Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0013907

Physical Location & Seq

Genomic Coordinates Forward (+)

6507187 .. 6508179

Gene Structure 993 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g04850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGAGAGGCACAGATGCAAGCTCTGCTCTAGGGCTTTTGCTAATGGCAGAGCACTGGGTGGTCATATGAAGGCTCACTTGGCAACTTTTCCTCTTCCCCCTAAAACTTACCAAATCACTGAGTCCGACTCGTCTTCATCTTCCTCCTCCGGCGAAGAACCAGAAAAAGAAGAACAACATTTGCAAGAAGAACAAGAAGAGGAAAAGGGTTTGACTTATGGGCTGAGAGAGAACCCAAAGAGGAGTTTCCGGCTTGCGGATCCTGAGTTTTCTTTTGTTGATGCTGGGTCGGTGATTCAAGACAGAGAGAGTGAGACCGAGTCAAGAAACCCAACTCGGAGACGATCCAAGCGGAATCGAAGATCATTCGTTGTTGTTACAGATACTCTGCAGAGCCAGAAGTTGGAGTTGAAGAAAAAACCCAAGTTGACAATTTCAACACCGCCGCGTTTGGCCGAGTCTCCTACTCTAGCGGCAGAGCTTGAGCCGGTGAGCTCGGTCTCCGATACTTCTCCGGAAGAAGATGTTGCTATGTGCCTTATGATGCTGTCAAGAGATGTGTGGATGATAAGATTACATGATCATCAGCAAGCAGATCAATCGGTTCAAGTTCAAGAACATAGTAGGCAAGTAGTGGAGGAGCTGGAGGGGGTCAAATCGAAGAAACTTCGAGGGAAGAATCGGTGTGAGAAATGCAACAAACTGTTTCGATCTTTTCAAGCAATGTGCGGCCACAAAAAGATTTGCTTTCGGAACGAGGAGGAAGCAATCAACAATGCAGGTGGTGAGAAGCTGTTTGAGTGCCCCTTTTGCTACAAAATATTTGGTTCCGGTCAAGCTCTTGGCGGTCACAAAAGATCTCACCTTTCGGGTTCTTCAAGATCAATGGTTGTATCAATGGCTGCAAAAACTGAAGTTAAAGAGGGTTTCATAGATCTCAACCTGCCTGCTCCGGAAGAAGATGATGAATTTAGCGTGCTATCGGATGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

331

Amino Acids

37.21

Weight (kDa)

6.58

Isoelectric Point (pI)

72.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	3 - 27	1.2e-06	C2H2-type zinc finger
zf-C2H2_6	PF13912	266 - 289	4.8e-09	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013907)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16610
fragaria_vesca	FvH4_5g19030
malus_domestica	MD04G1063600.v1.1 MD06G1057700.v1.1
prunus_persica	Prupe.5G068600_v2.0.a1
pyrus_communis	pycom04g05740 pycom06g04850
rosa_chinensis	RchiOBHm_Chr7g0203441
rosa_laevigata	RLG00000003528
rosa_multiflora	Rmu_ssc0000485.1_g000001
rosa_roxburghii	Rroxscaffold_3G00253810
rosa_rugosa	Rorug07G0076000
rosa_samantha	Rh7AG205600 Rh7BG205400 Rh7CG218300 Rh7DG212700
rosa_wichuraiana	Rw7G017960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	770
Acc36I	ACCTGC	2 cut(s)	770, 951
AccB7I	CCANNNNNTGG	1 cut(s)	403
AccII	CGCG	1 cut(s)	448
AccIII	TCCGGA	2 cut(s)	514, 952
AciI	CCGC	7 cut(s)	257, 352, 443, 446, 473, 729, 846
AclWI	GGATC	3 cut(s)	254, 267, 339
AcoI	YGGCCR	2 cut(s)	453, 730
AcsI	RAATTY	1 cut(s)	968
AcuI	CTGAAG	1 cut(s)	933
AdeI	CACNNNGTG	1 cut(s)	59
AfiI	CCNNNNNNNGG	2 cut(s)	256, 403
AgsI	TTSAA	7 cut(s)	299, 412, 438, 608, 614, 719, 879
AjuI	GAANNNNNNNTTGG	2 cut(s)	62, 94
AluBI	AGCT	6 cut(s)	22, 481, 495, 643, 793, 839
AluI	AGCT	6 cut(s)	22, 481, 495, 643, 793, 839
Alw21I	GWGCWC	2 cut(s)	55, 497
Alw26I	GTCTC	4 cut(s)	308, 334, 465, 505
AlwI	GGATC	3 cut(s)	254, 267, 339
Aor13HI	TCCGGA	2 cut(s)	514, 952
AoxI	GGCC	2 cut(s)	453, 730
ApeKI	GCWGC	1 cut(s)	902
ApoI	RAATTY	1 cut(s)	968
AsuHPI	GGTGA	4 cut(s)	304, 502, 797, 854
BaeGI	GKGCMC	1 cut(s)	806
BamHI	GGATCC	1 cut(s)	259
BanII	GRGCYC	1 cut(s)	497
BbsI	GAAGAC	1 cut(s)	126
Bbv12I	GWGCWC	2 cut(s)	55, 497
BbvI	GCAGC	1 cut(s)	889
BcgI	CGANNNNNNTGC	2 cut(s)	582, 616
BclI	TGATCA	1 cut(s)	580
BcoDI	GTCTC	4 cut(s)	308, 334, 465, 505
BfaI	CTAG	2 cut(s)	30, 470
BfmI	CTRYAG	1 cut(s)	389
BfuAI	ACCTGC	2 cut(s)	770, 951
BglII	AGATCT	2 cut(s)	857, 934
BisI	GCNGC	4 cut(s)	446, 474, 730, 903
BlsI	GCNGC	4 cut(s)	447, 475, 731, 904
BmiI	GGNNCC	2 cut(s)	261, 829
BmrI	ACTGGG	1 cut(s)	65
BmsI	GCATC	4 cut(s)	5, 271, 534, 976
BmuI	ACTGGG	1 cut(s)	65
BpiI	GAAGAC	1 cut(s)	126
BplI	GAGNNNNNCTC	2 cut(s)	113, 145
BpmI	CTGGAG	1 cut(s)	665
BpuEI	CTTGAG	1 cut(s)	503
BsaI	GGTCTC	2 cut(s)	308, 505
BsaWI	WCCGGW	3 cut(s)	514, 830, 952
Bsc4I	CCNNNNNNNGG	2 cut(s)	256, 403
Bse118I	RCCGGY	1 cut(s)	487
Bse1I	ACTGG	1 cut(s)	60
Bse3DI	GCAATG	1 cut(s)	729
BseAI	TCCGGA	2 cut(s)	514, 952
BseGI	GGATG	2 cut(s)	570, 991
BseLI	CCNNNNNNNGG	2 cut(s)	256, 403
BseMI	GCAATG	1 cut(s)	729
BseMII	CTCAG	3 cut(s)	111, 215, 255
BseNI	ACTGG	1 cut(s)	60
BseRI	GAGGAG	4 cut(s)	136, 256, 653, 773
BseSI	GKGCMC	1 cut(s)	806
BseXI	GCAGC	1 cut(s)	889
BseYI	CCCAGC	1 cut(s)	284
Bsh1236I	CGCG	1 cut(s)	448
BshFI	GGCC	2 cut(s)	455, 732
BsiHKAI	GWGCWC	2 cut(s)	55, 497
BsiSI	CCGG	6 cut(s)	150, 250, 488, 515, 831, 953
BslI	CCNNNNNNNGG	2 cut(s)	256, 403
BsmAI	GTCTC	4 cut(s)	308, 334, 465, 505
BsmBI	CGTCTC	1 cut(s)	334
BsnI	GGCC	2 cut(s)	455, 732
Bso31I	GGTCTC	2 cut(s)	308, 505
Bsp1286I	GDGCHC	3 cut(s)	55, 497, 806
Bsp13I	TCCGGA	2 cut(s)	514, 952
Bsp143I	GATC	9 cut(s)	259, 344, 362, 580, 595, 710, 857, 881, 934
BspACI	CCGC	7 cut(s)	257, 352, 443, 446, 473, 729, 846
BspANI	GGCC	2 cut(s)	455, 732
BspCNI	CTCAG	3 cut(s)	112, 216, 256
BspEI	TCCGGA	2 cut(s)	514, 952
BspFNI	CGCG	1 cut(s)	448
BspLI	GGNNCC	2 cut(s)	261, 829
BspMAI	CTGCAG	1 cut(s)	393
BspMI	ACCTGC	2 cut(s)	770, 951
BspPI	GGATC	3 cut(s)	254, 267, 339
BspTNI	GGTCTC	2 cut(s)	308, 505
BsrDI	GCAATG	1 cut(s)	729
BsrFI	RCCGGY	1 cut(s)	487
BsrI	ACTGG	1 cut(s)	60
BssAI	RCCGGY	1 cut(s)	487
BssMI	GATC	9 cut(s)	259, 344, 362, 580, 595, 710, 857, 881, 934
Bst4CI	ACNGT	1 cut(s)	705
Bst6I	CTCTTC	2 cut(s)	99, 192
BstAPI	GCANNNNNTGC	1 cut(s)	24
BstC8I	GCNNGC	5 cut(s)	20, 255, 591, 948, 977
BstDEI	CTNAG	3 cut(s)	120, 224, 264
BstF5I	GGATG	2 cut(s)	570, 991
BstFNI	CGCG	1 cut(s)	448
BstKTI	GATC	9 cut(s)	262, 347, 365, 583, 598, 713, 860, 884, 937
BstMAI	GTCTC	4 cut(s)	308, 334, 465, 505
BstMBI	GATC	9 cut(s)	259, 344, 362, 580, 595, 710, 857, 881, 934
BstMWI	GCNNNNNNNGC	3 cut(s)	24, 80, 810
BstSFI	CTRYAG	1 cut(s)	389
BstSLI	GKGCMC	1 cut(s)	806
BstUI	CGCG	1 cut(s)	448
BstV1I	GCAGC	1 cut(s)	889
BstV2I	GAAGAC	1 cut(s)	126
BstX2I	RGATCY	3 cut(s)	259, 857, 934
BstYI	RGATCY	3 cut(s)	259, 857, 934
BsuRI	GGCC	2 cut(s)	455, 732
BtsCI	GGATG	2 cut(s)	570, 991
BtsIMutI	CAGTG	2 cut(s)	53, 117
BveI	ACCTGC	2 cut(s)	770, 951
Cac8I	GCNNGC	5 cut(s)	20, 255, 591, 948, 977
Cfr10I	RCCGGY	1 cut(s)	487
CspCI	CAANNNNNGTGG	2 cut(s)	763, 798
CviAII	CATG	1 cut(s)	578
DdeI	CTNAG	3 cut(s)	120, 224, 264
DpnI	GATC	9 cut(s)	261, 346, 364, 582, 597, 712, 859, 883, 936
DpnII	GATC	9 cut(s)	259, 344, 362, 580, 595, 710, 857, 881, 934
DraIII	CACNNNGTG	1 cut(s)	59
EaeI	YGGCCR	2 cut(s)	453, 730
Eam1104I	CTCTTC	2 cut(s)	99, 192
EarI	CTCTTC	2 cut(s)	99, 192
Ecl136II	GAGCTC	1 cut(s)	495
Eco24I	GRGCYC	1 cut(s)	497
Eco31I	GGTCTC	2 cut(s)	308, 505
Eco53kI	GAGCTC	1 cut(s)	495
Eco57I	CTGAAG	1 cut(s)	933
EcoICRI	GAGCTC	1 cut(s)	495
EcoT38I	GRGCYC	1 cut(s)	497
Esp3I	CGTCTC	1 cut(s)	334
FaeI	CATG	1 cut(s)	581
FaiI	YATR	8 cut(s)	66, 68, 219, 533, 542, 579, 621, 932
FalI	AAGNNNNNCTT	4 cut(s)	62, 94, 731, 763
FatI	CATG	1 cut(s)	577
FauNDI	CATATG	1 cut(s)	66
FbaI	TGATCA	1 cut(s)	580
Fnu4HI	GCNGC	4 cut(s)	446, 474, 730, 903
FokI	GGATG	1 cut(s)	577
FriOI	GRGCYC	1 cut(s)	497
Fsp4HI	GCNGC	4 cut(s)	446, 474, 730, 903
FspBI	CTAG	2 cut(s)	30, 470
GluI	GCNGC	4 cut(s)	446, 474, 730, 903
GsaI	CCCAGC	1 cut(s)	288
GsuI	CTGGAG	1 cut(s)	665
HaeIII	GGCC	2 cut(s)	455, 732
HapII	CCGG	6 cut(s)	150, 250, 488, 515, 831, 953
Hin1II	CATG	1 cut(s)	581
HincII	GTYRAC	1 cut(s)	429
HindII	GTYRAC	1 cut(s)	429
HinfI	GANTC	7 cut(s)	122, 128, 295, 320, 355, 458, 679
HpaII	CCGG	6 cut(s)	150, 250, 488, 515, 831, 953
HphI	GGTGA	4 cut(s)	304, 502, 797, 854
Hpy166II	GTNNAC	1 cut(s)	429
Hpy188I	TCNGA	5 cut(s)	127, 339, 505, 753, 985
Hpy188III	TCNNGA	8 cut(s)	263, 299, 324, 515, 552, 614, 879, 953
Hpy8I	GTNNAC	1 cut(s)	429
HpyAV	CCTTC	1 cut(s)	64
HpyCH4III	ACNGT	1 cut(s)	705
HpyCH4V	TGCA	6 cut(s)	18, 184, 391, 696, 779, 905
HpyF10VI	GCNNNNNNNGC	3 cut(s)	24, 80, 810
HpyF3I	CTNAG	3 cut(s)	120, 224, 264
Hsp92II	CATG	1 cut(s)	581
Kpn2I	TCCGGA	2 cut(s)	514, 952
Ksp22I	TGATCA	1 cut(s)	580
Kzo9I	GATC	9 cut(s)	259, 344, 362, 580, 595, 710, 857, 881, 934
LmnI	GCTCC	2 cut(s)	640, 955
Lsp1109I	GCAGC	1 cut(s)	889
LweI	GCATC	4 cut(s)	5, 271, 534, 976
MaeI	CTAG	2 cut(s)	30, 470
MaeIII	GTNAC	2 cut(s)	376, 848
MalI	GATC	9 cut(s)	261, 346, 364, 582, 597, 712, 859, 883, 936
MboI	GATC	9 cut(s)	259, 344, 362, 580, 595, 710, 857, 881, 934
MflI	RGATCY	3 cut(s)	259, 857, 934
MhlI	GDGCHC	3 cut(s)	55, 497, 806
MluCI	AATT	2 cut(s)	432, 968
MlyI	GAGTC	4 cut(s)	122, 131, 329, 467
MmeI	TCCRAC	2 cut(s)	150, 384
MroI	TCCGGA	2 cut(s)	514, 952
MseI	TTAA	1 cut(s)	918
MspI	CCGG	6 cut(s)	150, 250, 488, 515, 831, 953
MvnI	CGCG	1 cut(s)	448
MwoI	GCNNNNNNNGC	3 cut(s)	24, 80, 810
NdeI	CATATG	1 cut(s)	66
NdeII	GATC	9 cut(s)	259, 344, 362, 580, 595, 710, 857, 881, 934
NlaIII	CATG	1 cut(s)	581
NlaIV	GGNNCC	2 cut(s)	261, 829
NmeAIII	GCCGAG	1 cut(s)	481
NmuCI	GTSAC	1 cut(s)	848
PaqCI	CACCTGC	1 cut(s)	770
PfeI	GAWTC	3 cut(s)	295, 355, 679
PflFI	GACNNNGTC	1 cut(s)	319
PflMI	CCANNNNNTGG	1 cut(s)	403
PkrI	GCNGC	4 cut(s)	447, 475, 731, 904
PleI	GAGTC	4 cut(s)	122, 130, 328, 466
PpsI	GAGTC	4 cut(s)	122, 130, 328, 466
Psp124BI	GAGCTC	1 cut(s)	497
PspFI	CCCAGC	1 cut(s)	284
PspN4I	GGNNCC	2 cut(s)	261, 829
PstI	CTGCAG	1 cut(s)	393
PsuI	RGATCY	3 cut(s)	259, 857, 934
PsyI	GACNNNGTC	1 cut(s)	319
SacI	GAGCTC	1 cut(s)	497
SaqAI	TTAA	1 cut(s)	918
SatI	GCNGC	4 cut(s)	446, 474, 730, 903
Sau3AI	GATC	9 cut(s)	259, 344, 362, 580, 595, 710, 857, 881, 934
SchI	GAGTC	4 cut(s)	122, 131, 329, 467
SduI	GDGCHC	3 cut(s)	55, 497, 806
SetI	ASST	9 cut(s)	24, 483, 497, 645, 784, 795, 841, 867, 945
SfaNI	GCATC	4 cut(s)	5, 271, 534, 976
SfcI	CTRYAG	1 cut(s)	389
SmlI	CTYRAG	1 cut(s)	482
SmoI	CTYRAG	1 cut(s)	482
Sse9I	AATT	2 cut(s)	432, 968
SsiI	CCGC	7 cut(s)	257, 352, 443, 446, 473, 729, 846
SspI	AATATT	1 cut(s)	822
SspMI	CTAG	2 cut(s)	30, 470
SstI	GAGCTC	1 cut(s)	497
TaaI	ACNGT	1 cut(s)	705
TaqI	TCGA	4 cut(s)	358, 659, 670, 709
TaqII	GACCGA	2 cut(s)	332, 487
TasI	AATT	2 cut(s)	432, 968
TauI	GCSGC	3 cut(s)	448, 476, 732
TfiI	GAWTC	3 cut(s)	295, 355, 679
Tru1I	TTAA	1 cut(s)	918
Tru9I	TTAA	1 cut(s)	918
TscAI	CASTG	2 cut(s)	60, 124
TseFI	GTSAC	1 cut(s)	848
TseI	GCWGC	1 cut(s)	902
Tsp45I	GTSAC	1 cut(s)	848
TspDTI	ATGAA	4 cut(s)	83, 126, 919, 981
TspRI	CASTG	2 cut(s)	60, 124
Tth111I	GACNNNGTC	1 cut(s)	319
Van91I	CCANNNNNTGG	1 cut(s)	403
XapI	RAATTY	1 cut(s)	968
XspI	CTAG	2 cut(s)	30, 470

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.