Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013516

Physical Location & Seq

Genomic Coordinates Reverse (-)

9454707 .. 9457070

Gene Structure 2364 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G16800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGAGCTTCGTCAAGTATCTCCGCCGAGACAATTTGCTCCAGTTAGCTGGAAAACCATCTCTTAGCCGAAATTACATACTCCAGACCTGTCGGACTCTCATCATTGAAACCTCTCCACCTGAATTTGTCAAGCTTAATCGTCTATCTGGTTCCGATTCCGGTATAATCGAGGTCAATCTAGATAGGCCTGTCACCAAAAATGCTATTAATAAGGAGATGTTGAAAAGTCTCCAGAACGCATTTGAGTCCATACATCAAGATAATTCCGCTAGGGTTGTGATGATCAGAAGTCTGGTTCCAGGAGTTTTCTGTGCAGGTGCAGATCTTAAGGAACGTAGAACTATGAGTCCATCTGAGGTTCACACATATGTCAACTCGTTGCGCTACATGTTCTCGTTCATTGAGGCACTAAGTATCCCAACTATTGCTGCAATAGAAGGTGCAGCACTGGGAGGTGGACTCGAAATGGCTCTAGCTTGTGATCTTCGAATCTGTGGCGAAAATGCGGTATTTGGCTTGCCTGAAACAGGACTCGCTATAATCCCTGGAGCTGGTGGGACACAGAGGCTCTCAAGGCTGGTTGGGAGATCGGTATCAAAGGAACTTATATTTACAGGTCGAAAGATTGATGCAATAGAAGCTGCAAATAAAGGGCTTGTGAACATTTGTGTTACGGCAGGTGAGGCTCATGAGAAAGCAATTGAAATGGCACAGCAGATAAACGAAAAAGGTCCATTAGCTATAAAGATGGCGAAGAAAGCGATTGATGAAGGAATTGAAACAAATATGGCTTCAGGTTTGGAAGTAGAAGAGATGTGTTATCAGAAGCTTCTTAATACTCAAGATCGTCTTGAAGGATTAGCTGCTTTTGCTGAGAAGCGTAAGCCTCTGTACACTGGCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004300 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0016042 GO:0016054 GO:0016829 GO:0016835 GO:0016836 GO:0019395 GO:0019752 GO:0030258 GO:0032787 GO:0034440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0055114 GO:0071704 GO:0072329 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00280 ko01100 map00280 map01100

Pfam Domains

Protein Families

ECH_1

Protein Analysis

301

Amino Acids

32.79

Weight (kDa)

8.16

Isoelectric Point (pI)

51.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ECH_1	PF00378	52 - 300	1.3e-67	Enoyl-CoA hydratase/isomerase
ECH_2	PF16113	58 - 227	3.3e-30	Enoyl-CoA hydratase/isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16800
fragaria_vesca	FvH4_5g19890
malus_domestica	MD04G1057400.v1.1
prunus_persica	Prupe.5G061300_v2.0.a1 Prupe.5G061300_v2.0.a1
pyrus_communis	pycom04g05100
rosa_chinensis	RchiOBHm_Chr7g0204691
rosa_laevigata	RLG00000003437
rosa_multiflora	Rmu_sc0003221.1_g000066 Rmu_sc0007104.1_g000007
rosa_roxburghii	Rroxscaffold_3G00252860
rosa_rugosa	Rorug07G0085700 Rorug07G0085800
rosa_samantha	Rh7AG215600 Rh7BG212800 Rh7CG228700 Rh7DG223300
rosa_wichuraiana	Rw7G018690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	305, 668
Acc36I	ACCTGC	2 cut(s)	305, 668
AciI	CCGC	3 cut(s)	22, 267, 506
AcsI	RAATTY	1 cut(s)	122
AcuI	CTGAAG	1 cut(s)	777
AfaI	GTAC	1 cut(s)	893
AfiI	CCNNNNNNNGG	2 cut(s)	527, 551
AflII	CTTAAG	1 cut(s)	326
AflIII	ACRYGT	1 cut(s)	387
AgsI	TTSAA	5 cut(s)	107, 223, 704, 779, 854
AjnI	CCWGG	2 cut(s)	298, 544
AloI	GAACNNNNNNTCC	2 cut(s)	331, 363
AluBI	AGCT	9 cut(s)	6, 47, 133, 476, 551, 641, 740, 829, 863
AluI	AGCT	9 cut(s)	6, 47, 133, 476, 551, 641, 740, 829, 863
Alw26I	GTCTC	2 cut(s)	21, 233
AoxI	GGCC	1 cut(s)	185
ApeKI	GCWGC	4 cut(s)	428, 443, 641, 863
ApoI	RAATTY	1 cut(s)	122
AseI	ATTAAT	1 cut(s)	207
AspLEI	GCGC	1 cut(s)	384
AspS9I	GGNCC	1 cut(s)	731
AsuHPI	GGTGA	2 cut(s)	184, 692
AsuII	TTCGAA	1 cut(s)	487
AvaII	GGWCC	1 cut(s)	731
BbvI	GCAGC	4 cut(s)	415, 455, 628, 850
BccI	CCATC	3 cut(s)	64, 358, 742
BceAI	ACGGC	1 cut(s)	690
BciT130I	CCWGG	2 cut(s)	300, 546
BciVI	GTATCC	1 cut(s)	425
BclI	TGATCA	1 cut(s)	282
BcoDI	GTCTC	2 cut(s)	21, 233
BfaI	CTAG	3 cut(s)	179, 270, 473
BfrI	CTTAAG	1 cut(s)	326
BfuAI	ACCTGC	2 cut(s)	305, 668
BfuI	GTATCC	1 cut(s)	425
BglII	AGATCT	1 cut(s)	322
BisI	GCNGC	4 cut(s)	429, 444, 642, 864
BlsI	GCNGC	4 cut(s)	430, 445, 643, 865
Bme1390I	CCNGG	2 cut(s)	300, 546
Bme18I	GGWCC	1 cut(s)	731
BmgT120I	GGNCC	1 cut(s)	731
BmiI	GGNNCC	2 cut(s)	151, 297
BmrFI	CCNGG	2 cut(s)	300, 546
BmrI	ACTGGG	1 cut(s)	458
BmsI	GCATC	1 cut(s)	619
BmuI	ACTGGG	1 cut(s)	458
BplI	GAGNNNNNCTC	2 cut(s)	444, 476
BpmI	CTGGAG	4 cut(s)	23, 65, 215, 567
Bpu14I	TTCGAA	1 cut(s)	487
BpuEI	CTTGAG	2 cut(s)	556, 825
BsaBI	GATNNNNATC	1 cut(s)	592
BsaJI	CCNNGG	1 cut(s)	544
BsaWI	WCCGGW	1 cut(s)	158
Bsc4I	CCNNNNNNNGG	2 cut(s)	527, 551
Bse1I	ACTGG	3 cut(s)	40, 453, 901
Bse8I	GATNNNNATC	1 cut(s)	592
BseBI	CCWGG	2 cut(s)	300, 546
BseDI	CCNNGG	1 cut(s)	544
BseJI	GATNNNNATC	1 cut(s)	592
BseLI	CCNNNNNNNGG	2 cut(s)	527, 551
BseMII	CTCAG	2 cut(s)	345, 864
BseNI	ACTGG	3 cut(s)	40, 453, 901
BseXI	GCAGC	4 cut(s)	415, 455, 628, 850
BsgI	GTGCAG	3 cut(s)	333, 339, 462
BshFI	GGCC	1 cut(s)	187
BsiSI	CCGG	1 cut(s)	159
BslFI	GGGAC	1 cut(s)	571
BslI	CCNNNNNNNGG	2 cut(s)	527, 551
BsmAI	GTCTC	2 cut(s)	21, 233
BsmFI	GGGAC	1 cut(s)	571
BsnI	GGCC	1 cut(s)	187
Bsp119I	TTCGAA	1 cut(s)	487
Bsp1407I	TGTACA	1 cut(s)	891
Bsp143I	GATC	5 cut(s)	282, 322, 481, 587, 844
BspACI	CCGC	3 cut(s)	22, 267, 506
BspANI	GGCC	1 cut(s)	187
BspCNI	CTCAG	2 cut(s)	346, 865
BspHI	TCATGA	1 cut(s)	688
BspLI	GGNNCC	2 cut(s)	151, 297
BspMI	ACCTGC	2 cut(s)	305, 668
BspT104I	TTCGAA	1 cut(s)	487
BspTI	CTTAAG	1 cut(s)	326
BsrGI	TGTACA	1 cut(s)	891
BsrI	ACTGG	3 cut(s)	40, 453, 901
BssECI	CCNNGG	1 cut(s)	544
BssMI	GATC	5 cut(s)	282, 322, 481, 587, 844
Bst2UI	CCWGG	2 cut(s)	300, 546
Bst6I	CTCTTC	1 cut(s)	804
BstAFI	CTTAAG	1 cut(s)	326
BstAUI	TGTACA	1 cut(s)	891
BstBI	TTCGAA	1 cut(s)	487
BstC8I	GCNNGC	1 cut(s)	518
BstDEI	CTNAG	4 cut(s)	62, 354, 410, 873
BstENI	CCTNNNNNAGG	1 cut(s)	525
BstHHI	GCGC	1 cut(s)	384
BstKTI	GATC	5 cut(s)	285, 325, 484, 590, 847
BstMAI	GTCTC	2 cut(s)	21, 233
BstMBI	GATC	5 cut(s)	282, 322, 481, 587, 844
BstMWI	GCNNNNNNNGC	5 cut(s)	574, 638, 683, 758, 869
BstNI	CCWGG	2 cut(s)	300, 546
BstNSI	RCATGY	1 cut(s)	391
BstSCI	CCNGG	2 cut(s)	298, 544
BstV1I	GCAGC	4 cut(s)	415, 455, 628, 850
BstX2I	RGATCY	1 cut(s)	322
BstXI	CCANNNNNNTGG	1 cut(s)	47
BstYI	RGATCY	1 cut(s)	322
BsuI	GTATCC	1 cut(s)	425
BsuRI	GGCC	1 cut(s)	187
BtsIMutI	CAGTG	2 cut(s)	446, 894
BveI	ACCTGC	2 cut(s)	305, 668
Cac8I	GCNNGC	1 cut(s)	518
CciI	TCATGA	1 cut(s)	688
CfoI	GCGC	1 cut(s)	384
Cfr13I	GGNCC	1 cut(s)	731
Csp6I	GTAC	1 cut(s)	892
CviAII	CATG	2 cut(s)	388, 689
CviQI	GTAC	1 cut(s)	892
DdeI	CTNAG	4 cut(s)	62, 354, 410, 873
DpnI	GATC	5 cut(s)	284, 324, 483, 589, 846
DpnII	GATC	5 cut(s)	282, 322, 481, 587, 844
Eam1104I	CTCTTC	1 cut(s)	804
EarI	CTCTTC	1 cut(s)	804
EciI	GGCGGA	1 cut(s)	11
Eco147I	AGGCCT	1 cut(s)	187
Eco47I	GGWCC	1 cut(s)	731
Eco57I	CTGAAG	1 cut(s)	777
EcoNI	CCTNNNNNAGG	1 cut(s)	525
EcoRII	CCWGG	2 cut(s)	298, 544
FaeI	CATG	2 cut(s)	391, 692
FalI	AAGNNNNNCTT	2 cut(s)	834, 866
FaqI	GGGAC	1 cut(s)	571
FatI	CATG	2 cut(s)	387, 688
FauNDI	CATATG	1 cut(s)	367
FbaI	TGATCA	1 cut(s)	282
Fnu4HI	GCNGC	4 cut(s)	429, 444, 642, 864
Fsp4HI	GCNGC	4 cut(s)	429, 444, 642, 864
FspBI	CTAG	3 cut(s)	179, 270, 473
GlaI	GCGC	1 cut(s)	383
GluI	GCNGC	4 cut(s)	429, 444, 642, 864
GsuI	CTGGAG	4 cut(s)	23, 65, 215, 567
HaeIII	GGCC	1 cut(s)	187
HapII	CCGG	1 cut(s)	159
HhaI	GCGC	1 cut(s)	384
Hin1II	CATG	2 cut(s)	391, 692
Hin6I	GCGC	1 cut(s)	382
HinP1I	GCGC	1 cut(s)	382
HincII	GTYRAC	1 cut(s)	373
HindII	GTYRAC	1 cut(s)	373
HindIII	AAGCTT	2 cut(s)	131, 827
HinfI	GANTC	7 cut(s)	94, 155, 245, 346, 459, 489, 531
HpaII	CCGG	1 cut(s)	159
HphI	GGTGA	2 cut(s)	184, 692
Hpy166II	GTNNAC	5 cut(s)	361, 373, 458, 661, 894
Hpy188I	TCNGA	5 cut(s)	93, 154, 287, 355, 825
Hpy188III	TCNNGA	7 cut(s)	82, 179, 232, 257, 689, 842, 851
Hpy8I	GTNNAC	5 cut(s)	361, 373, 458, 661, 894
HpyAV	CCTTC	3 cut(s)	431, 764, 848
HpyCH4IV	ACGT	1 cut(s)	334
HpyCH4V	TGCA	6 cut(s)	314, 320, 431, 443, 632, 644
HpyF10VI	GCNNNNNNNGC	5 cut(s)	574, 638, 683, 758, 869
HpyF3I	CTNAG	4 cut(s)	62, 354, 410, 873
HpySE526I	ACGT	1 cut(s)	334
Hsp92II	CATG	2 cut(s)	391, 692
HspAI	GCGC	1 cut(s)	382
Ksp22I	TGATCA	1 cut(s)	282
Kzo9I	GATC	5 cut(s)	282, 322, 481, 587, 844
LmnI	GCTCC	2 cut(s)	42, 548
Lsp1109I	GCAGC	4 cut(s)	415, 455, 628, 850
LweI	GCATC	1 cut(s)	619
MaeI	CTAG	3 cut(s)	179, 270, 473
MaeII	ACGT	1 cut(s)	334
MaeIII	GTNAC	2 cut(s)	190, 670
MalI	GATC	5 cut(s)	284, 324, 483, 589, 846
MboI	GATC	5 cut(s)	282, 322, 481, 587, 844
MboII	GAAGA	3 cut(s)	476, 766, 821
MfeI	CAATTG	2 cut(s)	699, 901
MflI	RGATCY	1 cut(s)	322
MluCI	AATT	7 cut(s)	31, 70, 122, 262, 699, 774, 901
MlyI	GAGTC	5 cut(s)	88, 254, 355, 453, 525
MmeI	TCCRAC	1 cut(s)	71
MnlI	CCTC	8 cut(s)	121, 163, 349, 397, 446, 558, 676, 897
MseI	TTAA	4 cut(s)	135, 207, 327, 834
MslI	CAYNNNNRTG	1 cut(s)	366
MspCI	CTTAAG	1 cut(s)	326
MspI	CCGG	1 cut(s)	159
MspR9I	CCNGG	2 cut(s)	300, 546
MunI	CAATTG	2 cut(s)	699, 901
MvaI	CCWGG	2 cut(s)	300, 546
MwoI	GCNNNNNNNGC	5 cut(s)	574, 638, 683, 758, 869
NdeI	CATATG	1 cut(s)	367
NdeII	GATC	5 cut(s)	282, 322, 481, 587, 844
NlaIII	CATG	2 cut(s)	391, 692
NlaIV	GGNNCC	2 cut(s)	151, 297
NmeAIII	GCCGAG	1 cut(s)	50
NmuCI	GTSAC	1 cut(s)	190
NspI	RCATGY	1 cut(s)	391
NspV	TTCGAA	1 cut(s)	487
PagI	TCATGA	1 cut(s)	688
PaqCI	CACCTGC	2 cut(s)	305, 668
PceI	AGGCCT	1 cut(s)	187
PciI	ACATGT	1 cut(s)	387
PfeI	GAWTC	2 cut(s)	155, 489
PfoI	TCCNGGA	1 cut(s)	298
PkrI	GCNGC	4 cut(s)	430, 445, 643, 865
PleI	GAGTC	5 cut(s)	88, 253, 354, 453, 525
PpsI	GAGTC	5 cut(s)	88, 253, 354, 453, 525
PscI	ACATGT	1 cut(s)	387
PshBI	ATTAAT	1 cut(s)	207
Psp6I	CCWGG	2 cut(s)	298, 544
PspGI	CCWGG	2 cut(s)	298, 544
PspN4I	GGNNCC	2 cut(s)	151, 297
PspPI	GGNCC	1 cut(s)	731
PsuI	RGATCY	1 cut(s)	322
RsaI	GTAC	1 cut(s)	893
RsaNI	GTAC	1 cut(s)	892
RseI	CAYNNNNRTG	1 cut(s)	366
SaqAI	TTAA	4 cut(s)	135, 207, 327, 834
SatI	GCNGC	4 cut(s)	429, 444, 642, 864
Sau3AI	GATC	5 cut(s)	282, 322, 481, 587, 844
Sau96I	GGNCC	1 cut(s)	731
SchI	GAGTC	5 cut(s)	88, 254, 355, 453, 525
ScrFI	CCNGG	2 cut(s)	300, 546
SfaNI	GCATC	1 cut(s)	619
SfuI	TTCGAA	1 cut(s)	487
SinI	GGWCC	1 cut(s)	731
SmiMI	CAYNNNNRTG	1 cut(s)	366
SmlI	CTYRAG	3 cut(s)	326, 571, 840
SmoI	CTYRAG	3 cut(s)	326, 571, 840
Sse9I	AATT	7 cut(s)	31, 70, 122, 262, 699, 774, 901
SseBI	AGGCCT	1 cut(s)	187
SsiI	CCGC	3 cut(s)	22, 267, 506
SspMI	CTAG	3 cut(s)	179, 270, 473
StuI	AGGCCT	1 cut(s)	187
StyD4I	CCNGG	2 cut(s)	298, 544
TaiI	ACGT	1 cut(s)	337
TaqI	TCGA	4 cut(s)	168, 462, 487, 619
TasI	AATT	7 cut(s)	31, 70, 122, 262, 699, 774, 901
TatI	WGTACW	1 cut(s)	891
TfiI	GAWTC	2 cut(s)	155, 489
Tru1I	TTAA	4 cut(s)	135, 207, 327, 834
Tru9I	TTAA	4 cut(s)	135, 207, 327, 834
TscAI	CASTG	2 cut(s)	453, 901
TseFI	GTSAC	1 cut(s)	190
TseI	GCWGC	4 cut(s)	428, 443, 641, 863
Tsp45I	GTSAC	1 cut(s)	190
TspDTI	ATGAA	2 cut(s)	388, 783
TspRI	CASTG	2 cut(s)	453, 901
Vha464I	CTTAAG	1 cut(s)	326
VpaK11BI	GGWCC	1 cut(s)	731
VspI	ATTAAT	1 cut(s)	207
XagI	CCTNNNNNAGG	1 cut(s)	525
XapI	RAATTY	1 cut(s)	122
XbaI	TCTAGA	1 cut(s)	178
XceI	RCATGY	1 cut(s)	391
XspI	CTAG	3 cut(s)	179, 270, 473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.