Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0013516

Physical Location & Seq

Genomic Coordinates Forward (+)

6716246 .. 6719529

Gene Structure 3284 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G061300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGTGGCTGCTTTGAAAGCCGTATGCAGGTCACCGAGACATTACAAACCCAGAACCTCTGCATTTCCAGAGAGTCAGCAATGGCTTTACATAGCTCGCCGCGGTCTAATTTTGGATCAAGCACCTTCTCACTCCGTCAGCCTTCACAGACTCTCTGACTCCGATTCAGGGATTGTTGAGGTTAGTTTGGAGAGGCCTGAGGTGAGAAATGCAATAGGGAAAGATATGCTGAGAGGGTTGCAGAATACCTTTGAAGCTATCAGTAAGGACTCTTCTGCTAATGTTTTGATGATCCGCAGCAAAGTGCCCAAGGTATTCTGTGCTGGCGCGGATTTGAAGGAACGCAAAATGATGAGTTCATCTGAAGTTCGAGATTTTGTCAATACGCTGCGTGCCACATTCTCGTTTTTGGAGGTACTTTGTATTCCTACTATTGCTGTTATTGAAGGAGCAGCATTGGGCGGTGGACTTGAAATGGCTTTATCATGTGATCTCCGGATATGTGGAGAAGAAGCAGTGATGGGCTTGCCAGAAACAGGACTTGCTATAATTCCGGGGGCAGGTGGAACACAGCGACTTCCTAGAATTGTGGGAAAAGCATTTGCAAAGGAACTCATATTCACTGGCAGGAAGATTGGTGGCAGAGAAGCAATGTCGATTGGTCTGGTAAATTACTGTGTTCCTGCTGGTGAAGCTCATCTAAAGGCACTTGAAATTGCTCGCAATATAAATGAGAAGGGTCCCATAGCAGTAAGGATGGCAAAAAAAGCTATTGACGAGGGCCTGGTGGTACATAAGACCTCAGCTTTGGCACTAGAAGAAGAATGCTATGAACAAACCTTGAACACAAATGATCGCTTGGAAGCCCTAGCAGCATTTGCTGAGAAGCGCAAGCCAAGGTATACTGGAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004300 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0016042 GO:0016054 GO:0016829 GO:0016835 GO:0016836 GO:0019395 GO:0019752 GO:0030258 GO:0032787 GO:0034440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0055114 GO:0071704 GO:0072329 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00280 ko01100 map00280 map01100

Pfam Domains

Protein Families

ECH_1

Protein Analysis

305

Amino Acids

33.04

Weight (kDa)

8.79

Isoelectric Point (pI)

44.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16800
fragaria_vesca	FvH4_5g19890
malus_domestica	MD04G1057400.v1.1
prunus_persica	Prupe.5G061300_v2.0.a1 Prupe.5G061300_v2.0.a1
pyrus_communis	pycom04g05100
rosa_chinensis	RchiOBHm_Chr7g0204691
rosa_laevigata	RLG00000003437
rosa_multiflora	Rmu_sc0003221.1_g000066 Rmu_sc0007104.1_g000007
rosa_roxburghii	Rroxscaffold_3G00252860
rosa_rugosa	Rorug07G0085700 Rorug07G0085800
rosa_samantha	Rh7AG215600 Rh7BG212800 Rh7CG228700 Rh7DG223300
rosa_wichuraiana	Rw7G018690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	551
Acc36I	ACCTGC	2 cut(s)	18, 551
AccI	GTMKAC	1 cut(s)	902
AccII	CGCG	2 cut(s)	102, 329
AccIII	TCCGGA	1 cut(s)	495
AciI	CCGC	5 cut(s)	100, 102, 295, 329, 462
AclWI	GGATC	2 cut(s)	123, 286
AcuI	CTGAAG	1 cut(s)	384
AfaI	GTAC	2 cut(s)	417, 792
AfiI	CCNNNNNNNGG	4 cut(s)	27, 168, 536, 560
AgsI	TTSAA	7 cut(s)	16, 254, 337, 446, 473, 713, 844
AjnI	CCWGG	1 cut(s)	783
AluBI	AGCT	5 cut(s)	95, 257, 695, 770, 806
AluI	AGCT	5 cut(s)	95, 257, 695, 770, 806
Alw26I	GTCTC	1 cut(s)	31
AlwI	GGATC	2 cut(s)	123, 286
Aor13HI	TCCGGA	1 cut(s)	495
AoxI	GGCC	2 cut(s)	194, 781
ApeKI	GCWGC	5 cut(s)	8, 297, 388, 452, 872
ArsI	GACNNNNNNTTYG	2 cut(s)	790, 822
AspLEI	GCGC	2 cut(s)	329, 891
AspS9I	GGNCC	2 cut(s)	740, 781
AsuC2I	CCSGG	1 cut(s)	555
AsuHPI	GGTGA	3 cut(s)	24, 214, 701
AvaII	GGWCC	1 cut(s)	740
AxyI	CCTNAGG	1 cut(s)	198
BaeGI	GKGCMC	1 cut(s)	309
BarI	GAAGNNNNNNTAC	2 cut(s)	256, 288
BbvCI	CCTCAGC	1 cut(s)	802
BbvI	GCAGC	4 cut(s)	309, 375, 464, 884
BccI	CCATC	2 cut(s)	514, 751
BceAI	ACGGC	1 cut(s)	5
BciT130I	CCWGG	1 cut(s)	785
BcnI	CCSGG	1 cut(s)	555
BcoDI	GTCTC	1 cut(s)	31
BfaI	CTAG	3 cut(s)	582, 815, 869
BfuAI	ACCTGC	2 cut(s)	18, 551
BisI	GCNGC	6 cut(s)	9, 100, 298, 389, 453, 873
BlsI	GCNGC	6 cut(s)	10, 101, 299, 390, 454, 874
Bme1390I	CCNGG	2 cut(s)	555, 785
Bme18I	GGWCC	1 cut(s)	740
BmgT120I	GGNCC	2 cut(s)	740, 781
BmiI	GGNNCC	2 cut(s)	741, 742
BmrFI	CCNGG	2 cut(s)	555, 785
Bpu10I	CCTNAGC	1 cut(s)	802
BpuMI	CCSGG	1 cut(s)	555
BsaJI	CCNNGG	4 cut(s)	100, 309, 554, 896
BsaWI	WCCGGW	1 cut(s)	495
Bsc4I	CCNNNNNNNGG	4 cut(s)	27, 168, 536, 560
Bse1I	ACTGG	2 cut(s)	628, 910
Bse21I	CCTNAGG	1 cut(s)	198
Bse3DI	GCAATG	2 cut(s)	86, 657
BseAI	TCCGGA	1 cut(s)	495
BseBI	CCWGG	1 cut(s)	785
BseDI	CCNNGG	4 cut(s)	100, 309, 554, 896
BseGI	GGATG	1 cut(s)	762
BseLI	CCNNNNNNNGG	4 cut(s)	27, 168, 536, 560
BseMI	GCAATG	2 cut(s)	86, 657
BseMII	CTCAG	4 cut(s)	189, 221, 816, 873
BseNI	ACTGG	2 cut(s)	628, 910
BseSI	GKGCMC	1 cut(s)	309
BseXI	GCAGC	4 cut(s)	309, 375, 464, 884
Bsh1236I	CGCG	2 cut(s)	102, 329
BshFI	GGCC	2 cut(s)	196, 783
BsiSI	CCGG	2 cut(s)	496, 554
BslFI	GGGAC	1 cut(s)	726
BslI	CCNNNNNNNGG	4 cut(s)	27, 168, 536, 560
BsmAI	GTCTC	1 cut(s)	31
BsmFI	GGGAC	1 cut(s)	726
BsmI	GAATGC	1 cut(s)	830
BsnI	GGCC	2 cut(s)	196, 783
Bsp1286I	GDGCHC	1 cut(s)	309
Bsp13I	TCCGGA	1 cut(s)	495
Bsp143I	GATC	4 cut(s)	115, 291, 490, 853
BspACI	CCGC	5 cut(s)	100, 102, 295, 329, 462
BspANI	GGCC	2 cut(s)	196, 783
BspCNI	CTCAG	4 cut(s)	190, 222, 815, 874
BspEI	TCCGGA	1 cut(s)	495
BspFNI	CGCG	2 cut(s)	102, 329
BspLI	GGNNCC	2 cut(s)	741, 742
BspMI	ACCTGC	2 cut(s)	18, 551
BspPI	GGATC	2 cut(s)	123, 286
BsrDI	GCAATG	2 cut(s)	86, 657
BsrI	ACTGG	2 cut(s)	628, 910
BssECI	CCNNGG	4 cut(s)	100, 309, 554, 896
BssMI	GATC	4 cut(s)	115, 291, 490, 853
BssNAI	GTATAC	1 cut(s)	903
BssT1I	CCWWGG	2 cut(s)	309, 896
Bst1107I	GTATAC	1 cut(s)	903
Bst2UI	CCWGG	1 cut(s)	785
Bst4CI	ACNGT	1 cut(s)	677
Bst6I	CTCTTC	1 cut(s)	277
BstAPI	GCANNNNNTGC	1 cut(s)	878
BstC8I	GCNNGC	6 cut(s)	97, 325, 393, 527, 721, 893
BstDEI	CTNAG	4 cut(s)	198, 230, 802, 882
BstDSI	CCRYGG	1 cut(s)	100
BstEII	GGTNACC	1 cut(s)	30
BstF5I	GGATG	1 cut(s)	762
BstFNI	CGCG	2 cut(s)	102, 329
BstHHI	GCGC	2 cut(s)	329, 891
BstKTI	GATC	4 cut(s)	118, 294, 493, 856
BstMAI	GTCTC	1 cut(s)	31
BstMBI	GATC	4 cut(s)	115, 291, 490, 853
BstMWI	GCNNNNNNNGC	5 cut(s)	17, 692, 767, 872, 878
BstNI	CCWGG	1 cut(s)	785
BstPI	GGTNACC	1 cut(s)	30
BstSCI	CCNGG	2 cut(s)	553, 783
BstSLI	GKGCMC	1 cut(s)	309
BstUI	CGCG	2 cut(s)	102, 329
BstV1I	GCAGC	4 cut(s)	309, 375, 464, 884
BstZ17I	GTATAC	1 cut(s)	903
Bsu36I	CCTNAGG	1 cut(s)	198
BsuRI	GGCC	2 cut(s)	196, 783
BtgI	CCRYGG	1 cut(s)	100
BtsCI	GGATG	1 cut(s)	762
BtsI	GCAGTG	1 cut(s)	522
BtsIMutI	CAGTG	2 cut(s)	522, 621
BveI	ACCTGC	2 cut(s)	18, 551
Cac8I	GCNNGC	6 cut(s)	97, 325, 393, 527, 721, 893
CfoI	GCGC	2 cut(s)	329, 891
Cfr13I	GGNCC	2 cut(s)	740, 781
Cfr42I	CCGCGG	1 cut(s)	103
Csp6I	GTAC	2 cut(s)	416, 791
CviAII	CATG	1 cut(s)	486
CviQI	GTAC	2 cut(s)	416, 791
DdeI	CTNAG	4 cut(s)	198, 230, 802, 882
DpnI	GATC	4 cut(s)	117, 293, 492, 855
DpnII	GATC	4 cut(s)	115, 291, 490, 853
Eam1104I	CTCTTC	1 cut(s)	277
EarI	CTCTTC	1 cut(s)	277
Eco130I	CCWWGG	2 cut(s)	309, 896
Eco147I	AGGCCT	1 cut(s)	196
Eco47I	GGWCC	1 cut(s)	740
Eco57I	CTGAAG	1 cut(s)	384
Eco81I	CCTNAGG	1 cut(s)	198
Eco91I	GGTNACC	1 cut(s)	30
EcoO109I	RGGNCCY	2 cut(s)	740, 781
EcoO65I	GGTNACC	1 cut(s)	30
EcoRII	CCWGG	1 cut(s)	783
EcoT14I	CCWWGG	2 cut(s)	309, 896
ErhI	CCWWGG	2 cut(s)	309, 896
FaeI	CATG	1 cut(s)	489
FaqI	GGGAC	1 cut(s)	726
FatI	CATG	1 cut(s)	485
FblI	GTMKAC	1 cut(s)	902
Fnu4HI	GCNGC	6 cut(s)	9, 100, 298, 389, 453, 873
FokI	GGATG	1 cut(s)	769
Fsp4HI	GCNGC	6 cut(s)	9, 100, 298, 389, 453, 873
FspBI	CTAG	3 cut(s)	582, 815, 869
GlaI	GCGC	2 cut(s)	328, 890
GluI	GCNGC	6 cut(s)	9, 100, 298, 389, 453, 873
HaeIII	GGCC	2 cut(s)	196, 783
HapII	CCGG	2 cut(s)	496, 554
HhaI	GCGC	2 cut(s)	329, 891
Hin1II	CATG	1 cut(s)	489
Hin6I	GCGC	2 cut(s)	327, 889
HinP1I	GCGC	2 cut(s)	327, 889
HinfI	GANTC	5 cut(s)	73, 150, 158, 164, 269
HpaII	CCGG	2 cut(s)	496, 554
HphI	GGTGA	3 cut(s)	24, 214, 701
Hpy166II	GTNNAC	2 cut(s)	467, 903
Hpy188I	TCNGA	3 cut(s)	157, 163, 364
Hpy188III	TCNNGA	3 cut(s)	68, 371, 496
Hpy8I	GTNNAC	2 cut(s)	467, 903
HpyAV	CCTTC	5 cut(s)	135, 152, 331, 440, 730
HpyCH4III	ACNGT	1 cut(s)	677
HpyCH4V	TGCA	5 cut(s)	27, 62, 212, 241, 605
HpyF10VI	GCNNNNNNNGC	5 cut(s)	17, 692, 767, 872, 878
HpyF3I	CTNAG	4 cut(s)	198, 230, 802, 882
Hsp92II	CATG	1 cut(s)	489
HspAI	GCGC	2 cut(s)	327, 889
KflI	GGGWCCC	1 cut(s)	740
Kpn2I	TCCGGA	1 cut(s)	495
KspI	CCGCGG	1 cut(s)	103
Kzo9I	GATC	4 cut(s)	115, 291, 490, 853
LmnI	GCTCC	1 cut(s)	449
Lsp1109I	GCAGC	4 cut(s)	309, 375, 464, 884
MaeI	CTAG	3 cut(s)	582, 815, 869
MaeIII	GTNAC	1 cut(s)	30
MalI	GATC	4 cut(s)	117, 293, 492, 855
MboI	GATC	4 cut(s)	115, 291, 490, 853
MboII	GAAGA	5 cut(s)	264, 521, 643, 830, 833
MhlI	GDGCHC	1 cut(s)	309
MluCI	AATT	5 cut(s)	108, 549, 585, 670, 714
MlyI	GAGTC	4 cut(s)	82, 144, 152, 263
MnlI	CCTC	8 cut(s)	67, 172, 186, 193, 227, 406, 772, 811
MroI	TCCGGA	1 cut(s)	495
MseI	TTAA	1 cut(s)	913
MspA1I	CMGCKG	1 cut(s)	102
MspI	CCGG	2 cut(s)	496, 554
MspR9I	CCNGG	2 cut(s)	555, 785
Mva1269I	GAATGC	1 cut(s)	830
MvaI	CCWGG	1 cut(s)	785
MvnI	CGCG	2 cut(s)	102, 329
MwoI	GCNNNNNNNGC	5 cut(s)	17, 692, 767, 872, 878
NciI	CCSGG	1 cut(s)	555
NdeII	GATC	4 cut(s)	115, 291, 490, 853
NlaIII	CATG	1 cut(s)	489
NlaIV	GGNNCC	2 cut(s)	741, 742
NmuCI	GTSAC	1 cut(s)	30
PaqCI	CACCTGC	1 cut(s)	551
PceI	AGGCCT	1 cut(s)	196
PctI	GAATGC	1 cut(s)	830
PfeI	GAWTC	1 cut(s)	164
PkrI	GCNGC	6 cut(s)	10, 101, 299, 390, 454, 874
PleI	GAGTC	4 cut(s)	81, 144, 152, 263
PpsI	GAGTC	4 cut(s)	81, 144, 152, 263
PpuMI	RGGWCCY	1 cut(s)	740
Psp5II	RGGWCCY	1 cut(s)	740
Psp6I	CCWGG	1 cut(s)	783
PspEI	GGTNACC	1 cut(s)	30
PspGI	CCWGG	1 cut(s)	783
PspN4I	GGNNCC	2 cut(s)	741, 742
PspPI	GGNCC	2 cut(s)	740, 781
PspPPI	RGGWCCY	1 cut(s)	740
RsaI	GTAC	2 cut(s)	417, 792
RsaNI	GTAC	2 cut(s)	416, 791
SacII	CCGCGG	1 cut(s)	103
SaqAI	TTAA	1 cut(s)	913
SatI	GCNGC	6 cut(s)	9, 100, 298, 389, 453, 873
Sau3AI	GATC	4 cut(s)	115, 291, 490, 853
Sau96I	GGNCC	2 cut(s)	740, 781
SchI	GAGTC	4 cut(s)	82, 144, 152, 263
ScrFI	CCNGG	2 cut(s)	555, 785
SduI	GDGCHC	1 cut(s)	309
Sfr303I	CCGCGG	1 cut(s)	103
SgrBI	CCGCGG	1 cut(s)	103
SinI	GGWCC	1 cut(s)	740
Sse9I	AATT	5 cut(s)	108, 549, 585, 670, 714
SseBI	AGGCCT	1 cut(s)	196
SsiI	CCGC	5 cut(s)	100, 102, 295, 329, 462
SspMI	CTAG	3 cut(s)	582, 815, 869
StuI	AGGCCT	1 cut(s)	196
StyD4I	CCNGG	2 cut(s)	553, 783
StyI	CCWWGG	2 cut(s)	309, 896
TaaI	ACNGT	1 cut(s)	677
TaqI	TCGA	2 cut(s)	370, 656
TasI	AATT	5 cut(s)	108, 549, 585, 670, 714
TauI	GCSGC	1 cut(s)	102
TfiI	GAWTC	1 cut(s)	164
Tru1I	TTAA	1 cut(s)	913
Tru9I	TTAA	1 cut(s)	913
TscAI	CASTG	2 cut(s)	522, 628
TseFI	GTSAC	1 cut(s)	30
TseI	GCWGC	5 cut(s)	8, 297, 388, 452, 872
Tsp45I	GTSAC	1 cut(s)	30
TspDTI	ATGAA	2 cut(s)	348, 846
TspGWI	ACGGA	1 cut(s)	124
TspRI	CASTG	2 cut(s)	522, 628
VpaK11BI	GGWCC	1 cut(s)	740
XmiI	GTMKAC	1 cut(s)	902
XspI	CTAG	3 cut(s)	582, 815, 869

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.