Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0007685

Physical Location & Seq

Genomic Coordinates Reverse (-)

6313632 .. 6317976

Gene Structure 4345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G058400.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGAACAAGCTGATTGAATTTGGAAGGAAAGCTCTATTCTATGCGAGGGTTCTTTCGGGCTACGAAGAACGGAGAATCCGATCGTTTCGGTTGGAGGTTGAAAAGCGTCTGAAAGAGGCAAATGAGCGGAAGTTAGCCATAAGAAAGATCCCTGAGCAAACAATTTTGTCGGAGGTTCGTCGTATGGTTGAGGAGATGAAAACTTTAAATAGGAAGCTGGAAGAAACGGAAGCTGCTATTGAAGAGTACTTCAAGCCGATTGACAAAGAGGCTGAGATGATAATGAAAACGCAACTTGAAGGAGAGGAGAGGACAATGAAGGAGATGATGAAAGCCATGCATCAACAGGCTTTGCTTGAGAAAGCTGAAGCGGAGAAAACAACAGCAGCAGCACAAATTTTGGAAACAAACCAGAAGAACCAAGACTCGAGACCCAAGACCCAACATCTGCCACCGGCCCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

155

Amino Acids

18.18

Weight (kDa)

9.04

Isoelectric Point (pI)

56.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007685)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17010
fragaria_vesca	FvH4_5g20230 FvH4_5g20230
malus_domestica	MD04G1051900.v1.1 MD06G1048200.v1.1
prunus_persica	Prupe.5G058400_v2.0.a1 Prupe.5G058400_v2.0.a1 Prupe.5G058400_v2.0.a1 Prupe.5G058400_v2.0.a1 Prupe.5G058400_v2.0.a1 Prupe.5G058400_v2.0.a1 Prupe.5G058400_v2.0.a1
pyrus_communis	pycom04g04560 pycom06g04120
rosa_chinensis	RchiOBHm_Chr7g0205301
rosa_multiflora	Rmu_sc0001072.1_g000020
rosa_roxburghii	Rroxscaffold_3G00252490
rosa_rugosa	Rorug07G0089600
rosa_samantha	Rh7AG220100 Rh7BG216100 Rh7CG232800 Rh7CG233000 Rh7DG227100
rosa_wichuraiana	Rw7G019030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	127
AciI	CCGC	2 cut(s)	127, 371
AclWI	GGATC	1 cut(s)	142
AcsI	RAATTY	2 cut(s)	17, 396
AcuI	CTGAAG	1 cut(s)	387
AfaI	GTAC	1 cut(s)	248
AgsI	TTSAA	5 cut(s)	17, 101, 242, 253, 299
AloI	GAACNNNNNNTCC	2 cut(s)	60, 92
AluBI	AGCT	5 cut(s)	10, 32, 217, 233, 365
AluI	AGCT	5 cut(s)	10, 32, 217, 233, 365
Alw26I	GTCTC	1 cut(s)	424
AlwI	GGATC	1 cut(s)	142
Ama87I	CYCGRG	1 cut(s)	427
AoxI	GGCC	1 cut(s)	456
ApeKI	GCWGC	3 cut(s)	233, 386, 389
ApoI	RAATTY	2 cut(s)	17, 396
AspS9I	GGNCC	1 cut(s)	457
AvaI	CYCGRG	1 cut(s)	427
BbvI	GCAGC	3 cut(s)	220, 398, 401
BcoDI	GTCTC	1 cut(s)	424
BisI	GCNGC	3 cut(s)	234, 387, 390
BlsI	GCNGC	3 cut(s)	235, 388, 391
BmcAI	AGTACT	1 cut(s)	248
BmeT110I	CYCGRG	1 cut(s)	427
BmgT120I	GGNCC	1 cut(s)	457
BmiI	GGNNCC	1 cut(s)	459
BmsI	GCATC	1 cut(s)	349
Bpu10I	CCTNAGC	1 cut(s)	153
BpuEI	CTTGAG	1 cut(s)	377
BsaI	GGTCTC	1 cut(s)	424
Bse118I	RCCGGY	1 cut(s)	454
BseMII	CTCAG	2 cut(s)	144, 264
BseRI	GAGGAG	2 cut(s)	206, 320
BseXI	GCAGC	3 cut(s)	220, 398, 401
Bsh1285I	CGRYCG	1 cut(s)	83
BshFI	GGCC	1 cut(s)	458
BsiEI	CGRYCG	1 cut(s)	83
BsiHKCI	CYCGRG	1 cut(s)	427
BsiSI	CCGG	1 cut(s)	455
BsmAI	GTCTC	1 cut(s)	424
BsnI	GGCC	1 cut(s)	458
Bso31I	GGTCTC	1 cut(s)	424
BsoBI	CYCGRG	1 cut(s)	427
Bsp143I	GATC	2 cut(s)	80, 147
BspACI	CCGC	2 cut(s)	127, 371
BspANI	GGCC	1 cut(s)	458
BspCNI	CTCAG	2 cut(s)	145, 265
BspLI	GGNNCC	1 cut(s)	459
BspPI	GGATC	1 cut(s)	142
BspTNI	GGTCTC	1 cut(s)	424
BsrBI	CCGCTC	1 cut(s)	127
BsrFI	RCCGGY	1 cut(s)	454
BssAI	RCCGGY	1 cut(s)	454
BssMI	GATC	2 cut(s)	80, 147
Bst6I	CTCTTC	1 cut(s)	237
BstDEI	CTNAG	2 cut(s)	153, 273
BstKTI	GATC	2 cut(s)	83, 150
BstMAI	GTCTC	1 cut(s)	424
BstMBI	GATC	2 cut(s)	80, 147
BstMCI	CGRYCG	1 cut(s)	83
BstV1I	GCAGC	3 cut(s)	220, 398, 401
BstX2I	RGATCY	1 cut(s)	147
BstYI	RGATCY	1 cut(s)	147
BsuRI	GGCC	1 cut(s)	458
Cfr10I	RCCGGY	1 cut(s)	454
Cfr13I	GGNCC	1 cut(s)	457
CseI	GACGC	1 cut(s)	95
Csp6I	GTAC	1 cut(s)	247
CviAII	CATG	2 cut(s)	337, 462
CviQI	GTAC	1 cut(s)	247
DdeI	CTNAG	2 cut(s)	153, 273
DpnI	GATC	2 cut(s)	82, 149
DpnII	GATC	2 cut(s)	80, 147
DraI	TTTAAA	1 cut(s)	207
Eam1104I	CTCTTC	1 cut(s)	237
EarI	CTCTTC	1 cut(s)	237
Eco31I	GGTCTC	1 cut(s)	424
Eco57I	CTGAAG	1 cut(s)	387
Eco88I	CYCGRG	1 cut(s)	427
EcoT22I	ATGCAT	1 cut(s)	342
FaeI	CATG	2 cut(s)	340, 465
FaiI	YATR	5 cut(s)	42, 140, 185, 338, 463
FatI	CATG	2 cut(s)	336, 461
Fnu4HI	GCNGC	3 cut(s)	234, 387, 390
Fsp4HI	GCNGC	3 cut(s)	234, 387, 390
GluI	GCNGC	3 cut(s)	234, 387, 390
HaeIII	GGCC	1 cut(s)	458
HapII	CCGG	1 cut(s)	455
HgaI	GACGC	1 cut(s)	95
Hin1II	CATG	2 cut(s)	340, 465
HinfI	GANTC	2 cut(s)	75, 425
HpaII	CCGG	1 cut(s)	455
Hpy188I	TCNGA	3 cut(s)	80, 111, 172
Hpy188III	TCNNGA	1 cut(s)	429
Hpy99I	CGWCG	1 cut(s)	183
HpyAV	CCTTC	3 cut(s)	18, 293, 313
HpyCH4V	TGCA	1 cut(s)	340
HpyF3I	CTNAG	2 cut(s)	153, 273
Hsp92II	CATG	2 cut(s)	340, 465
Kzo9I	GATC	2 cut(s)	80, 147
LpnPI	CCDG	4 cut(s)	165, 203, 332, 425
Lsp1109I	GCAGC	3 cut(s)	220, 398, 401
LweI	GCATC	1 cut(s)	349
MalI	GATC	2 cut(s)	82, 149
MbiI	CCGCTC	1 cut(s)	127
MboI	GATC	2 cut(s)	80, 147
MboII	GAAGA	4 cut(s)	77, 233, 254, 427
MflI	RGATCY	1 cut(s)	147
MluCI	AATT	3 cut(s)	17, 162, 396
MlyI	GAGTC	1 cut(s)	419
MmeI	TCCRAC	2 cut(s)	72, 150
MnlI	CCTC	8 cut(s)	39, 88, 109, 166, 184, 262, 298, 303
Mph1103I	ATGCAT	1 cut(s)	342
MseI	TTAA	1 cut(s)	206
MspI	CCGG	1 cut(s)	455
NdeII	GATC	2 cut(s)	80, 147
NlaIII	CATG	2 cut(s)	340, 465
NlaIV	GGNNCC	1 cut(s)	459
NsiI	ATGCAT	1 cut(s)	342
PaeR7I	CTCGAG	1 cut(s)	427
PcsI	WCGNNNNNNNCGW	1 cut(s)	76
PfeI	GAWTC	1 cut(s)	75
PkrI	GCNGC	3 cut(s)	235, 388, 391
Ple19I	CGATCG	1 cut(s)	83
PleI	GAGTC	1 cut(s)	419
PpsI	GAGTC	1 cut(s)	419
PspN4I	GGNNCC	1 cut(s)	459
PspPI	GGNCC	1 cut(s)	457
PsuI	RGATCY	1 cut(s)	147
PvuI	CGATCG	1 cut(s)	83
RsaI	GTAC	1 cut(s)	248
RsaNI	GTAC	1 cut(s)	247
SaqAI	TTAA	1 cut(s)	206
SatI	GCNGC	3 cut(s)	234, 387, 390
Sau3AI	GATC	2 cut(s)	80, 147
Sau96I	GGNCC	1 cut(s)	457
ScaI	AGTACT	1 cut(s)	248
SchI	GAGTC	1 cut(s)	419
SetI	ASST	7 cut(s)	12, 34, 99, 177, 219, 235, 367
SfaNI	GCATC	1 cut(s)	349
Sfr274I	CTCGAG	1 cut(s)	427
SlaI	CTCGAG	1 cut(s)	427
SmlI	CTYRAG	2 cut(s)	356, 427
SmoI	CTYRAG	2 cut(s)	356, 427
Sse9I	AATT	3 cut(s)	17, 162, 396
SsiI	CCGC	2 cut(s)	127, 371
TaqI	TCGA	1 cut(s)	428
TasI	AATT	3 cut(s)	17, 162, 396
TatI	WGTACW	1 cut(s)	246
TfiI	GAWTC	1 cut(s)	75
Tru1I	TTAA	1 cut(s)	206
Tru9I	TTAA	1 cut(s)	206
TseI	GCWGC	3 cut(s)	233, 386, 389
TspDTI	ATGAA	5 cut(s)	17, 212, 299, 332, 344
TspGWI	ACGGA	2 cut(s)	85, 242
XapI	RAATTY	2 cut(s)	17, 396
XhoI	CTCGAG	1 cut(s)	427
ZrmI	AGTACT	1 cut(s)	248
Zsp2I	ATGCAT	1 cut(s)	342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.