Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0007685

Physical Location & Seq

Genomic Coordinates Forward (+)

21747559 .. 21748650

Gene Structure 1092 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG232800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGACGCCTTCACCTCCTTCTTCGATTCCCAATCGTCTTCAAGGAACCGCTGGACTTACGAGTCGCTCAAGAATTTCCGTCAGATCTCTCCCATCGTTCAGAACCATCTCAAACTGGTCTACCTCACGCTATGCTGTGCTCTTGTTGGTGCGGCTGCTGGAGCTTACCTGCATCTTATCTGGAACATTGGTGGCCTTTTAACAACTCTTGCCACAGTGGGATGTACTATCTGGTTACTCTCCACCCCTCCCTATGAAGAGGTAGAGTTTTTCATTGTTCTTTCTTTTGCCTCCTACAGTCATGTGTTTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006631 GO:0006950 GO:0006983 GO:0006984 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009607 GO:0009628 GO:0009987 GO:0010035 GO:0010941 GO:0012505 GO:0019752 GO:0023052 GO:0031967 GO:0031975 GO:0032787 GO:0033554 GO:0034976 GO:0042221 GO:0043067 GO:0043069 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060548 GO:0065007 GO:0071216 GO:0071704 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bax1-I

Protein Analysis

104

Amino Acids

11.72

Weight (kDa)

6.23

Isoelectric Point (pI)

42.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0007685)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17010
fragaria_vesca	FvH4_5g20230 FvH4_5g20230
malus_domestica	MD04G1051900.v1.1 MD06G1048200.v1.1
prunus_persica	Prupe.5G058400_v2.0.a1 Prupe.5G058400_v2.0.a1 Prupe.5G058400_v2.0.a1 Prupe.5G058400_v2.0.a1 Prupe.5G058400_v2.0.a1 Prupe.5G058400_v2.0.a1 Prupe.5G058400_v2.0.a1
pyrus_communis	pycom04g04560 pycom06g04120
rosa_chinensis	RchiOBHm_Chr7g0205301
rosa_multiflora	Rmu_sc0001072.1_g000020
rosa_roxburghii	Rroxscaffold_3G00252490
rosa_rugosa	Rorug07G0089600
rosa_samantha	Rh7AG220100 Rh7BG216100 Rh7CG232800 Rh7CG233000 Rh7DG227100
rosa_wichuraiana	Rw7G019030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	61
Acc36I	ACCTGC	1 cut(s)	177
AccI	GTMKAC	1 cut(s)	120
AciI	CCGC	2 cut(s)	49, 152
AcsI	RAATTY	1 cut(s)	73
AcyI	GRCGYC	1 cut(s)	6
AfaI	GTAC	1 cut(s)	226
AgsI	TTSAA	1 cut(s)	42
AluBI	AGCT	1 cut(s)	164
AluI	AGCT	1 cut(s)	164
Alw21I	GWGCWC	1 cut(s)	142
AoxI	GGCC	1 cut(s)	193
ApeKI	GCWGC	1 cut(s)	155
ApoI	RAATTY	1 cut(s)	73
AsuHPI	GGTGA	1 cut(s)	4
BbsI	GAAGAC	1 cut(s)	30
Bbv12I	GWGCWC	1 cut(s)	142
BbvI	GCAGC	1 cut(s)	142
BccI	CCATC	2 cut(s)	101, 114
BfmI	CTRYAG	1 cut(s)	295
BfuAI	ACCTGC	1 cut(s)	177
BglII	AGATCT	1 cut(s)	84
BisI	GCNGC	2 cut(s)	153, 156
BlsI	GCNGC	2 cut(s)	154, 157
BmiI	GGNNCC	1 cut(s)	47
BmsI	GCATC	1 cut(s)	181
BpiI	GAAGAC	1 cut(s)	30
BpmI	CTGGAG	1 cut(s)	180
BpuEI	CTTGAG	1 cut(s)	53
BsaHI	GRCGYC	1 cut(s)	6
Bse1I	ACTGG	1 cut(s)	120
BseGI	GGATG	1 cut(s)	227
BseNI	ACTGG	1 cut(s)	120
BseXI	GCAGC	1 cut(s)	142
BshFI	GGCC	1 cut(s)	195
BsiHKAI	GWGCWC	1 cut(s)	142
BsnI	GGCC	1 cut(s)	195
Bsp1286I	GDGCHC	1 cut(s)	142
Bsp143I	GATC	1 cut(s)	84
BspACI	CCGC	2 cut(s)	49, 152
BspANI	GGCC	1 cut(s)	195
BspLI	GGNNCC	1 cut(s)	47
BspMI	ACCTGC	1 cut(s)	177
BsrI	ACTGG	1 cut(s)	120
BssMI	GATC	1 cut(s)	84
BssNI	GRCGYC	1 cut(s)	6
Bst4CI	ACNGT	2 cut(s)	217, 299
Bst6I	CTCTTC	1 cut(s)	252
BstACI	GRCGYC	1 cut(s)	6
BstF5I	GGATG	1 cut(s)	227
BstKTI	GATC	1 cut(s)	87
BstMBI	GATC	1 cut(s)	84
BstMWI	GCNNNNNNNGC	1 cut(s)	161
BstSFI	CTRYAG	1 cut(s)	295
BstV1I	GCAGC	1 cut(s)	142
BstV2I	GAAGAC	1 cut(s)	30
BstX2I	RGATCY	1 cut(s)	84
BstYI	RGATCY	1 cut(s)	84
BsuRI	GGCC	1 cut(s)	195
BtsCI	GGATG	1 cut(s)	227
BtsIMutI	CAGTG	1 cut(s)	222
BveI	ACCTGC	1 cut(s)	177
CseI	GACGC	1 cut(s)	14
Csp6I	GTAC	1 cut(s)	225
CviAII	CATG	1 cut(s)	302
CviJI	RGCY	3 cut(s)	155, 164, 195
CviKI_1	RGCY	3 cut(s)	155, 164, 195
CviQI	GTAC	1 cut(s)	225
DpnI	GATC	1 cut(s)	86
DpnII	GATC	1 cut(s)	84
DrdI	GACNNNNNNGTC	1 cut(s)	61
DseDI	GACNNNNNNGTC	1 cut(s)	61
Eam1104I	CTCTTC	1 cut(s)	252
EarI	CTCTTC	1 cut(s)	252
FaeI	CATG	1 cut(s)	305
FaiI	YATR	3 cut(s)	133, 255, 303
FatI	CATG	1 cut(s)	301
FblI	GTMKAC	1 cut(s)	120
Fnu4HI	GCNGC	2 cut(s)	153, 156
FokI	GGATG	1 cut(s)	234
Fsp4HI	GCNGC	2 cut(s)	153, 156
GluI	GCNGC	2 cut(s)	153, 156
GsuI	CTGGAG	1 cut(s)	180
HaeIII	GGCC	1 cut(s)	195
HgaI	GACGC	1 cut(s)	14
Hin1I	GRCGYC	1 cut(s)	6
Hin1II	CATG	1 cut(s)	305
HinfI	GANTC	2 cut(s)	26, 62
HphI	GGTGA	1 cut(s)	4
Hpy166II	GTNNAC	1 cut(s)	121
Hpy188I	TCNGA	2 cut(s)	84, 102
Hpy188III	TCNNGA	2 cut(s)	70, 181
Hpy8I	GTNNAC	1 cut(s)	121
HpyAV	CCTTC	2 cut(s)	19, 28
HpyCH4III	ACNGT	2 cut(s)	217, 299
HpyCH4V	TGCA	1 cut(s)	172
HpyF10VI	GCNNNNNNNGC	1 cut(s)	161
Hsp92I	GRCGYC	1 cut(s)	6
Hsp92II	CATG	1 cut(s)	305
Kzo9I	GATC	1 cut(s)	84
LmnI	GCTCC	1 cut(s)	161
LpnPI	CCDG	6 cut(s)	37, 101, 144, 166, 182, 217
Lsp1109I	GCAGC	1 cut(s)	142
LweI	GCATC	1 cut(s)	181
MaeIII	GTNAC	1 cut(s)	234
MalI	GATC	1 cut(s)	86
MboI	GATC	1 cut(s)	84
MboII	GAAGA	3 cut(s)	13, 30, 269
MflI	RGATCY	1 cut(s)	84
MhlI	GDGCHC	1 cut(s)	142
MluCI	AATT	1 cut(s)	73
MlyI	GAGTC	1 cut(s)	71
MnlI	CCTC	5 cut(s)	25, 134, 253, 258, 301
MseI	TTAA	1 cut(s)	200
MspA1I	CMGCKG	1 cut(s)	51
MwoI	GCNNNNNNNGC	1 cut(s)	161
NdeII	GATC	1 cut(s)	84
NlaIII	CATG	1 cut(s)	305
NlaIV	GGNNCC	1 cut(s)	47
PfeI	GAWTC	1 cut(s)	26
PkrI	GCNGC	2 cut(s)	154, 157
PleI	GAGTC	1 cut(s)	70
PpsI	GAGTC	1 cut(s)	70
PspN4I	GGNNCC	1 cut(s)	47
PsuI	RGATCY	1 cut(s)	84
RsaI	GTAC	1 cut(s)	226
RsaNI	GTAC	1 cut(s)	225
SaqAI	TTAA	1 cut(s)	200
SatI	GCNGC	2 cut(s)	153, 156
Sau3AI	GATC	1 cut(s)	84
SchI	GAGTC	1 cut(s)	71
SduI	GDGCHC	1 cut(s)	142
SetI	ASST	5 cut(s)	17, 126, 166, 171, 264
SfaNI	GCATC	1 cut(s)	181
SfcI	CTRYAG	1 cut(s)	295
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
Sse9I	AATT	1 cut(s)	73
SsiI	CCGC	2 cut(s)	49, 152
TaaI	ACNGT	2 cut(s)	217, 299
TaqI	TCGA	1 cut(s)	24
TasI	AATT	1 cut(s)	73
TatI	WGTACW	1 cut(s)	224
TauI	GCSGC	1 cut(s)	155
TfiI	GAWTC	1 cut(s)	26
Tru1I	TTAA	1 cut(s)	200
Tru9I	TTAA	1 cut(s)	200
TscAI	CASTG	1 cut(s)	222
TseI	GCWGC	1 cut(s)	155
TspDTI	ATGAA	2 cut(s)	262, 270
TspGWI	ACGGA	1 cut(s)	68
TspRI	CASTG	1 cut(s)	222
XapI	RAATTY	1 cut(s)	73
XmiI	GTMKAC	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.