Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0013516

Physical Location & Seq

Genomic Coordinates Forward (+)

4820469 .. 4823075

Gene Structure 2607 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g05100.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGCGGGCGGTTTAAGAGTCATAAGTAGGTCACTGAAACATTACAAACCCACAACCTCTATATTTTCAGAGAATTCACTCTATCCTCAATCCAACCAATGGATTTACCAAACTCGCCGGACTCTGATTTTAGAATCAGCACCGTCACGCACCGTCACCCTCCACCGACTCCCTGACTTTGATTCCGGGATTATTGAGGTTAGGTTGGAGAGGCCGGAGGTGAGAAATGCAATTGGGAAAGATATGCTGAGAGGTTTACAGAACACCTTTGAAGCTGTCAGTAAGGATTCTTCTGCTAATGTTTTGTTGATCCGCAGCAAAGTTCCCAAGGTGTTCTGTGCTGGAGCAGATTTAAAGGAACGGAAAATGATGAGTGCATCTGAAGTTCGAGATTTTGTCAACACGCTGCGTGCCACATTCTCGTTTTTAGAGGTACTTTCTATTCCGACAATTGCTGTCATTGAAGGAGCAGCATTGGGTGGTGGACTTGAAATGGCTTTATCATGCGATCTTCGGATATGTGGAGAAGATGCAGTGATGGGCTTGCCAGAAACAGGACTTGCTATCATTCCTGGGGCAGGTGGAACACAGCGGCTTCCTAGATTGGTTGGAAAAGCAATATCAAAGGAACTCATATTCACTGGTAGGAAGATTGGTGGCAGGGAAGCAGTGTCAATGGGTTTGGTAAATTACTGTGTTCCTGCTGGTGAAGCTCATCTAAAGGCACTTGAAGTTGCTCGCAATATAAATGAGAAGGGTCCAATAGCAATAAGGATGGCAAAAAAAGCTATTGATGAGGGACTGGAGGTAGATAAGACCTCAGCTTTGGCTCTTGAAGAACATTGCTATGAAAAGACGTTGAACACAAATGATCGATCGGAAGCCCTATCAGCATTTGCTGAGAAGCGAAAGCCAAAGTATACTGGAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004300 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0016042 GO:0016054 GO:0016829 GO:0016835 GO:0016836 GO:0019395 GO:0019752 GO:0030258 GO:0032787 GO:0034440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0055114 GO:0071704 GO:0072329 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00280 ko01100 map00280 map01100

Pfam Domains

Protein Families

ECH_1

Protein Analysis

311

Amino Acids

33.82

Weight (kDa)

9.02

Isoelectric Point (pI)

40.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16800
fragaria_vesca	FvH4_5g19890
malus_domestica	MD04G1057400.v1.1
prunus_persica	Prupe.5G061300_v2.0.a1 Prupe.5G061300_v2.0.a1
pyrus_communis	pycom04g05100
rosa_chinensis	RchiOBHm_Chr7g0204691
rosa_laevigata	RLG00000003437
rosa_multiflora	Rmu_sc0003221.1_g000066 Rmu_sc0007104.1_g000007
rosa_roxburghii	Rroxscaffold_3G00252860
rosa_rugosa	Rorug07G0085700 Rorug07G0085800
rosa_samantha	Rh7AG215600 Rh7BG212800 Rh7CG228700 Rh7DG223300
rosa_wichuraiana	Rw7G018690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	569
Acc36I	ACCTGC	1 cut(s)	569
AccB7I	CCANNNNNTGG	1 cut(s)	99
AccI	GTMKAC	1 cut(s)	920
AciI	CCGC	4 cut(s)	5, 9, 313, 592
AclWI	GGATC	1 cut(s)	304
AcsI	RAATTY	1 cut(s)	73
AcuI	CTGAAG	1 cut(s)	402
AfaI	GTAC	1 cut(s)	435
AfiI	CCNNNNNNNGG	3 cut(s)	99, 554, 578
AgsI	TTSAA	6 cut(s)	272, 464, 491, 731, 836, 862
AjnI	CCWGG	1 cut(s)	571
AluBI	AGCT	4 cut(s)	275, 713, 788, 824
AluI	AGCT	4 cut(s)	275, 713, 788, 824
AlwI	GGATC	1 cut(s)	304
AoxI	GGCC	1 cut(s)	212
ApeKI	GCWGC	3 cut(s)	315, 406, 470
ApoI	RAATTY	1 cut(s)	73
ArsI	GACNNNNNNTTYG	2 cut(s)	808, 840
AspS9I	GGNCC	1 cut(s)	758
AsuC2I	CCSGG	1 cut(s)	187
AsuHPI	GGTGA	3 cut(s)	148, 232, 719
AvaII	GGWCC	1 cut(s)	758
BarI	GAAGNNNNNNTAC	2 cut(s)	274, 306
BbvCI	CCTCAGC	1 cut(s)	820
BbvI	GCAGC	3 cut(s)	327, 393, 482
BccI	CCATC	2 cut(s)	532, 769
BciT130I	CCWGG	1 cut(s)	573
BcnI	CCSGG	1 cut(s)	187
BfaI	CTAG	1 cut(s)	600
BfuAI	ACCTGC	1 cut(s)	569
BisI	GCNGC	4 cut(s)	316, 407, 471, 593
BlsI	GCNGC	4 cut(s)	317, 408, 472, 594
Bme1390I	CCNGG	2 cut(s)	187, 573
Bme18I	GGWCC	1 cut(s)	758
BmgT120I	GGNCC	1 cut(s)	758
BmiI	GGNNCC	1 cut(s)	759
BmrFI	CCNGG	2 cut(s)	187, 573
BmsI	GCATC	2 cut(s)	386, 520
BpmI	CTGGAG	2 cut(s)	363, 824
Bpu10I	CCTNAGC	1 cut(s)	820
BpuMI	CCSGG	1 cut(s)	187
Bsa29I	ATCGAT	1 cut(s)	874
BsaJI	CCNNGG	2 cut(s)	327, 572
Bsc4I	CCNNNNNNNGG	3 cut(s)	99, 554, 578
Bse1I	ACTGG	3 cut(s)	646, 807, 928
Bse3DI	GCAATG	1 cut(s)	841
BseBI	CCWGG	1 cut(s)	573
BseCI	ATCGAT	1 cut(s)	874
BseDI	CCNNGG	2 cut(s)	327, 572
BseGI	GGATG	1 cut(s)	780
BseLI	CCNNNNNNNGG	3 cut(s)	99, 554, 578
BseMI	GCAATG	1 cut(s)	841
BseMII	CTCAG	3 cut(s)	239, 834, 891
BseNI	ACTGG	3 cut(s)	646, 807, 928
BseXI	GCAGC	3 cut(s)	327, 393, 482
Bsh1285I	CGRYCG	1 cut(s)	878
BshFI	GGCC	1 cut(s)	214
BshVI	ATCGAT	1 cut(s)	874
BsiEI	CGRYCG	1 cut(s)	878
BsiSI	CCGG	3 cut(s)	118, 186, 215
BslFI	GGGAC	1 cut(s)	813
BslI	CCNNNNNNNGG	3 cut(s)	99, 554, 578
BsmFI	GGGAC	1 cut(s)	813
BsnI	GGCC	1 cut(s)	214
Bsp143I	GATC	4 cut(s)	309, 508, 871, 875
BspACI	CCGC	4 cut(s)	5, 9, 313, 592
BspANI	GGCC	1 cut(s)	214
BspCNI	CTCAG	3 cut(s)	240, 833, 892
BspDI	ATCGAT	1 cut(s)	874
BspLI	GGNNCC	1 cut(s)	759
BspMI	ACCTGC	1 cut(s)	569
BspPI	GGATC	1 cut(s)	304
BsrDI	GCAATG	1 cut(s)	841
BsrI	ACTGG	3 cut(s)	646, 807, 928
BssECI	CCNNGG	2 cut(s)	327, 572
BssMI	GATC	4 cut(s)	309, 508, 871, 875
BssNAI	GTATAC	1 cut(s)	921
BssT1I	CCWWGG	1 cut(s)	327
Bst1107I	GTATAC	1 cut(s)	921
Bst2UI	CCWGG	1 cut(s)	573
Bst4CI	ACNGT	3 cut(s)	144, 154, 695
BstC8I	GCNNGC	4 cut(s)	7, 411, 545, 739
BstDEI	CTNAG	3 cut(s)	248, 820, 900
BstENI	CCTNNNNNAGG	1 cut(s)	576
BstF5I	GGATG	1 cut(s)	780
BstKTI	GATC	4 cut(s)	312, 511, 874, 878
BstMBI	GATC	4 cut(s)	309, 508, 871, 875
BstMCI	CGRYCG	1 cut(s)	878
BstMWI	GCNNNNNNNGC	3 cut(s)	710, 785, 890
BstNI	CCWGG	1 cut(s)	573
BstSCI	CCNGG	2 cut(s)	185, 571
BstV1I	GCAGC	3 cut(s)	327, 393, 482
BstZ17I	GTATAC	1 cut(s)	921
Bsu15I	ATCGAT	1 cut(s)	874
BsuRI	GGCC	1 cut(s)	214
BsuTUI	ATCGAT	1 cut(s)	874
BtsCI	GGATG	1 cut(s)	780
BtsI	GCAGTG	2 cut(s)	540, 675
BtsIMutI	CAGTG	4 cut(s)	32, 540, 639, 675
BveI	ACCTGC	1 cut(s)	569
Cac8I	GCNNGC	4 cut(s)	7, 411, 545, 739
Cfr13I	GGNCC	1 cut(s)	758
ClaI	ATCGAT	1 cut(s)	874
Csp6I	GTAC	1 cut(s)	434
CviAII	CATG	1 cut(s)	504
CviQI	GTAC	1 cut(s)	434
DdeI	CTNAG	3 cut(s)	248, 820, 900
DpnI	GATC	4 cut(s)	311, 510, 873, 877
DpnII	GATC	4 cut(s)	309, 508, 871, 875
DraI	TTTAAA	1 cut(s)	354
Eco130I	CCWWGG	1 cut(s)	327
Eco47I	GGWCC	1 cut(s)	758
Eco57I	CTGAAG	1 cut(s)	402
EcoNI	CCTNNNNNAGG	1 cut(s)	576
EcoRI	GAATTC	1 cut(s)	73
EcoRII	CCWGG	1 cut(s)	571
EcoT14I	CCWWGG	1 cut(s)	327
ErhI	CCWWGG	1 cut(s)	327
FaeI	CATG	1 cut(s)	507
FaiI	YATR	9 cut(s)	23, 62, 245, 505, 520, 635, 746, 849, 921
FaqI	GGGAC	1 cut(s)	813
FatI	CATG	1 cut(s)	503
FblI	GTMKAC	1 cut(s)	920
Fnu4HI	GCNGC	4 cut(s)	316, 407, 471, 593
FokI	GGATG	1 cut(s)	787
Fsp4HI	GCNGC	4 cut(s)	316, 407, 471, 593
FspBI	CTAG	1 cut(s)	600
GluI	GCNGC	4 cut(s)	316, 407, 471, 593
GsuI	CTGGAG	2 cut(s)	363, 824
HaeIII	GGCC	1 cut(s)	214
HapII	CCGG	3 cut(s)	118, 186, 215
Hin1II	CATG	1 cut(s)	507
HincII	GTYRAC	1 cut(s)	400
HindII	GTYRAC	1 cut(s)	400
HinfI	GANTC	6 cut(s)	18, 121, 134, 168, 182, 287
HpaII	CCGG	3 cut(s)	118, 186, 215
HphI	GGTGA	3 cut(s)	148, 232, 719
Hpy166II	GTNNAC	4 cut(s)	257, 400, 485, 921
Hpy188I	TCNGA	6 cut(s)	70, 126, 382, 447, 516, 880
Hpy188III	TCNNGA	2 cut(s)	389, 833
Hpy8I	GTNNAC	4 cut(s)	257, 400, 485, 921
HpyAV	CCTTC	2 cut(s)	458, 748
HpyCH4III	ACNGT	3 cut(s)	144, 154, 695
HpyCH4IV	ACGT	1 cut(s)	857
HpyCH4V	TGCA	3 cut(s)	230, 377, 533
HpyF10VI	GCNNNNNNNGC	3 cut(s)	710, 785, 890
HpyF3I	CTNAG	3 cut(s)	248, 820, 900
HpySE526I	ACGT	1 cut(s)	857
Hsp92II	CATG	1 cut(s)	507
Kzo9I	GATC	4 cut(s)	309, 508, 871, 875
LmnI	GCTCC	2 cut(s)	344, 467
Lsp1109I	GCAGC	3 cut(s)	327, 393, 482
LweI	GCATC	2 cut(s)	386, 520
MaeI	CTAG	1 cut(s)	600
MaeII	ACGT	1 cut(s)	857
MaeIII	GTNAC	3 cut(s)	30, 144, 154
MalI	GATC	4 cut(s)	311, 510, 873, 877
MboI	GATC	4 cut(s)	309, 508, 871, 875
MboII	GAAGA	5 cut(s)	282, 503, 539, 661, 848
MfeI	CAATTG	2 cut(s)	231, 450
MluCI	AATT	4 cut(s)	73, 231, 450, 688
MlyI	GAGTC	3 cut(s)	27, 115, 162
MmeI	TCCRAC	4 cut(s)	117, 186, 470, 589
MseI	TTAA	3 cut(s)	14, 353, 931
MslI	CAYNNNNRTG	1 cut(s)	846
MspA1I	CMGCKG	1 cut(s)	592
MspI	CCGG	3 cut(s)	118, 186, 215
MspR9I	CCNGG	2 cut(s)	187, 573
MunI	CAATTG	2 cut(s)	231, 450
MvaI	CCWGG	1 cut(s)	573
MwoI	GCNNNNNNNGC	3 cut(s)	710, 785, 890
NciI	CCSGG	1 cut(s)	187
NdeII	GATC	4 cut(s)	309, 508, 871, 875
NlaIII	CATG	1 cut(s)	507
NlaIV	GGNNCC	1 cut(s)	759
NmuCI	GTSAC	3 cut(s)	30, 144, 154
PaqCI	CACCTGC	1 cut(s)	569
PfeI	GAWTC	3 cut(s)	134, 182, 287
PflMI	CCANNNNNTGG	1 cut(s)	99
PfoI	TCCNGGA	1 cut(s)	185
PkrI	GCNGC	4 cut(s)	317, 408, 472, 594
Ple19I	CGATCG	1 cut(s)	878
PleI	GAGTC	3 cut(s)	26, 115, 162
PpsI	GAGTC	3 cut(s)	26, 115, 162
Psp6I	CCWGG	1 cut(s)	571
PspGI	CCWGG	1 cut(s)	571
PspN4I	GGNNCC	1 cut(s)	759
PspPI	GGNCC	1 cut(s)	758
PvuI	CGATCG	1 cut(s)	878
RsaI	GTAC	1 cut(s)	435
RsaNI	GTAC	1 cut(s)	434
RseI	CAYNNNNRTG	1 cut(s)	846
SaqAI	TTAA	3 cut(s)	14, 353, 931
SatI	GCNGC	4 cut(s)	316, 407, 471, 593
Sau3AI	GATC	4 cut(s)	309, 508, 871, 875
Sau96I	GGNCC	1 cut(s)	758
SchI	GAGTC	3 cut(s)	27, 115, 162
ScrFI	CCNGG	2 cut(s)	187, 573
SfaNI	GCATC	2 cut(s)	386, 520
SinI	GGWCC	1 cut(s)	758
SmiMI	CAYNNNNRTG	1 cut(s)	846
Sse9I	AATT	4 cut(s)	73, 231, 450, 688
SsiI	CCGC	4 cut(s)	5, 9, 313, 592
SspMI	CTAG	1 cut(s)	600
StyD4I	CCNGG	2 cut(s)	185, 571
StyI	CCWWGG	1 cut(s)	327
TaaI	ACNGT	3 cut(s)	144, 154, 695
TaiI	ACGT	1 cut(s)	860
TaqI	TCGA	2 cut(s)	388, 874
TasI	AATT	4 cut(s)	73, 231, 450, 688
TauI	GCSGC	1 cut(s)	595
TfiI	GAWTC	3 cut(s)	134, 182, 287
Tru1I	TTAA	3 cut(s)	14, 353, 931
Tru9I	TTAA	3 cut(s)	14, 353, 931
TscAI	CASTG	4 cut(s)	39, 540, 646, 675
TseFI	GTSAC	3 cut(s)	30, 144, 154
TseI	GCWGC	3 cut(s)	315, 406, 470
Tsp45I	GTSAC	3 cut(s)	30, 144, 154
TspDTI	ATGAA	1 cut(s)	864
TspGWI	ACGGA	1 cut(s)	376
TspRI	CASTG	4 cut(s)	39, 540, 646, 675
Van91I	CCANNNNNTGG	1 cut(s)	99
VpaK11BI	GGWCC	1 cut(s)	758
XagI	CCTNNNNNAGG	1 cut(s)	576
XapI	RAATTY	1 cut(s)	73
XmiI	GTMKAC	1 cut(s)	920
XspI	CTAG	1 cut(s)	600

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.