Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0013516

Physical Location & Seq

Genomic Coordinates Reverse (-)

20302884 .. 20305738

Gene Structure 2855 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G018690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGGTGCTTTCAGAGTTCTAAGCAAGTCCCTGAGACATTACACACCCAAAGCCTCTATATTTCCAGAGAATTCAATCACTCCCAGGCCCAACAAATGGCTTCACCAAACTCGCCGGACTCTGATTCTAGAGTCAGCACCCTCTCAGTCCGTCAACCTCCACAGGCTCTCCGACTCCGATTCCGGAATCGTTGAAGTTAGTTTGGAGAGACCCCAAGTGAGAAATGCAATAGGGAAAGATATGCTCAAAGGTTTGCAGAACACGTTTGAAGCTATCAGTAAAGATTCATCTGCTAATGTTTTGTTGATCCGCAGTAAAGTTCCCAAGGTGTTCTGTGCAGGAGCAGATTTGAAGGAACGCAAGATGATGACTGCAACTGAGGTTCAAGATTTCGTGAACAAGCTGCGTGCCACATTCTCATTTCTAGAGGTACTTCCCATTCCTACCATCGCTGTCATTGAAGGGGCAGCATTGGGTGGTGGACTTGAAATGGCTTTATCATGCGATCTTCGGATATGTGGAGAAGATGCAGTATTGGGATTGCCAGAAACTGGACTTGCTATAATTCCTGGGGCTGGTGGGACTCAACGACTTCCTAGAGTGGTTGGAAGATCAATAGCAAAGGAACTCATATTGACTGGGAGGAAGATTGGTGGCAGAGAAGCAATGTCAATGGGTCTGGTAAACTACTGTGTCCATGCTGGTGAAGCTTATCTAAAGGCACTTGAAGTTGCTCGCAATATAAATGAGAAGGGTCCAATAGCAATAAGGATGGCGAAAAGAGCTATTGACCAGGGACTTGAGGTAGATAGGGCATCAGCTTTGGCACTGGAAGAAGAATGCTATGAGCAGACCTTGCACACAGAAGATCGTTTGGAAGCCCTGGCAGCATTTGCTGAGAAGCGGAAGCCAAGGTATAATGGAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004300 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0016042 GO:0016054 GO:0016829 GO:0016835 GO:0016836 GO:0019395 GO:0019752 GO:0030258 GO:0032787 GO:0034440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0055114 GO:0071704 GO:0072329 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00280 ko01100 map00280 map01100

Pfam Domains

Protein Families

ECH_1

Protein Analysis

309

Amino Acids

33.74

Weight (kDa)

9.16

Isoelectric Point (pI)

44.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ECH_1	PF00378	60 - 308	4.6e-61	Enoyl-CoA hydratase/isomerase
ECH_2	PF16113	66 - 235	8.3e-32	Enoyl-CoA hydratase/isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16800
fragaria_vesca	FvH4_5g19890
malus_domestica	MD04G1057400.v1.1
prunus_persica	Prupe.5G061300_v2.0.a1 Prupe.5G061300_v2.0.a1
pyrus_communis	pycom04g05100
rosa_chinensis	RchiOBHm_Chr7g0204691
rosa_laevigata	RLG00000003437
rosa_multiflora	Rmu_sc0003221.1_g000066 Rmu_sc0007104.1_g000007
rosa_roxburghii	Rroxscaffold_3G00252860
rosa_rugosa	Rorug07G0085700 Rorug07G0085800
rosa_samantha	Rh7AG215600 Rh7BG212800 Rh7CG228700 Rh7DG223300
rosa_wichuraiana	Rw7G018690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	96, 551
AccIII	TCCGGA	1 cut(s)	182
AciI	CCGC	2 cut(s)	310, 904
AclWI	GGATC	1 cut(s)	301
AcsI	RAATTY	1 cut(s)	70
AfaI	GTAC	1 cut(s)	432
AfiI	CCNNNNNNNGG	3 cut(s)	96, 551, 575
AflIII	ACRYGT	1 cut(s)	261
AgsI	TTSAA	8 cut(s)	75, 194, 269, 352, 386, 461, 488, 728
AjnI	CCWGG	4 cut(s)	83, 568, 792, 882
AluBI	AGCT	5 cut(s)	272, 403, 710, 785, 821
AluI	AGCT	5 cut(s)	272, 403, 710, 785, 821
Alw26I	GTCTC	2 cut(s)	28, 202
AlwI	GGATC	1 cut(s)	301
AlwNI	CAGNNNCTG	1 cut(s)	551
Aor13HI	TCCGGA	1 cut(s)	182
AoxI	GGCC	1 cut(s)	86
ApeKI	GCWGC	3 cut(s)	403, 467, 887
ApoI	RAATTY	1 cut(s)	70
AspS9I	GGNCC	2 cut(s)	87, 755
AsuHPI	GGTGA	2 cut(s)	95, 716
AvaII	GGWCC	1 cut(s)	755
BbvI	GCAGC	3 cut(s)	390, 479, 899
BccI	CCATC	2 cut(s)	455, 766
BciT130I	CCWGG	4 cut(s)	85, 570, 794, 884
BcoDI	GTCTC	2 cut(s)	28, 202
BfaI	CTAG	3 cut(s)	128, 425, 597
BisI	GCNGC	3 cut(s)	404, 468, 888
BlsI	GCNGC	3 cut(s)	405, 469, 889
Bme1390I	CCNGG	4 cut(s)	85, 570, 794, 884
Bme18I	GGWCC	1 cut(s)	755
BmgT120I	GGNCC	2 cut(s)	87, 755
BmiI	GGNNCC	1 cut(s)	756
BmrFI	CCNGG	4 cut(s)	85, 570, 794, 884
BmrI	ACTGGG	1 cut(s)	648
BmsI	GCATC	2 cut(s)	517, 824
BmuI	ACTGGG	1 cut(s)	648
BpuEI	CTTGAG	1 cut(s)	821
BsaI	GGTCTC	1 cut(s)	202
BsaJI	CCNNGG	6 cut(s)	83, 324, 569, 793, 882, 911
BsaWI	WCCGGW	1 cut(s)	182
BsaXI	ACNNNNNCTCC	2 cut(s)	152, 182
Bsc4I	CCNNNNNNNGG	3 cut(s)	96, 551, 575
Bse1I	ACTGG	3 cut(s)	556, 643, 834
Bse3DI	GCAATG	1 cut(s)	672
BseAI	TCCGGA	1 cut(s)	182
BseBI	CCWGG	4 cut(s)	85, 570, 794, 884
BseDI	CCNNGG	6 cut(s)	83, 324, 569, 793, 882, 911
BseGI	GGATG	1 cut(s)	777
BseLI	CCNNNNNNNGG	3 cut(s)	96, 551, 575
BseMI	GCAATG	1 cut(s)	672
BseMII	CTCAG	4 cut(s)	23, 158, 369, 888
BseNI	ACTGG	3 cut(s)	556, 643, 834
BseXI	GCAGC	3 cut(s)	390, 479, 899
BsgI	GTGCAG	1 cut(s)	357
BshFI	GGCC	1 cut(s)	88
BsiSI	CCGG	2 cut(s)	115, 183
BslFI	GGGAC	3 cut(s)	13, 595, 810
BslI	CCNNNNNNNGG	3 cut(s)	96, 551, 575
BsmAI	GTCTC	2 cut(s)	28, 202
BsmFI	GGGAC	3 cut(s)	13, 595, 810
BsmI	GAATGC	1 cut(s)	845
BsnI	GGCC	1 cut(s)	88
Bso31I	GGTCTC	1 cut(s)	202
Bsp13I	TCCGGA	1 cut(s)	182
Bsp143I	GATC	4 cut(s)	306, 505, 611, 868
BspACI	CCGC	2 cut(s)	310, 904
BspANI	GGCC	1 cut(s)	88
BspCNI	CTCAG	4 cut(s)	24, 157, 370, 889
BspEI	TCCGGA	1 cut(s)	182
BspLI	GGNNCC	1 cut(s)	756
BspPI	GGATC	1 cut(s)	301
BspTNI	GGTCTC	1 cut(s)	202
BsrDI	GCAATG	1 cut(s)	672
BsrI	ACTGG	3 cut(s)	556, 643, 834
BssECI	CCNNGG	6 cut(s)	83, 324, 569, 793, 882, 911
BssMI	GATC	4 cut(s)	306, 505, 611, 868
BssT1I	CCWWGG	2 cut(s)	324, 911
Bst2UI	CCWGG	4 cut(s)	85, 570, 794, 884
Bst4CI	ACNGT	1 cut(s)	692
BstAPI	GCANNNNNTGC	2 cut(s)	856, 893
BstC8I	GCNNGC	2 cut(s)	408, 736
BstDEI	CTNAG	5 cut(s)	20, 32, 144, 378, 897
BstF5I	GGATG	1 cut(s)	777
BstKTI	GATC	4 cut(s)	309, 508, 614, 871
BstMAI	GTCTC	2 cut(s)	28, 202
BstMBI	GATC	4 cut(s)	306, 505, 611, 868
BstMWI	GCNNNNNNNGC	5 cut(s)	707, 782, 856, 887, 893
BstNI	CCWGG	4 cut(s)	85, 570, 794, 884
BstSCI	CCNGG	4 cut(s)	83, 568, 792, 882
BstV1I	GCAGC	3 cut(s)	390, 479, 899
BsuRI	GGCC	1 cut(s)	88
BtgZI	GCGATG	1 cut(s)	433
BtsCI	GGATG	1 cut(s)	777
BtsIMutI	CAGTG	1 cut(s)	827
Cac8I	GCNNGC	2 cut(s)	408, 736
CaiI	CAGNNNCTG	1 cut(s)	551
Cfr13I	GGNCC	2 cut(s)	87, 755
Csp6I	GTAC	1 cut(s)	431
CviAII	CATG	2 cut(s)	501, 698
CviQI	GTAC	1 cut(s)	431
DdeI	CTNAG	5 cut(s)	20, 32, 144, 378, 897
DpnI	GATC	4 cut(s)	308, 507, 613, 870
DpnII	GATC	4 cut(s)	306, 505, 611, 868
Eco130I	CCWWGG	2 cut(s)	324, 911
Eco31I	GGTCTC	1 cut(s)	202
Eco47I	GGWCC	1 cut(s)	755
EcoRI	GAATTC	1 cut(s)	70
EcoRII	CCWGG	4 cut(s)	83, 568, 792, 882
EcoT14I	CCWWGG	2 cut(s)	324, 911
ErhI	CCWWGG	2 cut(s)	324, 911
FaeI	CATG	2 cut(s)	504, 701
FaqI	GGGAC	3 cut(s)	13, 595, 810
FatI	CATG	2 cut(s)	500, 697
Fnu4HI	GCNGC	3 cut(s)	404, 468, 888
FokI	GGATG	1 cut(s)	784
Fsp4HI	GCNGC	3 cut(s)	404, 468, 888
FspBI	CTAG	3 cut(s)	128, 425, 597
GluI	GCNGC	3 cut(s)	404, 468, 888
HaeIII	GGCC	1 cut(s)	88
HapII	CCGG	2 cut(s)	115, 183
Hin1II	CATG	2 cut(s)	504, 701
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HindIII	AAGCTT	1 cut(s)	708
HinfI	GANTC	8 cut(s)	118, 124, 131, 173, 179, 186, 284, 583
HpaII	CCGG	2 cut(s)	115, 183
HphI	GGTGA	2 cut(s)	95, 716
Hpy166II	GTNNAC	4 cut(s)	154, 397, 482, 685
Hpy188I	TCNGA	5 cut(s)	14, 123, 172, 178, 513
Hpy188III	TCNNGA	6 cut(s)	65, 128, 183, 386, 394, 425
Hpy8I	GTNNAC	4 cut(s)	154, 397, 482, 685
HpyAV	CCTTC	3 cut(s)	346, 455, 745
HpyCH4III	ACNGT	1 cut(s)	692
HpyCH4IV	ACGT	1 cut(s)	263
HpyCH4V	TGCA	6 cut(s)	227, 256, 338, 374, 530, 859
HpyF10VI	GCNNNNNNNGC	5 cut(s)	707, 782, 856, 887, 893
HpyF3I	CTNAG	5 cut(s)	20, 32, 144, 378, 897
HpySE526I	ACGT	1 cut(s)	263
Hsp92II	CATG	2 cut(s)	504, 701
Kpn2I	TCCGGA	1 cut(s)	182
Kzo9I	GATC	4 cut(s)	306, 505, 611, 868
LmnI	GCTCC	1 cut(s)	341
Lsp1109I	GCAGC	3 cut(s)	390, 479, 899
LweI	GCATC	2 cut(s)	517, 824
MaeI	CTAG	3 cut(s)	128, 425, 597
MaeII	ACGT	1 cut(s)	263
MalI	GATC	4 cut(s)	308, 507, 613, 870
MboI	GATC	4 cut(s)	306, 505, 611, 868
MboII	GAAGA	7 cut(s)	500, 536, 621, 658, 845, 848, 878
MluCI	AATT	2 cut(s)	70, 564
MlyI	GAGTC	4 cut(s)	112, 140, 167, 577
MmeI	TCCRAC	2 cut(s)	195, 586
MnlI	CCTC	7 cut(s)	64, 151, 167, 373, 421, 636, 796
MroI	TCCGGA	1 cut(s)	182
MslI	CAYNNNNRTG	1 cut(s)	702
MspI	CCGG	2 cut(s)	115, 183
MspR9I	CCNGG	4 cut(s)	85, 570, 794, 884
Mva1269I	GAATGC	1 cut(s)	845
MvaI	CCWGG	4 cut(s)	85, 570, 794, 884
MwoI	GCNNNNNNNGC	5 cut(s)	707, 782, 856, 887, 893
NdeII	GATC	4 cut(s)	306, 505, 611, 868
NlaIII	CATG	2 cut(s)	504, 701
NlaIV	GGNNCC	1 cut(s)	756
PctI	GAATGC	1 cut(s)	845
PfeI	GAWTC	4 cut(s)	124, 179, 186, 284
PflMI	CCANNNNNTGG	2 cut(s)	96, 551
PkrI	GCNGC	3 cut(s)	405, 469, 889
PleI	GAGTC	4 cut(s)	112, 139, 167, 577
PpsI	GAGTC	4 cut(s)	112, 139, 167, 577
Psp6I	CCWGG	4 cut(s)	83, 568, 792, 882
PspGI	CCWGG	4 cut(s)	83, 568, 792, 882
PspN4I	GGNNCC	1 cut(s)	756
PspPI	GGNCC	2 cut(s)	87, 755
PstNI	CAGNNNCTG	1 cut(s)	551
RsaI	GTAC	1 cut(s)	432
RsaNI	GTAC	1 cut(s)	431
RseI	CAYNNNNRTG	1 cut(s)	702
SatI	GCNGC	3 cut(s)	404, 468, 888
Sau3AI	GATC	4 cut(s)	306, 505, 611, 868
Sau96I	GGNCC	2 cut(s)	87, 755
SchI	GAGTC	4 cut(s)	112, 140, 167, 577
ScrFI	CCNGG	4 cut(s)	85, 570, 794, 884
SfaNI	GCATC	2 cut(s)	517, 824
SinI	GGWCC	1 cut(s)	755
SmiMI	CAYNNNNRTG	1 cut(s)	702
SmlI	CTYRAG	1 cut(s)	800
SmoI	CTYRAG	1 cut(s)	800
Sse9I	AATT	2 cut(s)	70, 564
SsiI	CCGC	2 cut(s)	310, 904
SspMI	CTAG	3 cut(s)	128, 425, 597
StyD4I	CCNGG	4 cut(s)	83, 568, 792, 882
StyI	CCWWGG	2 cut(s)	324, 911
TaaI	ACNGT	1 cut(s)	692
TaiI	ACGT	1 cut(s)	266
TasI	AATT	2 cut(s)	70, 564
TfiI	GAWTC	4 cut(s)	124, 179, 186, 284
TscAI	CASTG	1 cut(s)	834
TseI	GCWGC	3 cut(s)	403, 467, 887
TspDTI	ATGAA	1 cut(s)	276
TspGWI	ACGGA	1 cut(s)	139
TspRI	CASTG	1 cut(s)	834
Van91I	CCANNNNNTGG	2 cut(s)	96, 551
VpaK11BI	GGWCC	1 cut(s)	755
XapI	RAATTY	1 cut(s)	70
XbaI	TCTAGA	2 cut(s)	127, 424
XspI	CTAG	3 cut(s)	128, 425, 597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.