AT4G16840

endonuclease activity

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
9474885 .. 9475699
815 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G16840.1

Sequence Viewer

Length: 264 bp
ATGCGTAGATCAGCGAGTGGTTCTAGAGTTTTGGATCATTTTCCGGCGACTTCAAGGTCTCCGCCTCGATCTCAGAGTGTTACAGCAATGGAAGATGATGTGGAGCTGCTTTTGCCTAGGTACGATCCGAATTCTCAAGCGGGGAAGAGAGAGAAATCAAGATTCAGATTTTCAGAAAACGTCATCCATTTGATTCCTCTCATTCTTCTTCTCTGTGTCGCAATCCTCTGGCTCTCCTCTTACTCAGCAGCGTTAAGGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

87

Amino Acids

9.81

Weight (kDa)

10.0

Isoelectric Point (pI)

84.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010832)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 55
AciI CCGC 2 cut(s) 62, 140
AclWI GGATC 2 cut(s) 42, 119
AcsI RAATTY 1 cut(s) 130
AfaI GTAC 1 cut(s) 122
AgsI TTSAA 1 cut(s) 54
AluBI AGCT 1 cut(s) 106
AluI AGCT 1 cut(s) 106
Alw26I GTCTC 1 cut(s) 63
AlwI GGATC 2 cut(s) 42, 119
ApeKI GCWGC 2 cut(s) 106, 248
ApoI RAATTY 1 cut(s) 130
AspA2I CCTAGG 1 cut(s) 116
AvrII CCTAGG 1 cut(s) 116
BbvI GCAGC 2 cut(s) 93, 260
BcoDI GTCTC 1 cut(s) 63
BfaI CTAG 2 cut(s) 24, 117
BisI GCNGC 2 cut(s) 107, 249
BlnI CCTAGG 1 cut(s) 116
BlsI GCNGC 2 cut(s) 108, 250
BpuEI CTTGAG 1 cut(s) 120
BsaI GGTCTC 1 cut(s) 63
BsaJI CCNNGG 1 cut(s) 116
Bse3DI GCAATG 1 cut(s) 93
BseDI CCNNGG 1 cut(s) 116
BseGI GGATG 1 cut(s) 183
BseMI GCAATG 1 cut(s) 93
BseMII CTCAG 2 cut(s) 86, 258
BseRI GAGGAG 1 cut(s) 226
BseXI GCAGC 2 cut(s) 93, 260
BsiSI CCGG 1 cut(s) 44
BsmAI GTCTC 1 cut(s) 63
Bso31I GGTCTC 1 cut(s) 63
Bsp143I GATC 4 cut(s) 8, 34, 68, 124
BspACI CCGC 2 cut(s) 62, 140
BspCNI CTCAG 2 cut(s) 85, 257
BspPI GGATC 2 cut(s) 42, 119
BspTNI GGTCTC 1 cut(s) 63
BsrDI GCAATG 1 cut(s) 93
BssECI CCNNGG 1 cut(s) 116
BssMI GATC 4 cut(s) 8, 34, 68, 124
BssT1I CCWWGG 1 cut(s) 116
Bst6I CTCTTC 1 cut(s) 140
BstDEI CTNAG 2 cut(s) 72, 244
BstF5I GGATG 1 cut(s) 183
BstKTI GATC 4 cut(s) 11, 37, 71, 127
BstMAI GTCTC 1 cut(s) 63
BstMBI GATC 4 cut(s) 8, 34, 68, 124
BstMWI GCNNNNNNNGC 1 cut(s) 112
BstV1I GCAGC 2 cut(s) 93, 260
BtsCI GGATG 1 cut(s) 183
Csp6I GTAC 1 cut(s) 121
CviJI RGCY 2 cut(s) 106, 232
CviKI_1 RGCY 2 cut(s) 106, 232
CviQI GTAC 1 cut(s) 121
DdeI CTNAG 2 cut(s) 72, 244
DpnI GATC 4 cut(s) 10, 36, 70, 126
DpnII GATC 4 cut(s) 8, 34, 68, 124
DrdI GACNNNNNNGTC 1 cut(s) 55
DseDI GACNNNNNNGTC 1 cut(s) 55
Eam1104I CTCTTC 1 cut(s) 140
EarI CTCTTC 1 cut(s) 140
EciI GGCGGA 1 cut(s) 51
Eco130I CCWWGG 1 cut(s) 116
Eco31I GGTCTC 1 cut(s) 63
EcoRI GAATTC 1 cut(s) 130
EcoT14I CCWWGG 1 cut(s) 116
ErhI CCWWGG 1 cut(s) 116
FauI CCCGC 1 cut(s) 133
Fnu4HI GCNGC 2 cut(s) 107, 249
FokI GGATG 1 cut(s) 170
Fsp4HI GCNGC 2 cut(s) 107, 249
FspBI CTAG 2 cut(s) 24, 117
GluI GCNGC 2 cut(s) 107, 249
HapII CCGG 1 cut(s) 44
HinfI GANTC 2 cut(s) 162, 193
HpaII CCGG 1 cut(s) 44
Hpy188I TCNGA 4 cut(s) 75, 129, 167, 175
Hpy188III TCNNGA 2 cut(s) 24, 159
HpyCH4IV ACGT 1 cut(s) 180
HpyF10VI GCNNNNNNNGC 1 cut(s) 112
HpyF3I CTNAG 2 cut(s) 72, 244
HpySE526I ACGT 1 cut(s) 180
Kzo9I GATC 4 cut(s) 8, 34, 68, 124
LmnI GCTCC 1 cut(s) 103
LpnPI CCDG 2 cut(s) 57, 214
Lsp1109I GCAGC 2 cut(s) 93, 260
MaeI CTAG 2 cut(s) 24, 117
MaeII ACGT 1 cut(s) 180
MaeIII GTNAC 1 cut(s) 79
MalI GATC 4 cut(s) 10, 36, 70, 126
MboI GATC 4 cut(s) 8, 34, 68, 124
MboII GAAGA 4 cut(s) 104, 157, 197, 200
MluCI AATT 1 cut(s) 130
MnlI CCTC 4 cut(s) 75, 207, 236, 247
MseI TTAA 1 cut(s) 254
MspI CCGG 1 cut(s) 44
MwoI GCNNNNNNNGC 1 cut(s) 112
NdeII GATC 4 cut(s) 8, 34, 68, 124
PfeI GAWTC 2 cut(s) 162, 193
PkrI GCNGC 2 cut(s) 108, 250
RsaI GTAC 1 cut(s) 122
RsaNI GTAC 1 cut(s) 121
SaqAI TTAA 1 cut(s) 254
SatI GCNGC 2 cut(s) 107, 249
Sau3AI GATC 4 cut(s) 8, 34, 68, 124
SetI ASST 4 cut(s) 59, 108, 122, 183
SmlI CTYRAG 1 cut(s) 135
SmoI CTYRAG 1 cut(s) 135
Sse9I AATT 1 cut(s) 130
SsiI CCGC 2 cut(s) 62, 140
SspMI CTAG 2 cut(s) 24, 117
StyI CCWWGG 1 cut(s) 116
TaiI ACGT 1 cut(s) 183
TaqI TCGA 1 cut(s) 67
TasI AATT 1 cut(s) 130
TfiI GAWTC 2 cut(s) 162, 193
Tru1I TTAA 1 cut(s) 254
Tru9I TTAA 1 cut(s) 254
TseI GCWGC 2 cut(s) 106, 248
XapI RAATTY 1 cut(s) 130
XbaI TCTAGA 1 cut(s) 23
XmaJI CCTAGG 1 cut(s) 116
XspI CTAG 2 cut(s) 24, 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.