pycom04g04440

endonuclease activity

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Forward (+)
4000330 .. 4000644
315 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g04440.1

Sequence Viewer

Length: 315 bp
ATGCAGAGATCCAAAAGTGCTTCCAGAGTCTCCCCAGAGGACTTGCTTCTGGCCTCCTCCCCCCAATCTTCAACCTTCAAACCAACCACAAACGACGACTCAGATCACCACCAGCACGAGCATCTGCATCTCCCCACCTACGATCCCCGCTCTCATGTGGCAAAGAGAGAACGGCGTCGTGTCAGGTCCGCAGAGAACGCCATCCACTTGATACCTGTCCTGCTAGTCCTCTGCGCCATCATCCTCTGGTTCTTTTCCAATCGAGGTACAATATACAATCTGCCCACTTTGCCACTTGGCCCCATATATTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.95

Weight (kDa)

9.42

Isoelectric Point (pI)

69.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0010832)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 309
AccBSI CCGCTC 1 cut(s) 150
AciI CCGC 2 cut(s) 148, 189
AclWI GGATC 2 cut(s) 3, 137
AcyI GRCGYC 1 cut(s) 175
AfaI GTAC 1 cut(s) 268
AfiI CCNNNNNNNGG 1 cut(s) 309
AgsI TTSAA 2 cut(s) 72, 79
Alw26I GTCTC 1 cut(s) 34
AlwI GGATC 2 cut(s) 3, 137
AoxI GGCC 2 cut(s) 51, 298
AspLEI GCGC 1 cut(s) 236
AspS9I GGNCC 2 cut(s) 186, 299
AsuHPI GGTGA 1 cut(s) 98
AvaII GGWCC 1 cut(s) 186
BauI CACGAG 1 cut(s) 116
BccI CCATC 2 cut(s) 209, 245
BceAI ACGGC 1 cut(s) 188
BcoDI GTCTC 1 cut(s) 34
BfaI CTAG 1 cut(s) 224
Bme18I GGWCC 1 cut(s) 186
BmgT120I GGNCC 2 cut(s) 186, 299
BmiI GGNNCC 1 cut(s) 301
BmsI GCATC 2 cut(s) 130, 136
BsaHI GRCGYC 1 cut(s) 175
Bsc4I CCNNNNNNNGG 1 cut(s) 309
BseGI GGATG 2 cut(s) 201, 240
BseLI CCNNNNNNNGG 1 cut(s) 309
BseMII CTCAG 1 cut(s) 114
BseRI GAGGAG 1 cut(s) 46
BshFI GGCC 2 cut(s) 53, 300
BslI CCNNNNNNNGG 1 cut(s) 309
BsmAI GTCTC 1 cut(s) 34
BsnI GGCC 2 cut(s) 53, 300
Bsp143I GATC 3 cut(s) 8, 103, 142
BspACI CCGC 2 cut(s) 148, 189
BspANI GGCC 2 cut(s) 53, 300
BspCNI CTCAG 1 cut(s) 113
BspLI GGNNCC 1 cut(s) 301
BspPI GGATC 2 cut(s) 3, 137
BsrBI CCGCTC 1 cut(s) 150
BssMI GATC 3 cut(s) 8, 103, 142
BssNI GRCGYC 1 cut(s) 175
BssSI CACGAG 1 cut(s) 116
Bst2BI CACGAG 1 cut(s) 116
BstACI GRCGYC 1 cut(s) 175
BstDEI CTNAG 1 cut(s) 100
BstF5I GGATG 2 cut(s) 201, 240
BstHHI GCGC 1 cut(s) 236
BstKTI GATC 3 cut(s) 11, 106, 145
BstMAI GTCTC 1 cut(s) 34
BstMBI GATC 3 cut(s) 8, 103, 142
BstMWI GCNNNNNNNGC 2 cut(s) 197, 289
BstX2I RGATCY 1 cut(s) 8
BstYI RGATCY 1 cut(s) 8
BsuRI GGCC 2 cut(s) 53, 300
BtsCI GGATG 2 cut(s) 201, 240
CfoI GCGC 1 cut(s) 236
Cfr13I GGNCC 2 cut(s) 186, 299
CseI GACGC 1 cut(s) 164
Csp6I GTAC 1 cut(s) 267
CviAII CATG 1 cut(s) 155
CviJI RGCY 2 cut(s) 53, 300
CviKI_1 RGCY 2 cut(s) 53, 300
CviQI GTAC 1 cut(s) 267
DdeI CTNAG 1 cut(s) 100
DpnI GATC 3 cut(s) 10, 105, 144
DpnII GATC 3 cut(s) 8, 103, 142
Eco47I GGWCC 1 cut(s) 186
FaeI CATG 1 cut(s) 158
FaiI YATR 4 cut(s) 156, 274, 305, 307
FatI CATG 1 cut(s) 154
FauI CCCGC 1 cut(s) 155
FokI GGATG 2 cut(s) 188, 227
FspBI CTAG 1 cut(s) 224
GlaI GCGC 1 cut(s) 235
HaeIII GGCC 2 cut(s) 53, 300
HgaI GACGC 1 cut(s) 164
HhaI GCGC 1 cut(s) 236
Hin1I GRCGYC 1 cut(s) 175
Hin1II CATG 1 cut(s) 158
Hin6I GCGC 1 cut(s) 234
HinP1I GCGC 1 cut(s) 234
HinfI GANTC 2 cut(s) 27, 98
HphI GGTGA 1 cut(s) 98
Hpy188I TCNGA 1 cut(s) 103
Hpy188III TCNNGA 1 cut(s) 24
Hpy99I CGWCG 2 cut(s) 98, 180
HpyAV CCTTC 1 cut(s) 85
HpyCH4V TGCA 2 cut(s) 4, 127
HpyF10VI GCNNNNNNNGC 2 cut(s) 197, 289
HpyF3I CTNAG 1 cut(s) 100
Hsp92I GRCGYC 1 cut(s) 175
Hsp92II CATG 1 cut(s) 158
HspAI GCGC 1 cut(s) 234
Kzo9I GATC 3 cut(s) 8, 103, 142
LpnPI CCDG 8 cut(s) 35, 37, 48, 125, 169, 228, 232, 233
LweI GCATC 2 cut(s) 130, 136
MaeI CTAG 1 cut(s) 224
MalI GATC 3 cut(s) 10, 105, 144
MbiI CCGCTC 1 cut(s) 150
MboI GATC 3 cut(s) 8, 103, 142
MboII GAAGA 1 cut(s) 60
MflI RGATCY 1 cut(s) 8
MlyI GAGTC 2 cut(s) 36, 92
MnlI CCTC 6 cut(s) 31, 64, 67, 239, 254, 257
MwoI GCNNNNNNNGC 2 cut(s) 197, 289
NdeII GATC 3 cut(s) 8, 103, 142
NlaIII CATG 1 cut(s) 158
NlaIV GGNNCC 1 cut(s) 301
PflMI CCANNNNNTGG 1 cut(s) 309
PleI GAGTC 2 cut(s) 35, 92
PpsI GAGTC 2 cut(s) 35, 92
PspN4I GGNNCC 1 cut(s) 301
PspPI GGNCC 2 cut(s) 186, 299
PsuI RGATCY 1 cut(s) 8
RsaI GTAC 1 cut(s) 268
RsaNI GTAC 1 cut(s) 267
Sau3AI GATC 3 cut(s) 8, 103, 142
Sau96I GGNCC 2 cut(s) 186, 299
SchI GAGTC 2 cut(s) 36, 92
SetI ASST 5 cut(s) 77, 140, 188, 217, 268
SfaNI GCATC 2 cut(s) 130, 136
SinI GGWCC 1 cut(s) 186
SsiI CCGC 2 cut(s) 148, 189
SspMI CTAG 1 cut(s) 224
TaqI TCGA 1 cut(s) 262
Van91I CCANNNNNTGG 1 cut(s) 309
VpaK11BI GGWCC 1 cut(s) 186
XspI CTAG 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.