Prupe.5G059800_v2.0.a1

endonuclease activity

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Reverse (-)
6436796 .. 6438168
1373 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G059800.1

Sequence Viewer

Length: 282 bp
ATGCACAGATCCGCAAGTGCTTCCAGAGTCTCAGAGGACTTGGTTGTGACCTCCTCATCAACTTCACCGCCACCTTCAACCTTCAAACCAACCACAGACGACTCTTCAGACCAGCATCTACATCTACCCACATACGATCCCCTCTCTCATGTCGCAAAGAGGGAACGGCGTCGTATCAGGTCCGCAGAGAACGCCATTCACATCATACCTCTCCTGCTCGTCCTCTGCGCCATCATCCTCTGGCTCTTTTCCAATCCAGTGATTCACCTTTTTCTAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.44

Weight (kDa)

7.02

Isoelectric Point (pI)

84.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010832)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 12, 68, 183
AclWI GGATC 2 cut(s) 3, 131
AcuI CTGAAG 1 cut(s) 90
AcyI GRCGYC 1 cut(s) 169
AgsI TTSAA 2 cut(s) 78, 85
Alw26I GTCTC 1 cut(s) 34
AlwI GGATC 2 cut(s) 3, 131
AspLEI GCGC 1 cut(s) 230
AspS9I GGNCC 1 cut(s) 180
AsuHPI GGTGA 2 cut(s) 57, 257
AvaII GGWCC 1 cut(s) 180
BccI CCATC 1 cut(s) 239
BceAI ACGGC 1 cut(s) 182
BcoDI GTCTC 1 cut(s) 34
BfaI CTAG 1 cut(s) 275
Bme18I GGWCC 1 cut(s) 180
BmgT120I GGNCC 1 cut(s) 180
BmsI GCATC 1 cut(s) 124
BsaHI GRCGYC 1 cut(s) 169
Bse1I ACTGG 1 cut(s) 257
BseGI GGATG 1 cut(s) 234
BseMII CTCAG 1 cut(s) 45
BseNI ACTGG 1 cut(s) 257
BseRI GAGGAG 1 cut(s) 43
BsmAI GTCTC 1 cut(s) 34
Bsp143I GATC 2 cut(s) 8, 136
BspACI CCGC 3 cut(s) 12, 68, 183
BspCNI CTCAG 1 cut(s) 44
BspPI GGATC 2 cut(s) 3, 131
BsrI ACTGG 1 cut(s) 257
BssMI GATC 2 cut(s) 8, 136
BssNI GRCGYC 1 cut(s) 169
Bst6I CTCTTC 1 cut(s) 109
BstACI GRCGYC 1 cut(s) 169
BstDEI CTNAG 1 cut(s) 31
BstF5I GGATG 1 cut(s) 234
BstHHI GCGC 1 cut(s) 230
BstKTI GATC 2 cut(s) 11, 139
BstMAI GTCTC 1 cut(s) 34
BstMBI GATC 2 cut(s) 8, 136
BstMWI GCNNNNNNNGC 1 cut(s) 191
BstX2I RGATCY 1 cut(s) 8
BstYI RGATCY 1 cut(s) 8
BtsCI GGATG 1 cut(s) 234
BtsIMutI CAGTG 1 cut(s) 264
CfoI GCGC 1 cut(s) 230
Cfr13I GGNCC 1 cut(s) 180
CseI GACGC 1 cut(s) 158
CviAII CATG 1 cut(s) 149
CviJI RGCY 1 cut(s) 244
CviKI_1 RGCY 1 cut(s) 244
DdeI CTNAG 1 cut(s) 31
DpnI GATC 2 cut(s) 10, 138
DpnII GATC 2 cut(s) 8, 136
Eam1104I CTCTTC 1 cut(s) 109
EarI CTCTTC 1 cut(s) 109
Eco47I GGWCC 1 cut(s) 180
Eco57I CTGAAG 1 cut(s) 90
FaeI CATG 1 cut(s) 152
FaiI YATR 3 cut(s) 133, 150, 206
FatI CATG 1 cut(s) 148
FokI GGATG 1 cut(s) 221
FspBI CTAG 1 cut(s) 275
GlaI GCGC 1 cut(s) 229
HgaI GACGC 1 cut(s) 158
HhaI GCGC 1 cut(s) 230
Hin1I GRCGYC 1 cut(s) 169
Hin1II CATG 1 cut(s) 152
Hin6I GCGC 1 cut(s) 228
HinP1I GCGC 1 cut(s) 228
HinfI GANTC 3 cut(s) 27, 101, 262
HphI GGTGA 2 cut(s) 57, 257
Hpy188I TCNGA 2 cut(s) 34, 109
Hpy188III TCNNGA 2 cut(s) 24, 275
Hpy99I CGWCG 1 cut(s) 174
HpyAV CCTTC 2 cut(s) 84, 91
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 1 cut(s) 191
HpyF3I CTNAG 1 cut(s) 31
Hsp92I GRCGYC 1 cut(s) 169
Hsp92II CATG 1 cut(s) 152
HspAI GCGC 1 cut(s) 228
Kzo9I GATC 2 cut(s) 8, 136
LpnPI CCDG 6 cut(s) 37, 125, 163, 226, 227, 270
LweI GCATC 1 cut(s) 124
MaeI CTAG 1 cut(s) 275
MaeIII GTNAC 1 cut(s) 46
MalI GATC 2 cut(s) 10, 138
MboI GATC 2 cut(s) 8, 136
MboII GAAGA 1 cut(s) 96
MflI RGATCY 1 cut(s) 8
MlyI GAGTC 2 cut(s) 36, 95
MnlI CCTC 8 cut(s) 28, 61, 64, 152, 153, 219, 233, 248
MwoI GCNNNNNNNGC 1 cut(s) 191
NdeII GATC 2 cut(s) 8, 136
NlaIII CATG 1 cut(s) 152
NmuCI GTSAC 1 cut(s) 46
PfeI GAWTC 1 cut(s) 262
PleI GAGTC 2 cut(s) 35, 95
PpsI GAGTC 2 cut(s) 35, 95
PspPI GGNCC 1 cut(s) 180
PsuI RGATCY 1 cut(s) 8
Sau3AI GATC 2 cut(s) 8, 136
Sau96I GGNCC 1 cut(s) 180
SchI GAGTC 2 cut(s) 36, 95
SetI ASST 6 cut(s) 53, 76, 83, 182, 211, 270
SfaNI GCATC 1 cut(s) 124
SinI GGWCC 1 cut(s) 180
SsiI CCGC 3 cut(s) 12, 68, 183
SspMI CTAG 1 cut(s) 275
TfiI GAWTC 1 cut(s) 262
TscAI CASTG 1 cut(s) 264
TseFI GTSAC 1 cut(s) 46
Tsp45I GTSAC 1 cut(s) 46
TspRI CASTG 1 cut(s) 264
VpaK11BI GGWCC 1 cut(s) 180
XbaI TCTAGA 1 cut(s) 274
XspI CTAG 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.