Rh7CG233000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0007685
Physical Location & Seq
Forward (+)
21750827 .. 21753002
2176 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG233000.1

Sequence Viewer

Length: 570 bp
ATGATACGGATCCAAAACCGCATAACCGGCCCAAACAAGCCCCGACTCTGGTCAGTCTCAATCCCCAGCATTTCTTGTTTCCACTCCCCAAGATTCAACTCGGTTGGTATGAATAAGATTTTGGATTTTGGAAGGAAAGCTCTGTTCTACGCCAGGGTTCTTTCCGGCTATGAAGAACGGAGAATCCGAAGCTATCGCTTGCAGGTCGAGAAGCGTATCAAACAGGCAGAAGAGCGGAAGCTGGCTATAAGAAAGCTTCCTGAGCAGACTATTTTGTCGGAGGTTCGCCGTATGGTTGAGGAGATGCAGAATTTAAATAAGAAGCTAGAAGAGACTGAAGCTGCTATTGAAGACTACTTCAAGCCACTCGACCAAGAGGCTCAGAGGATAATGAAAACACAACTTGAAGGAGAGGAGAGAACAATGAAGCAGATGATGAAAACCATGCATGACCAGGCTATGCTTGATATAGCTGAAGAGGAGAGAAAAATAAAAGCACAAATAGTCGACACAAACCAGAAGAACCAAGACCCAAGACCTAATACCCAACATCTGCCACCGCCCCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

189

Amino Acids

22.38

Weight (kDa)

9.64

Isoelectric Point (pI)

54.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 274
Acc36I ACCTGC 1 cut(s) 193
AccBSI CCGCTC 1 cut(s) 235
AccI GTMKAC 1 cut(s) 507
AciI CCGC 3 cut(s) 19, 235, 560
AclWI GGATC 2 cut(s) 4, 17
AcsI RAATTY 1 cut(s) 310
AcuI CTGAAG 2 cut(s) 357, 495
AfiI CCNNNNNNNGG 1 cut(s) 48
AgsI TTSAA 4 cut(s) 97, 350, 361, 407
AjnI CCWGG 2 cut(s) 152, 453
AjuI GAANNNNNNNTTGG 2 cut(s) 104, 136
AloI GAACNNNNNNTCC 2 cut(s) 168, 200
AluBI AGCT 7 cut(s) 140, 192, 241, 256, 325, 341, 473
AluI AGCT 7 cut(s) 140, 192, 241, 256, 325, 341, 473
Alw26I GTCTC 2 cut(s) 61, 326
AlwI GGATC 2 cut(s) 4, 17
AoxI GGCC 1 cut(s) 28
ApeKI GCWGC 1 cut(s) 341
ApoI RAATTY 1 cut(s) 310
AspS9I GGNCC 1 cut(s) 29
BamHI GGATCC 1 cut(s) 9
BbsI GAAGAC 1 cut(s) 357
BbvI GCAGC 1 cut(s) 328
BceAI ACGGC 1 cut(s) 273
BciT130I CCWGG 2 cut(s) 154, 455
BcoDI GTCTC 2 cut(s) 61, 326
BfaI CTAG 1 cut(s) 326
BfuAI ACCTGC 1 cut(s) 193
BisI GCNGC 1 cut(s) 342
BlsI GCNGC 1 cut(s) 343
Bme1390I CCNGG 2 cut(s) 154, 455
BmgT120I GGNCC 1 cut(s) 29
BmiI GGNNCC 1 cut(s) 11
BmrFI CCNGG 2 cut(s) 154, 455
BmsI GCATC 1 cut(s) 294
BoxI GACNNNNGTC 1 cut(s) 49
BpiI GAAGAC 1 cut(s) 357
Bpu10I CCTNAGC 1 cut(s) 261
BsaBI GATNNNNATC 1 cut(s) 8
BsaJI CCNNGG 1 cut(s) 153
Bsc4I CCNNNNNNNGG 1 cut(s) 48
Bse118I RCCGGY 1 cut(s) 26
Bse8I GATNNNNATC 1 cut(s) 8
BseBI CCWGG 2 cut(s) 154, 455
BseDI CCNNGG 1 cut(s) 153
BseJI GATNNNNATC 1 cut(s) 8
BseLI CCNNNNNNNGG 1 cut(s) 48
BseMII CTCAG 2 cut(s) 252, 395
BseRI GAGGAG 3 cut(s) 314, 428, 494
BseXI GCAGC 1 cut(s) 328
BseYI CCCAGC 1 cut(s) 65
BshFI GGCC 1 cut(s) 30
BsiSI CCGG 2 cut(s) 27, 165
BslI CCNNNNNNNGG 1 cut(s) 48
BsmAI GTCTC 2 cut(s) 61, 326
BsnI GGCC 1 cut(s) 30
Bsp143I GATC 1 cut(s) 9
BspACI CCGC 3 cut(s) 19, 235, 560
BspANI GGCC 1 cut(s) 30
BspCNI CTCAG 2 cut(s) 253, 394
BspLI GGNNCC 1 cut(s) 11
BspMI ACCTGC 1 cut(s) 193
BspPI GGATC 2 cut(s) 4, 17
BspQI GCTCTTC 1 cut(s) 225
BsrBI CCGCTC 1 cut(s) 235
BsrFI RCCGGY 1 cut(s) 26
BssAI RCCGGY 1 cut(s) 26
BssECI CCNNGG 1 cut(s) 153
BssMI GATC 1 cut(s) 9
Bst2UI CCWGG 2 cut(s) 154, 455
Bst6I CTCTTC 3 cut(s) 225, 324, 471
BstC8I GCNNGC 2 cut(s) 200, 243
BstDEI CTNAG 2 cut(s) 261, 381
BstKTI GATC 1 cut(s) 12
BstMAI GTCTC 2 cut(s) 61, 326
BstMBI GATC 1 cut(s) 9
BstMWI GCNNNNNNNGC 2 cut(s) 27, 262
BstNI CCWGG 2 cut(s) 154, 455
BstPAI GACNNNNGTC 1 cut(s) 49
BstSCI CCNGG 2 cut(s) 152, 453
BstV1I GCAGC 1 cut(s) 328
BstV2I GAAGAC 1 cut(s) 357
BstX2I RGATCY 1 cut(s) 9
BstYI RGATCY 1 cut(s) 9
BsuRI GGCC 1 cut(s) 30
BveI ACCTGC 1 cut(s) 193
Cac8I GCNNGC 2 cut(s) 200, 243
Cfr10I RCCGGY 1 cut(s) 26
Cfr13I GGNCC 1 cut(s) 29
CviAII CATG 2 cut(s) 445, 449
DdeI CTNAG 2 cut(s) 261, 381
DpnI GATC 1 cut(s) 11
DpnII GATC 1 cut(s) 9
DraI TTTAAA 1 cut(s) 315
DrdI GACNNNNNNGTC 1 cut(s) 274
DseDI GACNNNNNNGTC 1 cut(s) 274
Eam1104I CTCTTC 3 cut(s) 225, 324, 471
EarI CTCTTC 3 cut(s) 225, 324, 471
Eco57I CTGAAG 2 cut(s) 357, 495
EcoRII CCWGG 2 cut(s) 152, 453
EcoT22I ATGCAT 1 cut(s) 450
FaeI CATG 2 cut(s) 448, 452
FaiI YATR 9 cut(s) 23, 110, 171, 248, 293, 446, 450, 461, 470
FatI CATG 2 cut(s) 444, 448
FblI GTMKAC 1 cut(s) 507
Fnu4HI GCNGC 1 cut(s) 342
Fsp4HI GCNGC 1 cut(s) 342
FspBI CTAG 1 cut(s) 326
GluI GCNGC 1 cut(s) 342
GsaI CCCAGC 1 cut(s) 69
HaeIII GGCC 1 cut(s) 30
HapII CCGG 2 cut(s) 27, 165
Hin1II CATG 2 cut(s) 448, 452
HincII GTYRAC 1 cut(s) 508
HindII GTYRAC 1 cut(s) 508
HindIII AAGCTT 1 cut(s) 254
HinfI GANTC 3 cut(s) 45, 93, 183
HpaII CCGG 2 cut(s) 27, 165
Hpy166II GTNNAC 1 cut(s) 508
Hpy188I TCNGA 3 cut(s) 188, 280, 384
Hpy188III TCNNGA 2 cut(s) 208, 260
Hpy8I GTNNAC 1 cut(s) 508
HpyAV CCTTC 2 cut(s) 126, 401
HpyCH4V TGCA 3 cut(s) 202, 307, 448
HpyF10VI GCNNNNNNNGC 2 cut(s) 27, 262
HpyF3I CTNAG 2 cut(s) 261, 381
Hsp92II CATG 2 cut(s) 448, 452
Kzo9I GATC 1 cut(s) 9
LguI GCTCTTC 1 cut(s) 225
Lsp1109I GCAGC 1 cut(s) 328
LweI GCATC 1 cut(s) 294
MaeI CTAG 1 cut(s) 326
MalI GATC 1 cut(s) 11
MbiI CCGCTC 1 cut(s) 235
MboI GATC 1 cut(s) 9
MboII GAAGA 6 cut(s) 185, 242, 341, 362, 488, 532
MflI RGATCY 1 cut(s) 9
MluCI AATT 1 cut(s) 310
MlyI GAGTC 1 cut(s) 39
MmeI TCCRAC 1 cut(s) 258
MnlI CCTC 6 cut(s) 274, 292, 370, 378, 406, 472
Mph1103I ATGCAT 1 cut(s) 450
MseI TTAA 1 cut(s) 314
MspI CCGG 2 cut(s) 27, 165
MspR9I CCNGG 2 cut(s) 154, 455
MvaI CCWGG 2 cut(s) 154, 455
MwoI GCNNNNNNNGC 2 cut(s) 27, 262
NdeII GATC 1 cut(s) 9
NlaIII CATG 2 cut(s) 448, 452
NlaIV GGNNCC 1 cut(s) 11
NsiI ATGCAT 1 cut(s) 450
PciSI GCTCTTC 1 cut(s) 225
PcsI WCGNNNNNNNCGW 1 cut(s) 184
PfeI GAWTC 2 cut(s) 93, 183
PkrI GCNGC 1 cut(s) 343
PleI GAGTC 1 cut(s) 39
PpsI GAGTC 1 cut(s) 39
PshAI GACNNNNGTC 1 cut(s) 49
Psp6I CCWGG 2 cut(s) 152, 453
PspFI CCCAGC 1 cut(s) 65
PspGI CCWGG 2 cut(s) 152, 453
PspN4I GGNNCC 1 cut(s) 11
PspPI GGNCC 1 cut(s) 29
PsuI RGATCY 1 cut(s) 9
SalI GTCGAC 1 cut(s) 506
SapI GCTCTTC 1 cut(s) 225
SaqAI TTAA 1 cut(s) 314
SatI GCNGC 1 cut(s) 342
Sau3AI GATC 1 cut(s) 9
Sau96I GGNCC 1 cut(s) 29
SchI GAGTC 1 cut(s) 39
ScrFI CCNGG 2 cut(s) 154, 455
SfaNI GCATC 1 cut(s) 294
SmiI ATTTAAAT 1 cut(s) 315
Sse9I AATT 1 cut(s) 310
SsiI CCGC 3 cut(s) 19, 235, 560
SspMI CTAG 1 cut(s) 326
StyD4I CCNGG 2 cut(s) 152, 453
SwaI ATTTAAAT 1 cut(s) 315
TaqI TCGA 3 cut(s) 207, 369, 507
TasI AATT 1 cut(s) 310
TfiI GAWTC 2 cut(s) 93, 183
Tru1I TTAA 1 cut(s) 314
Tru9I TTAA 1 cut(s) 314
TseI GCWGC 1 cut(s) 341
TspDTI ATGAA 5 cut(s) 125, 186, 407, 440, 452
TspGWI ACGGA 2 cut(s) 22, 193
XapI RAATTY 1 cut(s) 310
XmiI GTMKAC 1 cut(s) 507
XspI CTAG 1 cut(s) 326
Zsp2I ATGCAT 1 cut(s) 450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.