGAA	1 cut(s)	739
Bsp1286I	GDGCHC	3 cut(s)	479, 723, 794
Bsp13I	TCCGGA	1 cut(s)	818
Bsp143I	GATC	7 cut(s)	211, 271, 362, 571, 639, 698, 919
BspACI	CCGC	5 cut(s)	370, 446, 834, 866, 938
BspANI	GGCC	3 cut(s)	83, 452, 755
BspCNI	CTCAG	3 cut(s)	121, 268, 491
BspEI	TCCGGA	1 cut(s)	818
BspHI	TCATGA	1 cut(s)	193
BspLI	GGNNCC	3 cut(s)	462, 468, 817
BspOI	GCTAGC	1 cut(s)	771
BspPI	GGATC	2 cut(s)	266, 357
BspT104I	TTCGAA	1 cut(s)	739
BspTNI	GGTCTC	2 cut(s)	326, 852
BsrDI	GCAATG	1 cut(s)	717
BsrFI	RCCGGY	1 cut(s)	448
BsrI	ACTGG	1 cut(s)	777
BssAI	RCCGGY	1 cut(s)	448
BssMI	GATC	7 cut(s)	211, 271, 362, 571, 639, 698, 919
Bst4CI	ACNGT	2 cut(s)	436, 560
Bst6I	CTCTTC	2 cut(s)	163, 495
BstAPI	GCANNNNNTGC	1 cut(s)	24
BstBI	TTCGAA	1 cut(s)	739
BstC8I	GCNNGC	5 cut(s)	20, 450, 719, 769, 933
BstDEI	CTNAG	4 cut(s)	129, 276, 478, 975
BstF5I	GGATG	4 cut(s)	387, 511, 544, 552
BstHHI	GCGC	1 cut(s)	29
BstKTI	GATC	7 cut(s)	214, 274, 365, 574, 642, 701, 922
BstMAI	GTCTC	4 cut(s)	326, 352, 487, 852
BstMBI	GATC	7 cut(s)	211, 271, 362, 571, 639, 698, 919
BstMCI	CGRYCG	1 cut(s)	453
BstMWI	GCNNNNNNNGC	8 cut(s)	24, 80, 454, 741, 761, 773, 798, 937
BstNSI	RCATGY	1 cut(s)	931
BstSFI	CTRYAG	1 cut(s)	306
BstSLI	GKGCMC	2 cut(s)	723, 794
BstV1I	GCAGC	4 cut(s)	109, 112, 776, 813
BstV2I	GAAGAC	1 cut(s)	156
BstX2I	RGATCY	2 cut(s)	271, 919
BstYI	RGATCY	2 cut(s)	271, 919
BstZI	CGGCCG	1 cut(s)	450
BsuRI	GGCC	3 cut(s)	83, 452, 755
BtsCI	GGATG	4 cut(s)	387, 511, 544, 552
BtsI	GCAGTG	3 cut(s)	612, 778, 861
BtsIMutI	CAGTG	4 cut(s)	612, 778, 861, 964
Cac8I	GCNNGC	5 cut(s)	20, 450, 719, 769, 933
CaiI	CAGNNNCTG	1 cut(s)	275
CciI	TCATGA	1 cut(s)	193
CfoI	GCGC	1 cut(s)	29
Cfr10I	RCCGGY	1 cut(s)	448
Cfr13I	GGNCC	1 cut(s)	816
CviAII	CATG	6 cut(s)	67, 79, 194, 514, 523, 928
DdeI	CTNAG	4 cut(s)	129, 276, 478, 975
DpnI	GATC	7 cut(s)	213, 273, 364, 573, 641, 700, 921
DpnII	GATC	7 cut(s)	211, 271, 362, 571, 639, 698, 919
EaeI	YGGCCR	2 cut(s)	81, 450
EagI	CGGCCG	1 cut(s)	450
Eam1104I	CTCTTC	2 cut(s)	163, 495
EarI	CTCTTC	2 cut(s)	163, 495
Ecl136II	GAGCTC	1 cut(s)	477
EclXI	CGGCCG	1 cut(s)	450
Eco24I	GRGCYC	1 cut(s)	479
Eco31I	GGTCTC	2 cut(s)	326, 852
Eco47I	GGWCC	1 cut(s)	816
Eco52I	CGGCCG	1 cut(s)	450
Eco53kI	GAGCTC	1 cut(s)	477
Eco57I	CTGAAG	2 cut(s)	189, 428
Eco88I	CYCGRG	1 cut(s)	874
EcoICRI	GAGCTC	1 cut(s)	477
EcoT38I	GRGCYC	1 cut(s)	479
Esp3I	CGTCTC	1 cut(s)	352
FaeI	CATG	6 cut(s)	70, 82, 197, 517, 526, 931
FaiI	YATR	8 cut(s)	68, 80, 195, 231, 515, 524, 917, 929
FalI	AAGNNNNNCTT	2 cut(s)	719, 751
FatI	CATG	6 cut(s)	66, 78, 193, 513, 522, 927
FauI	CCCGC	1 cut(s)	859
FblI	GTMKAC	1 cut(s)	134
Fnu4HI	GCNGC	5 cut(s)	123, 126, 446, 765, 802
FokI	GGATG	4 cut(s)	394, 518, 551, 559
FriOI	GRGCYC	1 cut(s)	479
Fsp4HI	GCNGC	5 cut(s)	123, 126, 446, 765, 802
FspBI	CTAG	2 cut(s)	30, 768
GlaI	GCGC	1 cut(s)	28
GluI	GCNGC	5 cut(s)	123, 126, 446, 765, 802
GsaI	CCCAGC	1 cut(s)	303
HaeIII	GGCC	3 cut(s)	83, 452, 755
HapII	CCGG	5 cut(s)	449, 458, 464, 497, 819
HhaI	GCGC	1 cut(s)	29
Hin1II	CATG	6 cut(s)	70, 82, 197, 517, 526, 931
Hin6I	GCGC	1 cut(s)	27
HinP1I	GCGC	1 cut(s)	27
HincII	GTYRAC	2 cut(s)	423, 439
HindII	GTYRAC	2 cut(s)	423, 439
HinfI	GANTC	7 cut(s)	131, 244, 338, 373, 440, 667, 879
HpaII	CCGG	5 cut(s)	449, 458, 464, 497, 819
HphI	GGTGA	1 cut(s)	486
Hpy166II	GTNNAC	4 cut(s)	135, 423, 439, 721
Hpy188I	TCNGA	7 cut(s)	169, 216, 263, 357, 378, 487, 970
Hpy188III	TCNNGA	8 cut(s)	194, 275, 317, 342, 575, 819, 876, 905
Hpy8I	GTNNAC	4 cut(s)	135, 423, 439, 721
HpyAV	CCTTC	3 cut(s)	64, 98, 211
HpyCH4III	ACNGT	2 cut(s)	436, 560
HpyCH4V	TGCA	7 cut(s)	18, 269, 605, 684, 721, 764, 801
HpyF10VI	GCNNNNNNNGC	8 cut(s)	24, 80, 454, 741, 761, 773, 798, 937
HpyF3I	CTNAG	4 cut(s)	129, 276, 478, 975
Hsp92II	CATG	6 cut(s)	70, 82, 197, 517, 526, 931
HspAI	GCGC	1 cut(s)	27
Kpn2I	TCCGGA	1 cut(s)	818
KroI	GCCGGC	1 cut(s)	448
KroNI	GCCGGC	1 cut(s)	450
Kzo9I	GATC	7 cut(s)	211, 271, 362, 571, 639, 698, 919
LmnI	GCTCC	4 cut(s)	403, 460, 466, 940
Lsp1109I	GCAGC	4 cut(s)	109, 112, 776, 813
LweI	GCATC	2 cut(s)	286, 961
MaeI	CTAG	2 cut(s)	30, 768
MaeIII	GTNAC	5 cut(s)	62, 674, 836, 869, 883
MalI	GATC	7 cut(s)	213, 273, 364, 573, 641, 700, 921
MboI	GATC	7 cut(s)	211, 271, 362, 571, 639, 698, 919
MfeI	CAATTG	1 cut(s)	629
MflI	RGATCY	2 cut(s)	271, 919
MhlI	GDGCHC	3 cut(s)	479, 723, 794
MluCI	AATT	3 cut(s)	398, 629, 644
MlyI	GAGTC	4 cut(s)	140, 347, 434, 888
MmeI	TCCRAC	1 cut(s)	510
MroI	TCCGGA	1 cut(s)	818
MroNI	GCCGGC	1 cut(s)	448
MroXI	GAANNNNTTC	1 cut(s)	257
MseI	TTAA	1 cut(s)	894
MspI	CCGG	5 cut(s)	449, 458, 464, 497, 819
MunI	CAATTG	1 cut(s)	629
MwoI	GCNNNNNNNGC	8 cut(s)	24, 80, 454, 741, 761, 773, 798, 937
NaeI	GCCGGC	1 cut(s)	450
NdeII	GATC	7 cut(s)	211, 271, 362, 571, 639, 698, 919
NgoMIV	GCCGGC	1 cut(s)	448
NheI	GCTAGC	1 cut(s)	767
NlaIII	CATG	6 cut(s)	70, 82, 197, 517, 526, 931
NlaIV	GGNNCC	3 cut(s)	462, 468, 817
NmeAIII	GCCGAG	1 cut(s)	478
NmuCI	GTSAC	4 cut(s)	62, 674, 836, 883
NspI	RCATGY	1 cut(s)	931
NspV	TTCGAA	1 cut(s)	739
PaeR7I	CTCGAG	1 cut(s)	874
PagI	TCATGA	1 cut(s)	193
PdiI	GCCGGC	1 cut(s)	450
PdmI	GAANNNNTTC	1 cut(s)	257
PfeI	GAWTC	3 cut(s)	244, 373, 667
PflFI	GACNNNGTC	1 cut(s)	337
PkrI	GCNGC	5 cut(s)	124, 127, 447, 766, 803
PleI	GAGTC	4 cut(s)	139, 346, 434, 887
PpsI	GAGTC	4 cut(s)	139, 346, 434, 887
Psp124BI	GAGCTC	1 cut(s)	479
PspFI	CCCAGC	1 cut(s)	299
PspN4I	GGNNCC	3 cut(s)	462, 468, 817
PspPI	GGNCC	1 cut(s)	816
PstNI	CAGNNNCTG	1 cut(s)	275
PsuI	RGATCY	2 cut(s)	271, 919
PsyI	GACNNNGTC	1 cut(s)	337
SacI	GAGCTC	1 cut(s)	479
SaqAI	TTAA	1 cut(s)	894
SatI	GCNGC	5 cut(s)	123, 126, 446, 765, 802
Sau3AI	GATC	7 cut(s)	211, 271, 362, 571, 639, 698, 919
Sau96I	GGNCC	1 cut(s)	816
SchI	GAGTC	4 cut(s)	140, 347, 434, 888
SduI	GDGCHC	3 cut(s)	479, 723, 794
SetI	ASST	9 cut(s)	24, 294, 408, 479, 597, 693, 769, 829, 848
SfaNI	GCATC	2 cut(s)	286, 961
SfcI	CTRYAG	1 cut(s)	306
Sfr274I	CTCGAG	1 cut(s)	874
SfuI	TTCGAA	1 cut(s)	739
SinI	GGWCC	1 cut(s)	816
SlaI	CTCGAG	1 cut(s)	874
SmlI	CTYRAG	1 cut(s)	874
SmoI	CTYRAG	1 cut(s)	874
Sse9I	AATT	3 cut(s)	398, 629, 644
SsiI	CCGC	5 cut(s)	370, 446, 834, 866, 938
SspMI	CTAG	2 cut(s)	30, 768
SstI	GAGCTC	1 cut(s)	479
TaaI	ACNGT	2 cut(s)	436, 560
TaqI	TCGA	6 cut(s)	341, 533, 624, 697, 739, 875
TaqII	GACCGA	1 cut(s)	350
TasI	AATT	3 cut(s)	398, 629, 644
TauI	GCSGC	1 cut(s)	448
TfiI	GAWTC	3 cut(s)	244, 373, 667
Tru1I	TTAA	1 cut(s)	894
Tru9I	TTAA	1 cut(s)	894
TscAI	CASTG	4 cut(s)	612, 778, 868, 964
TseFI	GTSAC	4 cut(s)	62, 674, 836, 883
TseI	GCWGC	4 cut(s)	122, 125, 764, 801
Tsp45I	GTSAC	4 cut(s)	62, 674, 836, 883
TspDTI	ATGAA	4 cut(s)	83, 189, 210, 904
TspRI	CASTG	4 cut(s)	612, 778, 868, 964
Tth111I	GACNNNGTC	1 cut(s)	337
VneI	GTGCAC	1 cut(s)	719
VpaK11BI	GGWCC	1 cut(s)	816
XceI	RCATGY	1 cut(s)	931
XhoI	CTCGAG	1 cut(s)	874
XmiI	GTMKAC	1 cut(s)	134
XmnI	GAANNNNTTC	1 cut(s)	257
XspI	CTAG	2 cut(s)	30, 768

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.