Rmu_sc0001072.1_g000020

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001072.1
OG0007685
Physical Location & Seq
Forward (+)
95745 .. 99517
3773 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001072.1_g000020.1.cds

Sequence Viewer

Length: 495 bp
atgcgggagctgtgtagccgtcgttgtgagtatttgctcctatacgtcaggtcccaagttctgttcaaacccctcgggactgggatgactgagcctcgtgttgccttcaaagaccggctactcgtgctccttccggactcaaacatagcagcagaagagcggaagctggctataagaaagcttcctgagcagactattttgtcggaggttcgccgtatggttgaagagatgcagaatttaaataagaagctagaagagactgaggctgctattgaagactacttcaagccactcgaccaagaggctcagaggataatgaaaacacaacttgaaggagaggagagaacaatgaagcagatgatgaaaaccatgcatgaccaggctatgcttgatatagctgaagaggagagaaaaataaaagcacaaatagtcgacacaaaccagaagaaccaagacccaagacctaatacccaacatctgccaccgcccccctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

19.28

Weight (kDa)

6.21

Isoelectric Point (pI)

49.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 199
AccBSI CCGCTC 1 cut(s) 160
AccI GTMKAC 1 cut(s) 432
AccIII TCCGGA 1 cut(s) 133
AciI CCGC 3 cut(s) 4, 160, 485
AcsI RAATTY 1 cut(s) 235
AcuI CTGAAG 1 cut(s) 420
AgsI TTSAA 6 cut(s) 67, 109, 224, 275, 286, 332
AjnI CCWGG 1 cut(s) 378
AluBI AGCT 5 cut(s) 10, 166, 181, 250, 398
AluI AGCT 5 cut(s) 10, 166, 181, 250, 398
Alw21I GWGCWC 1 cut(s) 129
Alw26I GTCTC 1 cut(s) 251
Ama87I CYCGRG 1 cut(s) 74
Aor13HI TCCGGA 1 cut(s) 133
ApeKI GCWGC 2 cut(s) 149, 266
ApoI RAATTY 1 cut(s) 235
AspS9I GGNCC 1 cut(s) 51
AvaI CYCGRG 1 cut(s) 74
AvaII GGWCC 1 cut(s) 51
BauI CACGAG 2 cut(s) 96, 122
BbsI GAAGAC 1 cut(s) 282
Bbv12I GWGCWC 1 cut(s) 129
BbvI GCAGC 2 cut(s) 161, 253
BceAI ACGGC 2 cut(s) 3, 198
BciT130I CCWGG 1 cut(s) 380
BcoDI GTCTC 1 cut(s) 251
BfaI CTAG 1 cut(s) 251
BisI GCNGC 2 cut(s) 150, 267
BlsI GCNGC 2 cut(s) 151, 268
Bme1390I CCNGG 1 cut(s) 380
Bme18I GGWCC 1 cut(s) 51
BmeT110I CYCGRG 1 cut(s) 74
BmgT120I GGNCC 1 cut(s) 51
BmiI GGNNCC 1 cut(s) 53
BmrFI CCNGG 1 cut(s) 380
BmrI ACTGGG 1 cut(s) 90
BmsI GCATC 1 cut(s) 219
BmuI ACTGGG 1 cut(s) 90
BpiI GAAGAC 1 cut(s) 282
Bpu10I CCTNAGC 1 cut(s) 186
BsaJI CCNNGG 1 cut(s) 73
BsaWI WCCGGW 1 cut(s) 133
BsaXI ACNNNNNCTCC 2 cut(s) 111, 141
Bse118I RCCGGY 1 cut(s) 114
Bse1I ACTGG 1 cut(s) 85
BseAI TCCGGA 1 cut(s) 133
BseBI CCWGG 1 cut(s) 380
BseDI CCNNGG 1 cut(s) 73
BseGI GGATG 1 cut(s) 90
BseMII CTCAG 4 cut(s) 81, 177, 252, 320
BseNI ACTGG 1 cut(s) 85
BseRI GAGGAG 2 cut(s) 353, 419
BseXI GCAGC 2 cut(s) 161, 253
BsiHKAI GWGCWC 1 cut(s) 129
BsiHKCI CYCGRG 1 cut(s) 74
BsiSI CCGG 2 cut(s) 115, 134
BslFI GGGAC 2 cut(s) 37, 91
BsmAI GTCTC 1 cut(s) 251
BsmFI GGGAC 2 cut(s) 37, 91
BsoBI CYCGRG 1 cut(s) 74
Bsp1286I GDGCHC 1 cut(s) 129
Bsp13I TCCGGA 1 cut(s) 133
BspACI CCGC 3 cut(s) 4, 160, 485
BspCNI CTCAG 4 cut(s) 82, 178, 253, 319
BspEI TCCGGA 1 cut(s) 133
BspLI GGNNCC 1 cut(s) 53
BspQI GCTCTTC 1 cut(s) 150
BsrBI CCGCTC 1 cut(s) 160
BsrFI RCCGGY 1 cut(s) 114
BsrI ACTGG 1 cut(s) 85
BssAI RCCGGY 1 cut(s) 114
BssECI CCNNGG 1 cut(s) 73
BssSI CACGAG 2 cut(s) 96, 122
Bst2BI CACGAG 2 cut(s) 96, 122
Bst2UI CCWGG 1 cut(s) 380
Bst6I CTCTTC 4 cut(s) 150, 219, 249, 396
BstC8I GCNNGC 1 cut(s) 168
BstDEI CTNAG 4 cut(s) 90, 186, 261, 306
BstF5I GGATG 1 cut(s) 90
BstMAI GTCTC 1 cut(s) 251
BstMWI GCNNNNNNNGC 2 cut(s) 124, 187
BstNI CCWGG 1 cut(s) 380
BstSCI CCNGG 1 cut(s) 378
BstV1I GCAGC 2 cut(s) 161, 253
BstV2I GAAGAC 1 cut(s) 282
BtsCI GGATG 1 cut(s) 90
Cac8I GCNNGC 1 cut(s) 168
Cfr10I RCCGGY 1 cut(s) 114
Cfr13I GGNCC 1 cut(s) 51
CviAII CATG 2 cut(s) 370, 374
DdeI CTNAG 4 cut(s) 90, 186, 261, 306
DraI TTTAAA 1 cut(s) 240
DrdI GACNNNNNNGTC 1 cut(s) 199
DseDI GACNNNNNNGTC 1 cut(s) 199
Eam1104I CTCTTC 4 cut(s) 150, 219, 249, 396
EarI CTCTTC 4 cut(s) 150, 219, 249, 396
Eco47I GGWCC 1 cut(s) 51
Eco57I CTGAAG 1 cut(s) 420
Eco88I CYCGRG 1 cut(s) 74
EcoO109I RGGNCCY 1 cut(s) 51
EcoRII CCWGG 1 cut(s) 378
EcoT22I ATGCAT 1 cut(s) 375
FaeI CATG 2 cut(s) 373, 377
FaiI YATR 8 cut(s) 43, 146, 173, 218, 371, 375, 386, 395
FaqI GGGAC 2 cut(s) 37, 91
FatI CATG 2 cut(s) 369, 373
FblI GTMKAC 1 cut(s) 432
Fnu4HI GCNGC 2 cut(s) 150, 267
FokI GGATG 1 cut(s) 97
Fsp4HI GCNGC 2 cut(s) 150, 267
FspBI CTAG 1 cut(s) 251
GluI GCNGC 2 cut(s) 150, 267
HapII CCGG 2 cut(s) 115, 134
Hin1II CATG 2 cut(s) 373, 377
HincII GTYRAC 1 cut(s) 433
HindII GTYRAC 1 cut(s) 433
HindIII AAGCTT 1 cut(s) 179
HinfI GANTC 1 cut(s) 137
HpaII CCGG 2 cut(s) 115, 134
Hpy166II GTNNAC 1 cut(s) 433
Hpy188I TCNGA 2 cut(s) 205, 309
Hpy188III TCNNGA 3 cut(s) 76, 134, 185
Hpy8I GTNNAC 1 cut(s) 433
Hpy99I CGWCG 1 cut(s) 24
HpyAV CCTTC 3 cut(s) 115, 140, 326
HpyCH4IV ACGT 1 cut(s) 45
HpyCH4V TGCA 2 cut(s) 232, 373
HpyF10VI GCNNNNNNNGC 2 cut(s) 124, 187
HpyF3I CTNAG 4 cut(s) 90, 186, 261, 306
HpySE526I ACGT 1 cut(s) 45
Hsp92II CATG 2 cut(s) 373, 377
Kpn2I TCCGGA 1 cut(s) 133
LguI GCTCTTC 1 cut(s) 150
LmnI GCTCC 3 cut(s) 7, 42, 132
LpnPI CCDG 9 cut(s) 34, 66, 128, 147, 152, 198, 365, 392, 455
Lsp1109I GCAGC 2 cut(s) 161, 253
LweI GCATC 1 cut(s) 219
MaeI CTAG 1 cut(s) 251
MaeII ACGT 1 cut(s) 45
MbiI CCGCTC 1 cut(s) 160
MboII GAAGA 6 cut(s) 167, 236, 266, 287, 413, 457
MhlI GDGCHC 1 cut(s) 129
MluCI AATT 1 cut(s) 235
MlyI GAGTC 1 cut(s) 131
MmeI TCCRAC 1 cut(s) 183
MnlI CCTC 8 cut(s) 83, 105, 199, 256, 295, 303, 331, 397
Mph1103I ATGCAT 1 cut(s) 375
MroI TCCGGA 1 cut(s) 133
MseI TTAA 1 cut(s) 239
MspI CCGG 2 cut(s) 115, 134
MspR9I CCNGG 1 cut(s) 380
MvaI CCWGG 1 cut(s) 380
MwoI GCNNNNNNNGC 2 cut(s) 124, 187
NlaIII CATG 2 cut(s) 373, 377
NlaIV GGNNCC 1 cut(s) 53
NsiI ATGCAT 1 cut(s) 375
PciSI GCTCTTC 1 cut(s) 150
PkrI GCNGC 2 cut(s) 151, 268
PleI GAGTC 1 cut(s) 131
PpsI GAGTC 1 cut(s) 131
PpuMI RGGWCCY 1 cut(s) 51
Psp5II RGGWCCY 1 cut(s) 51
Psp6I CCWGG 1 cut(s) 378
PspGI CCWGG 1 cut(s) 378
PspN4I GGNNCC 1 cut(s) 53
PspPI GGNCC 1 cut(s) 51
PspPPI RGGWCCY 1 cut(s) 51
SalI GTCGAC 1 cut(s) 431
SapI GCTCTTC 1 cut(s) 150
SaqAI TTAA 1 cut(s) 239
SatI GCNGC 2 cut(s) 150, 267
Sau96I GGNCC 1 cut(s) 51
SchI GAGTC 1 cut(s) 131
ScrFI CCNGG 1 cut(s) 380
SduI GDGCHC 1 cut(s) 129
SetI ASST 9 cut(s) 12, 48, 53, 168, 183, 210, 252, 400, 466
SfaNI GCATC 1 cut(s) 219
SinI GGWCC 1 cut(s) 51
SmiI ATTTAAAT 1 cut(s) 240
Sse9I AATT 1 cut(s) 235
SsiI CCGC 3 cut(s) 4, 160, 485
SspMI CTAG 1 cut(s) 251
StyD4I CCNGG 1 cut(s) 378
SwaI ATTTAAAT 1 cut(s) 240
TaiI ACGT 1 cut(s) 48
TaqI TCGA 2 cut(s) 294, 432
TasI AATT 1 cut(s) 235
Tru1I TTAA 1 cut(s) 239
Tru9I TTAA 1 cut(s) 239
TseI GCWGC 2 cut(s) 149, 266
TspDTI ATGAA 3 cut(s) 332, 365, 377
VpaK11BI GGWCC 1 cut(s) 51
XapI RAATTY 1 cut(s) 235
XmiI GTMKAC 1 cut(s) 432
XspI CTAG 1 cut(s) 251
Zsp2I ATGCAT 1 cut(s) 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.