AT4G17010

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0007685
Physical Location & Seq
Forward (+)
9575812 .. 9577967
2156 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G17010.1

Sequence Viewer

Length: 483 bp
ATGAACAAGCTGTTGGAATATGGGAGAAAAGCTATGTTCTATGTGAGAGTTCTCTCCGGCTATGAAGAAAGGAGAATCCGGAGTTACAGGTTGCAACTCGAAAAGCGTATCCAGCAGGCTAACCAAAGGAAAGTAGAGATAAACAGACTTCCAGAGCAGATTGTATTATCTGAAGTCCGCCGTATGGTTGAGGAGATGCAGAATTTGAATAAGCAGATTGAGAATACGGAGGCTCAAATTGAAGACTACTTCAAACCGATAGACAAGCATGCTAGTACCATAATGGAAATTCAGCTCGAAGGAGAGAAGAAAACGATGGGGACAATGATGAACGCAACACAACAGGAAGCTATACGAAAGATTGAAGAAGCTGAGAAACTCGCTCGGGCACGTGGAAATGCAAATGTGACTACAGATGCAAACATGGGAGATAAGATCCAGGATTCAGAGTCCTCAGCCAACGAAAAATCTCAAGCAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

160

Amino Acids

18.68

Weight (kDa)

8.75

Isoelectric Point (pI)

52.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 78
AciI CCGC 1 cut(s) 178
AclWI GGATC 1 cut(s) 430
AcsI RAATTY 2 cut(s) 202, 288
AcuI CTGAAG 1 cut(s) 192
AcvI CACGTG 1 cut(s) 392
AfaI GTAC 1 cut(s) 277
AfiI CCNNNNNNNGG 1 cut(s) 184
AgsI TTSAA 4 cut(s) 208, 242, 253, 365
AjnI CCWGG 1 cut(s) 438
AjuI GAANNNNNNNTTGG 1 cut(s) 28
AluBI AGCT 5 cut(s) 10, 32, 295, 350, 371
AluI AGCT 5 cut(s) 10, 32, 295, 350, 371
AlwI GGATC 1 cut(s) 430
Ama87I CYCGRG 1 cut(s) 384
Aor13HI TCCGGA 1 cut(s) 78
ApoI RAATTY 2 cut(s) 202, 288
AvaI CYCGRG 1 cut(s) 384
BaeGI GKGCMC 1 cut(s) 391
BbrPI CACGTG 1 cut(s) 392
BbsI GAAGAC 1 cut(s) 249
BbvCI CCTCAGC 1 cut(s) 454
BccI CCATC 1 cut(s) 310
BceAI ACGGC 1 cut(s) 165
BciT130I CCWGG 1 cut(s) 440
BciVI GTATCC 1 cut(s) 119
BfaI CTAG 1 cut(s) 273
BfmI CTRYAG 1 cut(s) 411
BfuI GTATCC 1 cut(s) 119
Bme1390I CCNGG 1 cut(s) 440
BmeT110I CYCGRG 1 cut(s) 384
BmrFI CCNGG 1 cut(s) 440
BmsI GCATC 2 cut(s) 186, 406
BpiI GAAGAC 1 cut(s) 249
Bpu10I CCTNAGC 1 cut(s) 454
BpuEI CTTGAG 1 cut(s) 456
BsaAI YACGTR 1 cut(s) 392
BsaWI WCCGGW 1 cut(s) 78
Bsc4I CCNNNNNNNGG 1 cut(s) 184
BseAI TCCGGA 1 cut(s) 78
BseBI CCWGG 1 cut(s) 440
BseLI CCNNNNNNNGG 1 cut(s) 184
BseMII CTCAG 2 cut(s) 363, 468
BseRI GAGGAG 1 cut(s) 206
BseSI GKGCMC 1 cut(s) 391
BsiHKCI CYCGRG 1 cut(s) 384
BsiSI CCGG 2 cut(s) 57, 79
BslFI GGGAC 1 cut(s) 334
BslI CCNNNNNNNGG 1 cut(s) 184
BsmFI GGGAC 1 cut(s) 334
BsoBI CYCGRG 1 cut(s) 384
Bsp1286I GDGCHC 1 cut(s) 391
Bsp13I TCCGGA 1 cut(s) 78
Bsp143I GATC 1 cut(s) 435
BspACI CCGC 1 cut(s) 178
BspCNI CTCAG 2 cut(s) 364, 467
BspEI TCCGGA 1 cut(s) 78
BspPI GGATC 1 cut(s) 430
BssMI GATC 1 cut(s) 435
Bst2UI CCWGG 1 cut(s) 440
BstBAI YACGTR 1 cut(s) 392
BstC8I GCNNGC 2 cut(s) 117, 270
BstDEI CTNAG 2 cut(s) 372, 454
BstKTI GATC 1 cut(s) 438
BstMBI GATC 1 cut(s) 435
BstMWI GCNNNNNNNGC 1 cut(s) 112
BstNI CCWGG 1 cut(s) 440
BstNSI RCATGY 1 cut(s) 272
BstSCI CCNGG 1 cut(s) 438
BstSFI CTRYAG 1 cut(s) 411
BstSLI GKGCMC 1 cut(s) 391
BstV2I GAAGAC 1 cut(s) 249
BstX2I RGATCY 1 cut(s) 435
BstYI RGATCY 1 cut(s) 435
BsuI GTATCC 1 cut(s) 119
Cac8I GCNNGC 2 cut(s) 117, 270
Csp6I GTAC 1 cut(s) 276
CviAII CATG 2 cut(s) 269, 424
CviJI RGCY 9 cut(s) 10, 32, 60, 119, 233, 295, 350, 371, 458
CviKI_1 RGCY 9 cut(s) 10, 32, 60, 119, 233, 295, 350, 371, 458
CviQI GTAC 1 cut(s) 276
DdeI CTNAG 2 cut(s) 372, 454
DpnI GATC 1 cut(s) 437
DpnII GATC 1 cut(s) 435
EciI GGCGGA 1 cut(s) 167
Eco57I CTGAAG 1 cut(s) 192
Eco72I CACGTG 1 cut(s) 392
Eco88I CYCGRG 1 cut(s) 384
EcoRII CCWGG 1 cut(s) 438
FaeI CATG 2 cut(s) 272, 427
FaiI YATR 9 cut(s) 21, 35, 42, 63, 185, 270, 281, 353, 425
FaqI GGGAC 1 cut(s) 334
FatI CATG 2 cut(s) 268, 423
FspBI CTAG 1 cut(s) 273
HapII CCGG 2 cut(s) 57, 79
Hin1II CATG 2 cut(s) 272, 427
HinfI GANTC 3 cut(s) 75, 443, 449
HpaII CCGG 2 cut(s) 57, 79
Hpy188I TCNGA 2 cut(s) 172, 448
Hpy188III TCNNGA 2 cut(s) 79, 152
HpyAV CCTTC 1 cut(s) 293
HpyCH4IV ACGT 1 cut(s) 391
HpyCH4V TGCA 4 cut(s) 94, 199, 401, 419
HpyF10VI GCNNNNNNNGC 1 cut(s) 112
HpyF3I CTNAG 2 cut(s) 372, 454
HpySE526I ACGT 1 cut(s) 391
Hsp92II CATG 2 cut(s) 272, 427
Kpn2I TCCGGA 1 cut(s) 78
Kzo9I GATC 1 cut(s) 435
LpnPI CCDG 9 cut(s) 70, 73, 92, 101, 125, 165, 329, 425, 452
LweI GCATC 2 cut(s) 186, 406
MaeI CTAG 1 cut(s) 273
MaeII ACGT 1 cut(s) 391
MaeIII GTNAC 2 cut(s) 83, 406
MalI GATC 1 cut(s) 437
MboI GATC 1 cut(s) 435
MboII GAAGA 4 cut(s) 77, 254, 319, 377
MflI RGATCY 1 cut(s) 435
MhlI GDGCHC 1 cut(s) 391
MluCI AATT 3 cut(s) 202, 237, 288
MlyI GAGTC 1 cut(s) 458
MnlI CCTC 3 cut(s) 184, 223, 463
MroI TCCGGA 1 cut(s) 78
MspI CCGG 2 cut(s) 57, 79
MspR9I CCNGG 1 cut(s) 440
MvaI CCWGG 1 cut(s) 440
MwoI GCNNNNNNNGC 1 cut(s) 112
NdeII GATC 1 cut(s) 435
NlaIII CATG 2 cut(s) 272, 427
NmuCI GTSAC 1 cut(s) 406
NspI RCATGY 1 cut(s) 272
PaeI GCATGC 1 cut(s) 272
PfeI GAWTC 2 cut(s) 75, 443
PfoI TCCNGGA 1 cut(s) 438
PleI GAGTC 1 cut(s) 457
PmaCI CACGTG 1 cut(s) 392
PmlI CACGTG 1 cut(s) 392
PpsI GAGTC 1 cut(s) 457
Ppu21I YACGTR 1 cut(s) 392
Psp6I CCWGG 1 cut(s) 438
PspCI CACGTG 1 cut(s) 392
PspGI CCWGG 1 cut(s) 438
PsuI RGATCY 1 cut(s) 435
RsaI GTAC 1 cut(s) 277
RsaNI GTAC 1 cut(s) 276
Sau3AI GATC 1 cut(s) 435
SchI GAGTC 1 cut(s) 458
ScrFI CCNGG 1 cut(s) 440
SduI GDGCHC 1 cut(s) 391
SetI ASST 7 cut(s) 12, 34, 92, 297, 352, 373, 394
SfaNI GCATC 2 cut(s) 186, 406
SfcI CTRYAG 1 cut(s) 411
SmlI CTYRAG 1 cut(s) 471
SmoI CTYRAG 1 cut(s) 471
SphI GCATGC 1 cut(s) 272
Sse9I AATT 3 cut(s) 202, 237, 288
SsiI CCGC 1 cut(s) 178
SspMI CTAG 1 cut(s) 273
StyD4I CCNGG 1 cut(s) 438
TaiI ACGT 1 cut(s) 394
TaqI TCGA 2 cut(s) 99, 297
TasI AATT 3 cut(s) 202, 237, 288
TfiI GAWTC 2 cut(s) 75, 443
TseFI GTSAC 1 cut(s) 406
Tsp45I GTSAC 1 cut(s) 406
TspDTI ATGAA 3 cut(s) 17, 78, 344
TspGWI ACGGA 1 cut(s) 242
XapI RAATTY 2 cut(s) 202, 288
XceI RCATGY 1 cut(s) 272
XspI CTAG 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.