Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0013516

Physical Location & Seq

Genomic Coordinates Reverse (-)

11700663 .. 11703705

Gene Structure 3043 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g19890.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGTGGGTGCTTTCAGAGTTCTAAGCAAGTCCCTCAGACACTACAAACCCAAAGCCTCAATATTTCCAGACAGTCCACTCACTCCCACACCCAACCAATGGCTTCACCAAACTCGCCGCACTCTGATTCTGGAGTCAGCACCCTCTCACTCCGTCAACCTCCACAGGCTCTCCGATTCCGATTCCGGAATCGTTGAAGTTAGTTTGGAGAGACCCCAAGTGAGAAATGCAATAGGGAAAGACATGCTCAAAGGTTTGCAGAACACGCTTGAAGCTATCAGGAAGGATTCATCTGTTAAAGTTTTGTTGCTCTGCAGTAAAGTTCCCAAGGTGTTTTGTGCTGGAGCAGATTTGAAGGAGCGCAAGATGATGACTGCAACTGAGGTTCGTGATTTCGTGAACAAGCTGCGTGCCACATTCTCATTTCTAGAGGTACTTCCCATTCCTACCATCGCCGTCATTGAAGGGGCAGCATTAGGTGGTGGACTTGAAATGGCTTTATCATGTGATCTTCGGATATGTGGAGAAGATGCAGTATTGGGATTGCCAGAAACTGGACTTGCTATAATTCCCGGGGCAGGTGGGACTCAGCGACTTCCTAGACTGGTTGGAAGATCAATAGCAAAGGAACTCATATTAACTGGGAGGAAGATTGATGGCAGAGAAGCAATGTCAATGGGTCTGGTAAATTATTGCGTCCATGCTGGTGAAGCTCATCTAAAGGCACTTGAAGTTGCTCGCAATATAAATGACAAGGGTCCAATAGCAATAAGGATGGCGAAAAGAGCTATTGACCAGGGACTTGAGGTAGATAGGGCATCAGCTCTGGCACTGGAAGAAGAATGCTATGAGAAAACCTTGCACACAAAAGATCGCTTGGAAGCCCTGGCAGCATTTGCTGAGAAACGGAAGCCGCGGTATTCTGGAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004300 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0016042 GO:0016054 GO:0016829 GO:0016835 GO:0016836 GO:0019395 GO:0019752 GO:0030258 GO:0032787 GO:0034440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0055114 GO:0071704 GO:0072329 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00280 ko01100 map00280 map01100

Pfam Domains

Protein Families

ECH_1

Protein Analysis

311

Amino Acids

33.85

Weight (kDa)

9.19

Isoelectric Point (pI)

36.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ECH_1	PF00378	61 - 309	3.3e-62	Enoyl-CoA hydratase/isomerase
ECH_2	PF16113	67 - 237	1.3e-32	Enoyl-CoA hydratase/isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16800
fragaria_vesca	FvH4_5g19890
malus_domestica	MD04G1057400.v1.1
prunus_persica	Prupe.5G061300_v2.0.a1 Prupe.5G061300_v2.0.a1
pyrus_communis	pycom04g05100
rosa_chinensis	RchiOBHm_Chr7g0204691
rosa_laevigata	RLG00000003437
rosa_multiflora	Rmu_sc0003221.1_g000066 Rmu_sc0007104.1_g000007
rosa_roxburghii	Rroxscaffold_3G00252860
rosa_rugosa	Rorug07G0085700 Rorug07G0085800
rosa_samantha	Rh7AG215600 Rh7BG212800 Rh7CG228700 Rh7DG223300
rosa_wichuraiana	Rw7G018690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	569
Acc36I	ACCTGC	1 cut(s)	569
AccB7I	CCANNNNNTGG	2 cut(s)	99, 554
AccII	CGCG	1 cut(s)	916
AccIII	TCCGGA	1 cut(s)	185
AciI	CCGC	3 cut(s)	118, 914, 916
AfaI	GTAC	1 cut(s)	435
AfiI	CCNNNNNNNGG	3 cut(s)	99, 554, 578
AgsI	TTSAA	6 cut(s)	197, 272, 355, 464, 491, 731
AjnI	CCWGG	2 cut(s)	795, 885
AluBI	AGCT	5 cut(s)	275, 406, 713, 788, 824
AluI	AGCT	5 cut(s)	275, 406, 713, 788, 824
Alw26I	GTCTC	1 cut(s)	205
AlwNI	CAGNNNCTG	1 cut(s)	554
Ama87I	CYCGRG	1 cut(s)	572
Aor13HI	TCCGGA	1 cut(s)	185
ApeKI	GCWGC	3 cut(s)	406, 470, 890
AspLEI	GCGC	1 cut(s)	363
AspS9I	GGNCC	1 cut(s)	758
AsuC2I	CCSGG	2 cut(s)	573, 574
AsuHPI	GGTGA	2 cut(s)	98, 719
AvaI	CYCGRG	1 cut(s)	572
AvaII	GGWCC	1 cut(s)	758
BbvI	GCAGC	3 cut(s)	393, 482, 902
BccI	CCATC	3 cut(s)	458, 650, 769
BceAI	ACGGC	1 cut(s)	440
BciT130I	CCWGG	2 cut(s)	797, 887
BcnI	CCSGG	2 cut(s)	573, 574
BcoDI	GTCTC	1 cut(s)	205
BfaI	CTAG	2 cut(s)	428, 600
BfmI	CTRYAG	1 cut(s)	313
BfuAI	ACCTGC	1 cut(s)	569
BisI	GCNGC	5 cut(s)	118, 407, 471, 891, 914
BlsI	GCNGC	5 cut(s)	119, 408, 472, 892, 915
Bme1390I	CCNGG	4 cut(s)	573, 574, 797, 887
Bme18I	GGWCC	1 cut(s)	758
BmeT110I	CYCGRG	1 cut(s)	572
BmgT120I	GGNCC	1 cut(s)	758
BmiI	GGNNCC	1 cut(s)	759
BmrFI	CCNGG	4 cut(s)	573, 574, 797, 887
BmrI	ACTGGG	1 cut(s)	651
BmsI	GCATC	2 cut(s)	520, 827
BmuI	ACTGGG	1 cut(s)	651
BoxI	GACNNNNGTC	1 cut(s)	756
BpmI	CTGGAG	2 cut(s)	152, 363
BpuEI	CTTGAG	1 cut(s)	824
BpuMI	CCSGG	2 cut(s)	573, 574
BsaI	GGTCTC	1 cut(s)	205
BsaJI	CCNNGG	6 cut(s)	327, 572, 573, 796, 885, 914
BsaWI	WCCGGW	1 cut(s)	185
BsaXI	ACNNNNNCTCC	2 cut(s)	155, 185
Bsc4I	CCNNNNNNNGG	3 cut(s)	99, 554, 578
Bse1I	ACTGG	4 cut(s)	559, 609, 646, 837
Bse3DI	GCAATG	1 cut(s)	675
BseAI	TCCGGA	1 cut(s)	185
BseBI	CCWGG	2 cut(s)	797, 887
BseDI	CCNNGG	6 cut(s)	327, 572, 573, 796, 885, 914
BseGI	GGATG	1 cut(s)	780
BseLI	CCNNNNNNNGG	3 cut(s)	99, 554, 578
BseMI	GCAATG	1 cut(s)	675
BseMII	CTCAG	4 cut(s)	49, 372, 602, 891
BseNI	ACTGG	4 cut(s)	559, 609, 646, 837
BseXI	GCAGC	3 cut(s)	393, 482, 902
Bsh1236I	CGCG	1 cut(s)	916
BsiHKCI	CYCGRG	1 cut(s)	572
BsiSI	CCGG	2 cut(s)	186, 573
BslFI	GGGAC	3 cut(s)	16, 598, 813
BslI	CCNNNNNNNGG	3 cut(s)	99, 554, 578
BsmAI	GTCTC	1 cut(s)	205
BsmFI	GGGAC	3 cut(s)	16, 598, 813
BsmI	GAATGC	1 cut(s)	848
Bso31I	GGTCTC	1 cut(s)	205
BsoBI	CYCGRG	1 cut(s)	572
Bsp13I	TCCGGA	1 cut(s)	185
Bsp143I	GATC	3 cut(s)	508, 614, 871
BspACI	CCGC	3 cut(s)	118, 914, 916
BspCNI	CTCAG	4 cut(s)	48, 373, 601, 892
BspEI	TCCGGA	1 cut(s)	185
BspFNI	CGCG	1 cut(s)	916
BspLI	GGNNCC	1 cut(s)	759
BspMAI	CTGCAG	1 cut(s)	317
BspMI	ACCTGC	1 cut(s)	569
BspTNI	GGTCTC	1 cut(s)	205
BsrDI	GCAATG	1 cut(s)	675
BsrI	ACTGG	4 cut(s)	559, 609, 646, 837
BssECI	CCNNGG	6 cut(s)	327, 572, 573, 796, 885, 914
BssMI	GATC	3 cut(s)	508, 614, 871
BssT1I	CCWWGG	1 cut(s)	327
Bst2UI	CCWGG	2 cut(s)	797, 887
Bst4CI	ACNGT	1 cut(s)	74
BstAPI	GCANNNNNTGC	1 cut(s)	896
BstC8I	GCNNGC	2 cut(s)	411, 739
BstDEI	CTNAG	5 cut(s)	23, 35, 381, 588, 900
BstDSI	CCRYGG	1 cut(s)	914
BstF5I	GGATG	1 cut(s)	780
BstFNI	CGCG	1 cut(s)	916
BstHHI	GCGC	1 cut(s)	363
BstKTI	GATC	3 cut(s)	511, 617, 874
BstMAI	GTCTC	1 cut(s)	205
BstMBI	GATC	3 cut(s)	508, 614, 871
BstMWI	GCNNNNNNNGC	5 cut(s)	265, 710, 785, 890, 896
BstNI	CCWGG	2 cut(s)	797, 887
BstNSI	RCATGY	1 cut(s)	247
BstPAI	GACNNNNGTC	1 cut(s)	756
BstSCI	CCNGG	4 cut(s)	571, 572, 795, 885
BstSFI	CTRYAG	1 cut(s)	313
BstUI	CGCG	1 cut(s)	916
BstV1I	GCAGC	3 cut(s)	393, 482, 902
BtgI	CCRYGG	1 cut(s)	914
BtgZI	GCGATG	1 cut(s)	436
BtsCI	GGATG	1 cut(s)	780
BtsIMutI	CAGTG	1 cut(s)	830
BveI	ACCTGC	1 cut(s)	569
Cac8I	GCNNGC	2 cut(s)	411, 739
CaiI	CAGNNNCTG	1 cut(s)	554
CfoI	GCGC	1 cut(s)	363
Cfr13I	GGNCC	1 cut(s)	758
Cfr42I	CCGCGG	1 cut(s)	917
Cfr9I	CCCGGG	1 cut(s)	572
CseI	GACGC	1 cut(s)	685
Csp6I	GTAC	1 cut(s)	434
CviAII	CATG	3 cut(s)	244, 504, 701
CviQI	GTAC	1 cut(s)	434
DdeI	CTNAG	5 cut(s)	23, 35, 381, 588, 900
DpnI	GATC	3 cut(s)	510, 616, 873
DpnII	GATC	3 cut(s)	508, 614, 871
Eco130I	CCWWGG	1 cut(s)	327
Eco31I	GGTCTC	1 cut(s)	205
Eco47I	GGWCC	1 cut(s)	758
Eco88I	CYCGRG	1 cut(s)	572
EcoRII	CCWGG	2 cut(s)	795, 885
EcoT14I	CCWWGG	1 cut(s)	327
ErhI	CCWWGG	1 cut(s)	327
FaeI	CATG	3 cut(s)	247, 507, 704
FaiI	YATR	8 cut(s)	245, 505, 520, 566, 635, 702, 746, 849
FaqI	GGGAC	3 cut(s)	16, 598, 813
FatI	CATG	3 cut(s)	243, 503, 700
Fnu4HI	GCNGC	5 cut(s)	118, 407, 471, 891, 914
FokI	GGATG	1 cut(s)	787
Fsp4HI	GCNGC	5 cut(s)	118, 407, 471, 891, 914
FspBI	CTAG	2 cut(s)	428, 600
GlaI	GCGC	1 cut(s)	362
GluI	GCNGC	5 cut(s)	118, 407, 471, 891, 914
GsuI	CTGGAG	2 cut(s)	152, 363
HapII	CCGG	2 cut(s)	186, 573
HgaI	GACGC	1 cut(s)	685
HhaI	GCGC	1 cut(s)	363
Hin1II	CATG	3 cut(s)	247, 507, 704
Hin6I	GCGC	1 cut(s)	361
HinP1I	GCGC	1 cut(s)	361
HincII	GTYRAC	1 cut(s)	157
HindII	GTYRAC	1 cut(s)	157
HinfI	GANTC	7 cut(s)	127, 134, 176, 182, 189, 287, 586
HpaII	CCGG	2 cut(s)	186, 573
HphI	GGTGA	2 cut(s)	98, 719
Hpy166II	GTNNAC	4 cut(s)	77, 157, 400, 485
Hpy188I	TCNGA	6 cut(s)	17, 38, 126, 175, 181, 516
Hpy188III	TCNNGA	8 cut(s)	68, 131, 186, 280, 389, 397, 428, 924
Hpy8I	GTNNAC	4 cut(s)	77, 157, 400, 485
HpyAV	CCTTC	3 cut(s)	277, 349, 458
HpyCH4III	ACNGT	1 cut(s)	74
HpyCH4V	TGCA	6 cut(s)	230, 259, 315, 377, 533, 862
HpyF10VI	GCNNNNNNNGC	5 cut(s)	265, 710, 785, 890, 896
HpyF3I	CTNAG	5 cut(s)	23, 35, 381, 588, 900
Hsp92II	CATG	3 cut(s)	247, 507, 704
HspAI	GCGC	1 cut(s)	361
Kpn2I	TCCGGA	1 cut(s)	185
KspI	CCGCGG	1 cut(s)	917
Kzo9I	GATC	3 cut(s)	508, 614, 871
LmnI	GCTCC	2 cut(s)	344, 358
Lsp1109I	GCAGC	3 cut(s)	393, 482, 902
LweI	GCATC	2 cut(s)	520, 827
MaeI	CTAG	2 cut(s)	428, 600
MalI	GATC	3 cut(s)	510, 616, 873
MboI	GATC	3 cut(s)	508, 614, 871
MboII	GAAGA	6 cut(s)	503, 539, 624, 661, 848, 851
MluCI	AATT	2 cut(s)	567, 688
MlyI	GAGTC	2 cut(s)	143, 580
MmeI	TCCRAC	1 cut(s)	589
MnlI	CCTC	8 cut(s)	44, 67, 154, 170, 376, 424, 639, 799
MroI	TCCGGA	1 cut(s)	185
MseI	TTAA	2 cut(s)	297, 638
MslI	CAYNNNNRTG	1 cut(s)	705
MspA1I	CMGCKG	1 cut(s)	916
MspI	CCGG	2 cut(s)	186, 573
MspR9I	CCNGG	4 cut(s)	573, 574, 797, 887
Mva1269I	GAATGC	1 cut(s)	848
MvaI	CCWGG	2 cut(s)	797, 887
MvnI	CGCG	1 cut(s)	916
MwoI	GCNNNNNNNGC	5 cut(s)	265, 710, 785, 890, 896
NciI	CCSGG	2 cut(s)	573, 574
NdeII	GATC	3 cut(s)	508, 614, 871
NlaIII	CATG	3 cut(s)	247, 507, 704
NlaIV	GGNNCC	1 cut(s)	759
NspI	RCATGY	1 cut(s)	247
PaqCI	CACCTGC	1 cut(s)	569
PctI	GAATGC	1 cut(s)	848
PfeI	GAWTC	5 cut(s)	127, 176, 182, 189, 287
PflMI	CCANNNNNTGG	2 cut(s)	99, 554
PkrI	GCNGC	5 cut(s)	119, 408, 472, 892, 915
PleI	GAGTC	2 cut(s)	142, 580
PpsI	GAGTC	2 cut(s)	142, 580
PshAI	GACNNNNGTC	1 cut(s)	756
Psp6I	CCWGG	2 cut(s)	795, 885
PspGI	CCWGG	2 cut(s)	795, 885
PspN4I	GGNNCC	1 cut(s)	759
PspPI	GGNCC	1 cut(s)	758
PstI	CTGCAG	1 cut(s)	317
PstNI	CAGNNNCTG	1 cut(s)	554
RsaI	GTAC	1 cut(s)	435
RsaNI	GTAC	1 cut(s)	434
RseI	CAYNNNNRTG	1 cut(s)	705
SacII	CCGCGG	1 cut(s)	917
SaqAI	TTAA	2 cut(s)	297, 638
SatI	GCNGC	5 cut(s)	118, 407, 471, 891, 914
Sau3AI	GATC	3 cut(s)	508, 614, 871
Sau96I	GGNCC	1 cut(s)	758
SchI	GAGTC	2 cut(s)	143, 580
ScrFI	CCNGG	4 cut(s)	573, 574, 797, 887
SfaNI	GCATC	2 cut(s)	520, 827
SfcI	CTRYAG	1 cut(s)	313
Sfr303I	CCGCGG	1 cut(s)	917
SgrBI	CCGCGG	1 cut(s)	917
SinI	GGWCC	1 cut(s)	758
SmaI	CCCGGG	1 cut(s)	574
SmiMI	CAYNNNNRTG	1 cut(s)	705
SmlI	CTYRAG	1 cut(s)	803
SmoI	CTYRAG	1 cut(s)	803
Sse9I	AATT	2 cut(s)	567, 688
SsiI	CCGC	3 cut(s)	118, 914, 916
SspI	AATATT	1 cut(s)	63
SspMI	CTAG	2 cut(s)	428, 600
StyD4I	CCNGG	4 cut(s)	571, 572, 795, 885
StyI	CCWWGG	1 cut(s)	327
TaaI	ACNGT	1 cut(s)	74
TasI	AATT	2 cut(s)	567, 688
TauI	GCSGC	2 cut(s)	120, 916
TfiI	GAWTC	5 cut(s)	127, 176, 182, 189, 287
Tru1I	TTAA	2 cut(s)	297, 638
Tru9I	TTAA	2 cut(s)	297, 638
TscAI	CASTG	1 cut(s)	837
TseI	GCWGC	3 cut(s)	406, 470, 890
TspDTI	ATGAA	1 cut(s)	279
TspGWI	ACGGA	2 cut(s)	142, 922
TspMI	CCCGGG	1 cut(s)	572
TspRI	CASTG	1 cut(s)	837
Van91I	CCANNNNNTGG	2 cut(s)	99, 554
VpaK11BI	GGWCC	1 cut(s)	758
XbaI	TCTAGA	1 cut(s)	427
XceI	RCATGY	1 cut(s)	247
XmaI	CCCGGG	1 cut(s)	572
XspI	CTAG	2 cut(s)	428, 600

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.