Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0013516

Physical Location & Seq

Genomic Coordinates Reverse (-)

18084118 .. 18086991

Gene Structure 2874 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG212800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGGTGCTTTCAGAGTTCTAAGCAAGTCCCTCAGACATTACACACCCAAAGCCTCTATATTTCCAGAGAACTCAATCACTCCCGGACCCAACAAATGGCTTTGCCAAACTCGCCGGACTCTGATTCTGGAGTCAGCACCCTCTCAGTCCGTCAGCCTCCACAGGCTCTCCGACTCCGATTCCGGAATCGTTGAAGTTAGTTTGGAGAGACCACAAGTGAGAAATGCAATAGGGAAAGATATGCTGAAAGGTTTGCAGAACACGTTTGAAGCTATCAGTAAAGATTCATCTGCTAATGTTTTGTTGATCCGCAGTAAAGTTCCCAAGGCGTTCTGTGCAGGAGCAGATTTGAAGGAACGCAAGATGATGAGTGCAACTGAGGTTCAAGATTTCGTGAACAAGCTGCGTGCCACATTCTCATTTCTAGAGGTACTTCCCATTCCTACCATCGCTGTCATTGAAGGGGCAGCATTGGGTGGTGGACTTGAAATGGCTTTATCATGCGATCTTCGGATATGTGGAGAAGATGCAGTATTGGGATTGCCAGAAACTGGACTTGCTATAATTCCCGGGGCAGGTGGGACTCAACGACTTCCTAGAGTGGTTGGAAGATCAATAGCAAAGGAACTCATATTGACTGGGAGGAAGATTGGTGGCAGAGAAGCAATGTCAATGGGTATTCTTACTTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004300 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0016042 GO:0016054 GO:0016829 GO:0016835 GO:0016836 GO:0019395 GO:0019752 GO:0030258 GO:0032787 GO:0034440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0055114 GO:0071704 GO:0072329 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00280 ko01100 map00280 map01100

Pfam Domains

Protein Families

ECH_1

Protein Analysis

230

Amino Acids

24.73

Weight (kDa)

9.44

Isoelectric Point (pI)

49.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ECH_1	PF00378	60 - 228	2.1e-44	Enoyl-CoA hydratase/isomerase
ECH_2	PF16113	66 - 229	1.7e-31	Enoyl-CoA hydratase/isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16800
fragaria_vesca	FvH4_5g19890
malus_domestica	MD04G1057400.v1.1
prunus_persica	Prupe.5G061300_v2.0.a1 Prupe.5G061300_v2.0.a1
pyrus_communis	pycom04g05100
rosa_chinensis	RchiOBHm_Chr7g0204691
rosa_laevigata	RLG00000003437
rosa_multiflora	Rmu_sc0003221.1_g000066 Rmu_sc0007104.1_g000007
rosa_roxburghii	Rroxscaffold_3G00252860
rosa_rugosa	Rorug07G0085700 Rorug07G0085800
rosa_samantha	Rh7AG215600 Rh7BG212800 Rh7CG228700 Rh7DG223300
rosa_wichuraiana	Rw7G018690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	566
Acc36I	ACCTGC	1 cut(s)	566
AccB7I	CCANNNNNTGG	2 cut(s)	96, 551
AccIII	TCCGGA	1 cut(s)	182
AciI	CCGC	1 cut(s)	310
AclWI	GGATC	1 cut(s)	301
AfaI	GTAC	1 cut(s)	432
AfiI	CCNNNNNNNGG	3 cut(s)	96, 551, 575
AflIII	ACRYGT	1 cut(s)	261
AgsI	TTSAA	6 cut(s)	194, 269, 352, 386, 461, 488
AluBI	AGCT	2 cut(s)	272, 403
AluI	AGCT	2 cut(s)	272, 403
Alw26I	GTCTC	1 cut(s)	202
AlwI	GGATC	1 cut(s)	301
AlwNI	CAGNNNCTG	1 cut(s)	551
Ama87I	CYCGRG	1 cut(s)	569
Aor13HI	TCCGGA	1 cut(s)	182
ApeKI	GCWGC	2 cut(s)	403, 467
AspS9I	GGNCC	1 cut(s)	86
AsuC2I	CCSGG	3 cut(s)	84, 570, 571
AvaI	CYCGRG	1 cut(s)	569
AvaII	GGWCC	1 cut(s)	86
BbvI	GCAGC	2 cut(s)	390, 479
BccI	CCATC	1 cut(s)	455
BcnI	CCSGG	3 cut(s)	84, 570, 571
BcoDI	GTCTC	1 cut(s)	202
BfaI	CTAG	2 cut(s)	425, 597
BfuAI	ACCTGC	1 cut(s)	566
BisI	GCNGC	2 cut(s)	404, 468
BlsI	GCNGC	2 cut(s)	405, 469
Bme1390I	CCNGG	3 cut(s)	84, 570, 571
Bme18I	GGWCC	1 cut(s)	86
BmeT110I	CYCGRG	1 cut(s)	569
BmgT120I	GGNCC	1 cut(s)	86
BmiI	GGNNCC	1 cut(s)	88
BmrFI	CCNGG	3 cut(s)	84, 570, 571
BmrI	ACTGGG	1 cut(s)	648
BmsI	GCATC	1 cut(s)	517
BmuI	ACTGGG	1 cut(s)	648
BpmI	CTGGAG	1 cut(s)	149
BpuMI	CCSGG	3 cut(s)	84, 570, 571
BsaI	GGTCTC	1 cut(s)	202
BsaJI	CCNNGG	3 cut(s)	324, 569, 570
BsaWI	WCCGGW	1 cut(s)	182
BsaXI	ACNNNNNCTCC	2 cut(s)	152, 182
Bsc4I	CCNNNNNNNGG	3 cut(s)	96, 551, 575
Bse1I	ACTGG	2 cut(s)	556, 643
Bse3DI	GCAATG	1 cut(s)	672
BseAI	TCCGGA	1 cut(s)	182
BseDI	CCNNGG	3 cut(s)	324, 569, 570
BseLI	CCNNNNNNNGG	3 cut(s)	96, 551, 575
BseMI	GCAATG	1 cut(s)	672
BseMII	CTCAG	3 cut(s)	46, 158, 369
BseNI	ACTGG	2 cut(s)	556, 643
BseXI	GCAGC	2 cut(s)	390, 479
BsgI	GTGCAG	1 cut(s)	357
BsiHKCI	CYCGRG	1 cut(s)	569
BsiSI	CCGG	4 cut(s)	84, 115, 183, 570
BslFI	GGGAC	2 cut(s)	13, 595
BslI	CCNNNNNNNGG	3 cut(s)	96, 551, 575
BsmAI	GTCTC	1 cut(s)	202
BsmFI	GGGAC	2 cut(s)	13, 595
Bso31I	GGTCTC	1 cut(s)	202
BsoBI	CYCGRG	1 cut(s)	569
Bsp13I	TCCGGA	1 cut(s)	182
Bsp143I	GATC	3 cut(s)	306, 505, 611
BspACI	CCGC	1 cut(s)	310
BspCNI	CTCAG	3 cut(s)	45, 157, 370
BspEI	TCCGGA	1 cut(s)	182
BspLI	GGNNCC	1 cut(s)	88
BspMI	ACCTGC	1 cut(s)	566
BspPI	GGATC	1 cut(s)	301
BspTNI	GGTCTC	1 cut(s)	202
BsrDI	GCAATG	1 cut(s)	672
BsrI	ACTGG	2 cut(s)	556, 643
BssECI	CCNNGG	3 cut(s)	324, 569, 570
BssMI	GATC	3 cut(s)	306, 505, 611
BssT1I	CCWWGG	1 cut(s)	324
BstC8I	GCNNGC	1 cut(s)	408
BstDEI	CTNAG	4 cut(s)	20, 32, 144, 378
BstKTI	GATC	3 cut(s)	309, 508, 614
BstMAI	GTCTC	1 cut(s)	202
BstMBI	GATC	3 cut(s)	306, 505, 611
BstMWI	GCNNNNNNNGC	2 cut(s)	111, 335
BstSCI	CCNGG	3 cut(s)	82, 568, 569
BstV1I	GCAGC	2 cut(s)	390, 479
BtgZI	GCGATG	1 cut(s)	433
BveI	ACCTGC	1 cut(s)	566
Cac8I	GCNNGC	1 cut(s)	408
CaiI	CAGNNNCTG	1 cut(s)	551
Cfr13I	GGNCC	1 cut(s)	86
Cfr9I	CCCGGG	1 cut(s)	569
Csp6I	GTAC	1 cut(s)	431
CviAII	CATG	1 cut(s)	501
CviJI	RGCY	7 cut(s)	53, 100, 156, 166, 272, 403, 494
CviKI_1	RGCY	7 cut(s)	53, 100, 156, 166, 272, 403, 494
CviQI	GTAC	1 cut(s)	431
DdeI	CTNAG	4 cut(s)	20, 32, 144, 378
DpnI	GATC	3 cut(s)	308, 507, 613
DpnII	GATC	3 cut(s)	306, 505, 611
Eco130I	CCWWGG	1 cut(s)	324
Eco31I	GGTCTC	1 cut(s)	202
Eco47I	GGWCC	1 cut(s)	86
Eco88I	CYCGRG	1 cut(s)	569
EcoT14I	CCWWGG	1 cut(s)	324
ErhI	CCWWGG	1 cut(s)	324
FaeI	CATG	1 cut(s)	504
FaiI	YATR	6 cut(s)	59, 242, 502, 517, 563, 632
FaqI	GGGAC	2 cut(s)	13, 595
FatI	CATG	1 cut(s)	500
Fnu4HI	GCNGC	2 cut(s)	404, 468
Fsp4HI	GCNGC	2 cut(s)	404, 468
FspBI	CTAG	2 cut(s)	425, 597
GluI	GCNGC	2 cut(s)	404, 468
GsuI	CTGGAG	1 cut(s)	149
HapII	CCGG	4 cut(s)	84, 115, 183, 570
Hin1II	CATG	1 cut(s)	504
HinfI	GANTC	8 cut(s)	118, 124, 131, 173, 179, 186, 284, 583
HpaII	CCGG	4 cut(s)	84, 115, 183, 570
Hpy166II	GTNNAC	2 cut(s)	397, 482
Hpy188I	TCNGA	6 cut(s)	14, 35, 123, 172, 178, 513
Hpy188III	TCNNGA	6 cut(s)	65, 128, 183, 386, 394, 425
Hpy8I	GTNNAC	2 cut(s)	397, 482
HpyAV	CCTTC	2 cut(s)	346, 455
HpyCH4IV	ACGT	1 cut(s)	263
HpyCH4V	TGCA	5 cut(s)	227, 256, 338, 374, 530
HpyF10VI	GCNNNNNNNGC	2 cut(s)	111, 335
HpyF3I	CTNAG	4 cut(s)	20, 32, 144, 378
HpySE526I	ACGT	1 cut(s)	263
Hsp92II	CATG	1 cut(s)	504
Kpn2I	TCCGGA	1 cut(s)	182
Kzo9I	GATC	3 cut(s)	306, 505, 611
LmnI	GCTCC	1 cut(s)	341
Lsp1109I	GCAGC	2 cut(s)	390, 479
LweI	GCATC	1 cut(s)	517
MaeI	CTAG	2 cut(s)	425, 597
MaeII	ACGT	1 cut(s)	263
MalI	GATC	3 cut(s)	308, 507, 613
MboI	GATC	3 cut(s)	306, 505, 611
MboII	GAAGA	4 cut(s)	500, 536, 621, 658
MluCI	AATT	1 cut(s)	564
MlyI	GAGTC	4 cut(s)	112, 140, 167, 577
MmeI	TCCRAC	2 cut(s)	195, 586
MnlI	CCTC	7 cut(s)	41, 64, 151, 167, 373, 421, 636
MroI	TCCGGA	1 cut(s)	182
MspI	CCGG	4 cut(s)	84, 115, 183, 570
MspR9I	CCNGG	3 cut(s)	84, 570, 571
MwoI	GCNNNNNNNGC	2 cut(s)	111, 335
NciI	CCSGG	3 cut(s)	84, 570, 571
NdeII	GATC	3 cut(s)	306, 505, 611
NlaIII	CATG	1 cut(s)	504
NlaIV	GGNNCC	1 cut(s)	88
PaqCI	CACCTGC	1 cut(s)	566
PfeI	GAWTC	4 cut(s)	124, 179, 186, 284
PflMI	CCANNNNNTGG	2 cut(s)	96, 551
PfoI	TCCNGGA	1 cut(s)	82
PkrI	GCNGC	2 cut(s)	405, 469
PleI	GAGTC	4 cut(s)	112, 139, 167, 577
PpsI	GAGTC	4 cut(s)	112, 139, 167, 577
PspN4I	GGNNCC	1 cut(s)	88
PspPI	GGNCC	1 cut(s)	86
PstNI	CAGNNNCTG	1 cut(s)	551
RsaI	GTAC	1 cut(s)	432
RsaNI	GTAC	1 cut(s)	431
SatI	GCNGC	2 cut(s)	404, 468
Sau3AI	GATC	3 cut(s)	306, 505, 611
Sau96I	GGNCC	1 cut(s)	86
SchI	GAGTC	4 cut(s)	112, 140, 167, 577
ScrFI	CCNGG	3 cut(s)	84, 570, 571
SetI	ASST	7 cut(s)	253, 266, 274, 384, 405, 432, 580
SfaNI	GCATC	1 cut(s)	517
SinI	GGWCC	1 cut(s)	86
SmaI	CCCGGG	1 cut(s)	571
Sse9I	AATT	1 cut(s)	564
SsiI	CCGC	1 cut(s)	310
SspMI	CTAG	2 cut(s)	425, 597
StyD4I	CCNGG	3 cut(s)	82, 568, 569
StyI	CCWWGG	1 cut(s)	324
TaiI	ACGT	1 cut(s)	266
TasI	AATT	1 cut(s)	564
TfiI	GAWTC	4 cut(s)	124, 179, 186, 284
TseI	GCWGC	2 cut(s)	403, 467
TspDTI	ATGAA	1 cut(s)	276
TspGWI	ACGGA	1 cut(s)	139
TspMI	CCCGGG	1 cut(s)	569
Van91I	CCANNNNNTGG	2 cut(s)	96, 551
VpaK11BI	GGWCC	1 cut(s)	86
XbaI	TCTAGA	1 cut(s)	424
XmaI	CCCGGG	1 cut(s)	569
XspI	CTAG	2 cut(s)	425, 597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.