Rh7AG220100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0007685
Physical Location & Seq
Forward (+)
20461368 .. 20463421
2054 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG220100.1

Sequence Viewer

Length: 462 bp
ATGAATAAGATTTTGGATTTTGGAAGGAAAGCTCTGTTCTACGCCAGGGTTCTTTCCGGCTATGAAGAACGCAGAATCCGAAGCTATCGCTTGCAGGTCGAGAAGCGTATCAAACAGGCAGAAGAGCGGAAGCTGGCTATAAGAAAGCTTCCTGAGCAGACTATTTTGTCGGAGGTTCGCCGTATGGTTGAGGAGATGCAGAATTTAAATAAGAAGCTAGAAGAGACTGAGGCTGCTATTGAAGACTACTTCAAGCCACTCGACCAAGAGGCTCAGAGGATAATGAAAACACAACTTGAAGGAGAGGAGAGAACAATGAAGCAGATGATGAAAACCATGCATGACCAGGCTATGCTTGATATAGCTGAAGAGGAGAGAAAAATAAAAGCACAAATAGTCGACACAAACCAGAAGAACCAAGACCCAAGACCTAATACCCAACATCTGCCACCGCCCCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

153

Amino Acids

18.3

Weight (kDa)

9.07

Isoelectric Point (pI)

58.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 166
Acc36I ACCTGC 1 cut(s) 85
AccBSI CCGCTC 1 cut(s) 127
AccI GTMKAC 1 cut(s) 399
AciI CCGC 2 cut(s) 127, 452
AcsI RAATTY 1 cut(s) 202
AcuI CTGAAG 1 cut(s) 387
AgsI TTSAA 3 cut(s) 242, 253, 299
AjnI CCWGG 2 cut(s) 44, 345
AjuI GAANNNNNNNTTGG 1 cut(s) 28
AloI GAACNNNNNNTCC 2 cut(s) 60, 92
AluBI AGCT 6 cut(s) 32, 84, 133, 148, 217, 365
AluI AGCT 6 cut(s) 32, 84, 133, 148, 217, 365
Alw26I GTCTC 1 cut(s) 218
ApeKI GCWGC 1 cut(s) 233
ApoI RAATTY 1 cut(s) 202
BbsI GAAGAC 1 cut(s) 249
BbvI GCAGC 1 cut(s) 220
BceAI ACGGC 1 cut(s) 165
BciT130I CCWGG 2 cut(s) 46, 347
BcoDI GTCTC 1 cut(s) 218
BfaI CTAG 1 cut(s) 218
BfuAI ACCTGC 1 cut(s) 85
BisI GCNGC 1 cut(s) 234
BlsI GCNGC 1 cut(s) 235
Bme1390I CCNGG 2 cut(s) 46, 347
BmrFI CCNGG 2 cut(s) 46, 347
BmsI GCATC 1 cut(s) 186
BpiI GAAGAC 1 cut(s) 249
Bpu10I CCTNAGC 1 cut(s) 153
BsaJI CCNNGG 1 cut(s) 45
BseBI CCWGG 2 cut(s) 46, 347
BseDI CCNNGG 1 cut(s) 45
BseMII CTCAG 3 cut(s) 144, 219, 287
BseRI GAGGAG 3 cut(s) 206, 320, 386
BseXI GCAGC 1 cut(s) 220
BsiSI CCGG 1 cut(s) 57
BsmAI GTCTC 1 cut(s) 218
BspACI CCGC 2 cut(s) 127, 452
BspCNI CTCAG 3 cut(s) 145, 220, 286
BspMI ACCTGC 1 cut(s) 85
BspQI GCTCTTC 1 cut(s) 117
BsrBI CCGCTC 1 cut(s) 127
BssECI CCNNGG 1 cut(s) 45
Bst2UI CCWGG 2 cut(s) 46, 347
Bst6I CTCTTC 3 cut(s) 117, 216, 363
BstC8I GCNNGC 2 cut(s) 92, 135
BstDEI CTNAG 3 cut(s) 153, 228, 273
BstMAI GTCTC 1 cut(s) 218
BstMWI GCNNNNNNNGC 1 cut(s) 154
BstNI CCWGG 2 cut(s) 46, 347
BstSCI CCNGG 2 cut(s) 44, 345
BstV1I GCAGC 1 cut(s) 220
BstV2I GAAGAC 1 cut(s) 249
BveI ACCTGC 1 cut(s) 85
Cac8I GCNNGC 2 cut(s) 92, 135
CviAII CATG 2 cut(s) 337, 341
DdeI CTNAG 3 cut(s) 153, 228, 273
DraI TTTAAA 1 cut(s) 207
DrdI GACNNNNNNGTC 1 cut(s) 166
DseDI GACNNNNNNGTC 1 cut(s) 166
Eam1104I CTCTTC 3 cut(s) 117, 216, 363
EarI CTCTTC 3 cut(s) 117, 216, 363
Eco57I CTGAAG 1 cut(s) 387
EcoRII CCWGG 2 cut(s) 44, 345
EcoT22I ATGCAT 1 cut(s) 342
FaeI CATG 2 cut(s) 340, 344
FaiI YATR 7 cut(s) 63, 140, 185, 338, 342, 353, 362
FatI CATG 2 cut(s) 336, 340
FblI GTMKAC 1 cut(s) 399
Fnu4HI GCNGC 1 cut(s) 234
Fsp4HI GCNGC 1 cut(s) 234
FspBI CTAG 1 cut(s) 218
GluI GCNGC 1 cut(s) 234
HapII CCGG 1 cut(s) 57
Hin1II CATG 2 cut(s) 340, 344
HincII GTYRAC 1 cut(s) 400
HindII GTYRAC 1 cut(s) 400
HindIII AAGCTT 1 cut(s) 146
HinfI GANTC 1 cut(s) 75
HpaII CCGG 1 cut(s) 57
Hpy166II GTNNAC 1 cut(s) 400
Hpy188I TCNGA 3 cut(s) 80, 172, 276
Hpy188III TCNNGA 2 cut(s) 100, 152
Hpy8I GTNNAC 1 cut(s) 400
HpyAV CCTTC 2 cut(s) 18, 293
HpyCH4V TGCA 3 cut(s) 94, 199, 340
HpyF10VI GCNNNNNNNGC 1 cut(s) 154
HpyF3I CTNAG 3 cut(s) 153, 228, 273
Hsp92II CATG 2 cut(s) 340, 344
LguI GCTCTTC 1 cut(s) 117
Lsp1109I GCAGC 1 cut(s) 220
LweI GCATC 1 cut(s) 186
MaeI CTAG 1 cut(s) 218
MbiI CCGCTC 1 cut(s) 127
MboII GAAGA 6 cut(s) 77, 134, 233, 254, 380, 424
MluCI AATT 1 cut(s) 202
MmeI TCCRAC 1 cut(s) 150
MnlI CCTC 7 cut(s) 166, 184, 223, 262, 270, 298, 364
Mph1103I ATGCAT 1 cut(s) 342
MseI TTAA 1 cut(s) 206
MspI CCGG 1 cut(s) 57
MspR9I CCNGG 2 cut(s) 46, 347
MvaI CCWGG 2 cut(s) 46, 347
MwoI GCNNNNNNNGC 1 cut(s) 154
NlaIII CATG 2 cut(s) 340, 344
NsiI ATGCAT 1 cut(s) 342
PciSI GCTCTTC 1 cut(s) 117
PcsI WCGNNNNNNNCGW 1 cut(s) 76
PfeI GAWTC 1 cut(s) 75
PkrI GCNGC 1 cut(s) 235
Psp6I CCWGG 2 cut(s) 44, 345
PspGI CCWGG 2 cut(s) 44, 345
SalI GTCGAC 1 cut(s) 398
SapI GCTCTTC 1 cut(s) 117
SaqAI TTAA 1 cut(s) 206
SatI GCNGC 1 cut(s) 234
ScrFI CCNGG 2 cut(s) 46, 347
SetI ASST 9 cut(s) 34, 86, 99, 135, 150, 177, 219, 367, 433
SfaNI GCATC 1 cut(s) 186
SmiI ATTTAAAT 1 cut(s) 207
Sse9I AATT 1 cut(s) 202
SsiI CCGC 2 cut(s) 127, 452
SspMI CTAG 1 cut(s) 218
StyD4I CCNGG 2 cut(s) 44, 345
SwaI ATTTAAAT 1 cut(s) 207
TaqI TCGA 3 cut(s) 99, 261, 399
TasI AATT 1 cut(s) 202
TfiI GAWTC 1 cut(s) 75
Tru1I TTAA 1 cut(s) 206
Tru9I TTAA 1 cut(s) 206
TseI GCWGC 1 cut(s) 233
TspDTI ATGAA 5 cut(s) 17, 78, 299, 332, 344
XapI RAATTY 1 cut(s) 202
XmiI GTMKAC 1 cut(s) 399
XspI CTAG 1 cut(s) 218
Zsp2I ATGCAT 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.