Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0013516

Physical Location & Seq

Genomic Coordinates Forward (+)

48490333 .. 48493191

Gene Structure 2859 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003437

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGGTGCTTTGAGAGTTCTAAGCAAGTCCCTCAGACATTACACACCCAAAGCCTCTATATTTCCAGATAACTCAATCACTCCCACACCCGAAAAATGGATTTACCAAACTCGCCGGACTCTGATTCTAGAGTCAGCACCCTCTCACTCCGTCAACCTCCACAGGCTCTCCGACTCCGATTCCGGAATCGTTGAAGTTAGTTTGGAGAGACCCCAAGTGAGAAATGCAATAGGGAAAGATATGCTCAAAGGTTTGCAGAACACGTTTGAAGCTATGAGTAAAGATTCATCTGCTAAGGTTTTGTTGATCCGCAGTAAAGTTCCCAAGGTGTTCTGTGCAGGAGCAGATTTGAAGGAACGCAAGACGATGACTGCAACTGAGGTTCAAGATTTTGTGAACAAGCTGCGTGCCACATTCTCATTTCTAGAGGTACTTCCCATTCCTACCATCGCTGTCATTGAAGGGGCAGCATTGGGTGGTGGACTTGAAATGGCTTTATCATGTGATCTTCGGATATGTGGAGAAGATGCAGTATTGGGATTGCCAGAAACTGGACTTGCTATAATTCCCGGGGCAGGTGGGACTCAACGACTTCCTAGAGTGGTTGGAAGATCAATAGCAAAGGAACTCATATTGACTGGGAGGAAGATTGGTGGCAGAGAAGCAATGTCAATGGGTCTGGTAAATTACTGTGTGCATGCTGGTGAAGCTCATCTAAAGGCACTTGAAGTTGCTCGCAATATAAATGAGAAGGGTCCAATAGCAATAAGGATGGCGAAAAGAGCTATTGACCAGGGACTTGAGGTAGATAGGGCATCAGCTTTGGCACTGGAAGAAGAATGCTATGAACAGACCTTGCACACAGAAGATCGTTTGGAAGCCCTGGCAGCATTTGCTGAGAAGCGGAAGCCAAGGTATACTGGAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004300 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0016042 GO:0016054 GO:0016829 GO:0016835 GO:0016836 GO:0019395 GO:0019752 GO:0030258 GO:0032787 GO:0034440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0055114 GO:0071704 GO:0072329 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00280 ko01100 map00280 map01100

Pfam Domains

Protein Families

ECH_1

Protein Analysis

310

Amino Acids

33.65

Weight (kDa)

9.03

Isoelectric Point (pI)

40.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ECH_1	PF00378	60 - 308	4.5e-62	Enoyl-CoA hydratase/isomerase
ECH_2	PF16113	66 - 236	1.9e-32	Enoyl-CoA hydratase/isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16800
fragaria_vesca	FvH4_5g19890
malus_domestica	MD04G1057400.v1.1
prunus_persica	Prupe.5G061300_v2.0.a1 Prupe.5G061300_v2.0.a1
pyrus_communis	pycom04g05100
rosa_chinensis	RchiOBHm_Chr7g0204691
rosa_laevigata	RLG00000003437
rosa_multiflora	Rmu_sc0003221.1_g000066 Rmu_sc0007104.1_g000007
rosa_roxburghii	Rroxscaffold_3G00252860
rosa_rugosa	Rorug07G0085700 Rorug07G0085800
rosa_samantha	Rh7AG215600 Rh7BG212800 Rh7CG228700 Rh7DG223300
rosa_wichuraiana	Rw7G018690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	566
Acc36I	ACCTGC	1 cut(s)	566
AccB7I	CCANNNNNTGG	1 cut(s)	551
AccI	GTMKAC	1 cut(s)	917
AccIII	TCCGGA	1 cut(s)	182
AciI	CCGC	2 cut(s)	310, 904
AclWI	GGATC	1 cut(s)	301
AfaI	GTAC	1 cut(s)	432
AfiI	CCNNNNNNNGG	3 cut(s)	96, 551, 575
AflIII	ACRYGT	1 cut(s)	261
AgsI	TTSAA	7 cut(s)	194, 269, 352, 386, 461, 488, 728
AjnI	CCWGG	2 cut(s)	792, 882
AluBI	AGCT	5 cut(s)	272, 403, 710, 785, 821
AluI	AGCT	5 cut(s)	272, 403, 710, 785, 821
Alw26I	GTCTC	1 cut(s)	202
AlwI	GGATC	1 cut(s)	301
AlwNI	CAGNNNCTG	1 cut(s)	551
Ama87I	CYCGRG	1 cut(s)	569
Aor13HI	TCCGGA	1 cut(s)	182
ApeKI	GCWGC	3 cut(s)	403, 467, 887
AspS9I	GGNCC	1 cut(s)	755
AsuC2I	CCSGG	2 cut(s)	570, 571
AsuHPI	GGTGA	1 cut(s)	716
AvaI	CYCGRG	1 cut(s)	569
AvaII	GGWCC	1 cut(s)	755
BbvI	GCAGC	3 cut(s)	390, 479, 899
BccI	CCATC	2 cut(s)	455, 766
BciT130I	CCWGG	2 cut(s)	794, 884
BcnI	CCSGG	2 cut(s)	570, 571
BcoDI	GTCTC	1 cut(s)	202
BfaI	CTAG	3 cut(s)	128, 425, 597
BfuAI	ACCTGC	1 cut(s)	566
BisI	GCNGC	3 cut(s)	404, 468, 888
BlsI	GCNGC	3 cut(s)	405, 469, 889
Bme1390I	CCNGG	4 cut(s)	570, 571, 794, 884
Bme18I	GGWCC	1 cut(s)	755
BmeT110I	CYCGRG	1 cut(s)	569
BmgT120I	GGNCC	1 cut(s)	755
BmiI	GGNNCC	1 cut(s)	756
BmrFI	CCNGG	4 cut(s)	570, 571, 794, 884
BmrI	ACTGGG	1 cut(s)	648
BmsI	GCATC	2 cut(s)	517, 824
BmuI	ACTGGG	1 cut(s)	648
Bpu10I	CCTNAGC	1 cut(s)	294
BpuEI	CTTGAG	1 cut(s)	821
BpuMI	CCSGG	2 cut(s)	570, 571
BsaI	GGTCTC	1 cut(s)	202
BsaJI	CCNNGG	6 cut(s)	324, 569, 570, 793, 882, 911
BsaWI	WCCGGW	1 cut(s)	182
BsaXI	ACNNNNNCTCC	2 cut(s)	152, 182
Bsc4I	CCNNNNNNNGG	3 cut(s)	96, 551, 575
Bse1I	ACTGG	4 cut(s)	556, 643, 834, 925
Bse3DI	GCAATG	1 cut(s)	672
BseAI	TCCGGA	1 cut(s)	182
BseBI	CCWGG	2 cut(s)	794, 884
BseDI	CCNNGG	6 cut(s)	324, 569, 570, 793, 882, 911
BseGI	GGATG	1 cut(s)	777
BseLI	CCNNNNNNNGG	3 cut(s)	96, 551, 575
BseMI	GCAATG	1 cut(s)	672
BseMII	CTCAG	3 cut(s)	46, 369, 888
BseNI	ACTGG	4 cut(s)	556, 643, 834, 925
BseXI	GCAGC	3 cut(s)	390, 479, 899
BsgI	GTGCAG	1 cut(s)	357
BsiHKCI	CYCGRG	1 cut(s)	569
BsiSI	CCGG	3 cut(s)	115, 183, 570
BslFI	GGGAC	3 cut(s)	13, 595, 810
BslI	CCNNNNNNNGG	3 cut(s)	96, 551, 575
BsmAI	GTCTC	1 cut(s)	202
BsmFI	GGGAC	3 cut(s)	13, 595, 810
BsmI	GAATGC	1 cut(s)	845
Bso31I	GGTCTC	1 cut(s)	202
BsoBI	CYCGRG	1 cut(s)	569
Bsp13I	TCCGGA	1 cut(s)	182
Bsp143I	GATC	4 cut(s)	306, 505, 611, 868
BspACI	CCGC	2 cut(s)	310, 904
BspCNI	CTCAG	3 cut(s)	45, 370, 889
BspEI	TCCGGA	1 cut(s)	182
BspLI	GGNNCC	1 cut(s)	756
BspMI	ACCTGC	1 cut(s)	566
BspPI	GGATC	1 cut(s)	301
BspTNI	GGTCTC	1 cut(s)	202
BsrDI	GCAATG	1 cut(s)	672
BsrI	ACTGG	4 cut(s)	556, 643, 834, 925
BssECI	CCNNGG	6 cut(s)	324, 569, 570, 793, 882, 911
BssMI	GATC	4 cut(s)	306, 505, 611, 868
BssNAI	GTATAC	1 cut(s)	918
BssT1I	CCWWGG	2 cut(s)	324, 911
Bst1107I	GTATAC	1 cut(s)	918
Bst2UI	CCWGG	2 cut(s)	794, 884
Bst4CI	ACNGT	1 cut(s)	692
BstAPI	GCANNNNNTGC	1 cut(s)	893
BstC8I	GCNNGC	3 cut(s)	408, 699, 736
BstDEI	CTNAG	5 cut(s)	20, 32, 294, 378, 897
BstF5I	GGATG	1 cut(s)	777
BstKTI	GATC	4 cut(s)	309, 508, 614, 871
BstMAI	GTCTC	1 cut(s)	202
BstMBI	GATC	4 cut(s)	306, 505, 611, 868
BstMWI	GCNNNNNNNGC	4 cut(s)	707, 782, 887, 893
BstNI	CCWGG	2 cut(s)	794, 884
BstNSI	RCATGY	1 cut(s)	701
BstSCI	CCNGG	4 cut(s)	568, 569, 792, 882
BstV1I	GCAGC	3 cut(s)	390, 479, 899
BstZ17I	GTATAC	1 cut(s)	918
BtgZI	GCGATG	1 cut(s)	433
BtsCI	GGATG	1 cut(s)	777
BtsIMutI	CAGTG	1 cut(s)	827
BveI	ACCTGC	1 cut(s)	566
Cac8I	GCNNGC	3 cut(s)	408, 699, 736
CaiI	CAGNNNCTG	1 cut(s)	551
Cfr13I	GGNCC	1 cut(s)	755
Cfr9I	CCCGGG	1 cut(s)	569
Csp6I	GTAC	1 cut(s)	431
CviAII	CATG	2 cut(s)	501, 698
CviQI	GTAC	1 cut(s)	431
DdeI	CTNAG	5 cut(s)	20, 32, 294, 378, 897
DpnI	GATC	4 cut(s)	308, 507, 613, 870
DpnII	GATC	4 cut(s)	306, 505, 611, 868
Eco130I	CCWWGG	2 cut(s)	324, 911
Eco31I	GGTCTC	1 cut(s)	202
Eco47I	GGWCC	1 cut(s)	755
Eco88I	CYCGRG	1 cut(s)	569
EcoRII	CCWGG	2 cut(s)	792, 882
EcoT14I	CCWWGG	2 cut(s)	324, 911
ErhI	CCWWGG	2 cut(s)	324, 911
FaeI	CATG	2 cut(s)	504, 701
FaqI	GGGAC	3 cut(s)	13, 595, 810
FatI	CATG	2 cut(s)	500, 697
FblI	GTMKAC	1 cut(s)	917
Fnu4HI	GCNGC	3 cut(s)	404, 468, 888
FokI	GGATG	1 cut(s)	784
Fsp4HI	GCNGC	3 cut(s)	404, 468, 888
FspBI	CTAG	3 cut(s)	128, 425, 597
GluI	GCNGC	3 cut(s)	404, 468, 888
HapII	CCGG	3 cut(s)	115, 183, 570
Hin1II	CATG	2 cut(s)	504, 701
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HinfI	GANTC	8 cut(s)	118, 124, 131, 173, 179, 186, 284, 583
HpaII	CCGG	3 cut(s)	115, 183, 570
HphI	GGTGA	1 cut(s)	716
Hpy166II	GTNNAC	4 cut(s)	154, 397, 482, 918
Hpy188I	TCNGA	5 cut(s)	35, 123, 172, 178, 513
Hpy188III	TCNNGA	5 cut(s)	65, 128, 183, 386, 425
Hpy8I	GTNNAC	4 cut(s)	154, 397, 482, 918
HpyAV	CCTTC	3 cut(s)	346, 455, 745
HpyCH4III	ACNGT	1 cut(s)	692
HpyCH4IV	ACGT	1 cut(s)	263
HpyCH4V	TGCA	7 cut(s)	227, 256, 338, 374, 530, 697, 859
HpyF10VI	GCNNNNNNNGC	4 cut(s)	707, 782, 887, 893
HpyF3I	CTNAG	5 cut(s)	20, 32, 294, 378, 897
HpySE526I	ACGT	1 cut(s)	263
Hsp92II	CATG	2 cut(s)	504, 701
Kpn2I	TCCGGA	1 cut(s)	182
Kzo9I	GATC	4 cut(s)	306, 505, 611, 868
LmnI	GCTCC	1 cut(s)	341
Lsp1109I	GCAGC	3 cut(s)	390, 479, 899
LweI	GCATC	2 cut(s)	517, 824
MaeI	CTAG	3 cut(s)	128, 425, 597
MaeII	ACGT	1 cut(s)	263
MalI	GATC	4 cut(s)	308, 507, 613, 870
MboI	GATC	4 cut(s)	306, 505, 611, 868
MboII	GAAGA	7 cut(s)	500, 536, 621, 658, 845, 848, 878
MluCI	AATT	2 cut(s)	564, 685
MlyI	GAGTC	4 cut(s)	112, 140, 167, 577
MmeI	TCCRAC	2 cut(s)	195, 586
MnlI	CCTC	8 cut(s)	41, 64, 151, 167, 373, 421, 636, 796
MroI	TCCGGA	1 cut(s)	182
MslI	CAYNNNNRTG	1 cut(s)	702
MspI	CCGG	3 cut(s)	115, 183, 570
MspR9I	CCNGG	4 cut(s)	570, 571, 794, 884
Mva1269I	GAATGC	1 cut(s)	845
MvaI	CCWGG	2 cut(s)	794, 884
MwoI	GCNNNNNNNGC	4 cut(s)	707, 782, 887, 893
NciI	CCSGG	2 cut(s)	570, 571
NdeII	GATC	4 cut(s)	306, 505, 611, 868
NlaIII	CATG	2 cut(s)	504, 701
NlaIV	GGNNCC	1 cut(s)	756
NspI	RCATGY	1 cut(s)	701
PaeI	GCATGC	1 cut(s)	701
PaqCI	CACCTGC	1 cut(s)	566
PctI	GAATGC	1 cut(s)	845
PfeI	GAWTC	4 cut(s)	124, 179, 186, 284
PflMI	CCANNNNNTGG	1 cut(s)	551
PkrI	GCNGC	3 cut(s)	405, 469, 889
PleI	GAGTC	4 cut(s)	112, 139, 167, 577
PpsI	GAGTC	4 cut(s)	112, 139, 167, 577
Psp6I	CCWGG	2 cut(s)	792, 882
PspGI	CCWGG	2 cut(s)	792, 882
PspN4I	GGNNCC	1 cut(s)	756
PspPI	GGNCC	1 cut(s)	755
PstNI	CAGNNNCTG	1 cut(s)	551
RsaI	GTAC	1 cut(s)	432
RsaNI	GTAC	1 cut(s)	431
RseI	CAYNNNNRTG	1 cut(s)	702
SatI	GCNGC	3 cut(s)	404, 468, 888
Sau3AI	GATC	4 cut(s)	306, 505, 611, 868
Sau96I	GGNCC	1 cut(s)	755
SchI	GAGTC	4 cut(s)	112, 140, 167, 577
ScrFI	CCNGG	4 cut(s)	570, 571, 794, 884
SfaNI	GCATC	2 cut(s)	517, 824
SinI	GGWCC	1 cut(s)	755
SmaI	CCCGGG	1 cut(s)	571
SmiMI	CAYNNNNRTG	1 cut(s)	702
SmlI	CTYRAG	1 cut(s)	800
SmoI	CTYRAG	1 cut(s)	800
SphI	GCATGC	1 cut(s)	701
Sse9I	AATT	2 cut(s)	564, 685
SsiI	CCGC	2 cut(s)	310, 904
SspMI	CTAG	3 cut(s)	128, 425, 597
StyD4I	CCNGG	4 cut(s)	568, 569, 792, 882
StyI	CCWWGG	2 cut(s)	324, 911
TaaI	ACNGT	1 cut(s)	692
TaiI	ACGT	1 cut(s)	266
TasI	AATT	2 cut(s)	564, 685
TfiI	GAWTC	4 cut(s)	124, 179, 186, 284
TscAI	CASTG	1 cut(s)	834
TseI	GCWGC	3 cut(s)	403, 467, 887
TspDTI	ATGAA	2 cut(s)	276, 861
TspGWI	ACGGA	1 cut(s)	139
TspMI	CCCGGG	1 cut(s)	569
TspRI	CASTG	1 cut(s)	834
Van91I	CCANNNNNTGG	1 cut(s)	551
VpaK11BI	GGWCC	1 cut(s)	755
XbaI	TCTAGA	2 cut(s)	127, 424
XceI	RCATGY	1 cut(s)	701
XmaI	CCCGGG	1 cut(s)	569
XmiI	GTMKAC	1 cut(s)	917
XspI	CTAG	3 cut(s)	128, 425, 597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.