Component of the core-TFIIH basal transcription factor involved in nucleotide excision repair (NER) of DNA
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G17020 AT4G17020 AT4G17020 |
| fragaria_vesca | FvH4_3g09430 |
| malus_domestica | MD05G1314300.v1.1 MD10G1295600.v1.1 |
| prunus_persica | Prupe.4G044800_v2.0.a1 Prupe.4G044800_v2.0.a1 Prupe.4G044800_v2.0.a1 Prupe.4G044800_v2.0.a1 Prupe.4G044800_v2.0.a1 Prupe.4G044800_v2.0.a1 Prupe.4G044800_v2.0.a1 Prupe.4G044800_v2.0.a1 |
| pyrus_communis | pycom05g29230 pycom10g24830 |
| rosa_chinensis | RchiOBHm_Chr5g0008121 |
| rosa_laevigata | RLG00000031537 |
| rosa_multiflora | Rmu_sc0001626.1_g000005 |
| rosa_roxburghii | Rroxscaffold_1G00068370 |
| rosa_rugosa | Rorug04G0433400 |
| rosa_samantha | Rh5AG061600 Rh5BG058300 Rh5CG068500 Rh5DG057600 |
| rosa_wichuraiana | Rw5G005900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 464, 1070 |
| Acc36I | ACCTGC | 2 cut(s) | 184, 1344 |
| AccB1I | GGYRCC | 1 cut(s) | 212 |
| AccII | CGCG | 1 cut(s) | 880 |
| AciI | CCGC | 2 cut(s) | 5, 122 |
| AclWI | GGATC | 1 cut(s) | 659 |
| AcsI | RAATTY | 7 cut(s) | 28, 466, 516, 847, 954, 1087, 1208 |
| AcuI | CTGAAG | 2 cut(s) | 314, 898 |
| AcyI | GRCGYC | 1 cut(s) | 47 |
| AdeI | CACNNNGTG | 1 cut(s) | 1103 |
| AfaI | GTAC | 6 cut(s) | 158, 174, 620, 929, 983, 1031 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 111, 615, 1273, 1353 |
| AflII | CTTAAG | 1 cut(s) | 431 |
| AgsI | TTSAA | 5 cut(s) | 251, 643, 752, 800, 1218 |
| AjnI | CCWGG | 1 cut(s) | 1188 |
| AluBI | AGCT | 6 cut(s) | 67, 297, 613, 697, 796, 1238 |
| AluI | AGCT | 6 cut(s) | 67, 297, 613, 697, 796, 1238 |
| Alw21I | GWGCWC | 1 cut(s) | 204 |
| Alw26I | GTCTC | 2 cut(s) | 540, 1154 |
| AlwI | GGATC | 1 cut(s) | 659 |
| Ama87I | CYCGRG | 2 cut(s) | 559, 1251 |
| AoxI | GGCC | 2 cut(s) | 556, 1264 |
| ApeKI | GCWGC | 1 cut(s) | 1235 |
| ApoI | RAATTY | 7 cut(s) | 28, 466, 516, 847, 954, 1087, 1208 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 105 |
| AspLEI | GCGC | 1 cut(s) | 880 |
| AspS9I | GGNCC | 2 cut(s) | 557, 769 |
| AsuHPI | GGTGA | 1 cut(s) | 491 |
| AvaI | CYCGRG | 2 cut(s) | 559, 1251 |
| AvaII | GGWCC | 1 cut(s) | 769 |
| BanI | GGYRCC | 1 cut(s) | 212 |
| BbsI | GAAGAC | 1 cut(s) | 1284 |
| Bbv12I | GWGCWC | 1 cut(s) | 204 |
| BbvI | GCAGC | 1 cut(s) | 1247 |
| BccI | CCATC | 7 cut(s) | 68, 181, 203, 548, 589, 895, 1126 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 407, 441 |
| BciT130I | CCWGG | 1 cut(s) | 1190 |
| BciVI | GTATCC | 1 cut(s) | 592 |
| BclI | TGATCA | 1 cut(s) | 1141 |
| BcoDI | GTCTC | 2 cut(s) | 540, 1154 |
| BfaI | CTAG | 1 cut(s) | 363 |
| BfmI | CTRYAG | 2 cut(s) | 298, 1169 |
| BfrI | CTTAAG | 1 cut(s) | 431 |
| BfuAI | ACCTGC | 2 cut(s) | 184, 1344 |
| BfuI | GTATCC | 1 cut(s) | 592 |
| BglII | AGATCT | 1 cut(s) | 1165 |
| BisI | GCNGC | 3 cut(s) | 5, 122, 1236 |
| BlsI | GCNGC | 3 cut(s) | 6, 123, 1237 |
| Bme1390I | CCNGG | 1 cut(s) | 1190 |
| Bme18I | GGWCC | 1 cut(s) | 769 |
| BmeT110I | CYCGRG | 2 cut(s) | 559, 1251 |
| BmgT120I | GGNCC | 2 cut(s) | 557, 769 |
| BmiI | GGNNCC | 2 cut(s) | 214, 292 |
| BmrFI | CCNGG | 1 cut(s) | 1190 |
| BmsI | GCATC | 3 cut(s) | 504, 1059, 1317 |
| BpiI | GAAGAC | 1 cut(s) | 1284 |
| BpmI | CTGGAG | 1 cut(s) | 1064 |
| BpuEI | CTTGAG | 1 cut(s) | 749 |
| BsaBI | GATNNNNATC | 1 cut(s) | 663 |
| BsaHI | GRCGYC | 1 cut(s) | 47 |
| BsaJI | CCNNGG | 2 cut(s) | 648, 1188 |
| BsaWI | WCCGGW | 1 cut(s) | 347 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 111, 615, 1273, 1353 |
| Bse1I | ACTGG | 3 cut(s) | 496, 718, 843 |
| Bse3DI | GCAATG | 2 cut(s) | 18, 443 |
| Bse8I | GATNNNNATC | 1 cut(s) | 663 |
| BseBI | CCWGG | 1 cut(s) | 1190 |
| BseDI | CCNNGG | 2 cut(s) | 648, 1188 |
| BseGI | GGATG | 2 cut(s) | 503, 1093 |
| BseJI | GATNNNNATC | 1 cut(s) | 663 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 111, 615, 1273, 1353 |
| BseMI | GCAATG | 2 cut(s) | 18, 443 |
| BseMII | CTCAG | 2 cut(s) | 124, 561 |
| BseNI | ACTGG | 3 cut(s) | 496, 718, 843 |
| BseRI | GAGGAG | 2 cut(s) | 206, 665 |
| BseXI | GCAGC | 1 cut(s) | 1247 |
| BseYI | CCCAGC | 1 cut(s) | 609 |
| Bsh1236I | CGCG | 1 cut(s) | 880 |
| BshFI | GGCC | 2 cut(s) | 558, 1266 |
| BshNI | GGYRCC | 1 cut(s) | 212 |
| BsiHKAI | GWGCWC | 1 cut(s) | 204 |
| BsiHKCI | CYCGRG | 2 cut(s) | 559, 1251 |
| BsiSI | CCGG | 1 cut(s) | 348 |
| BslFI | GGGAC | 1 cut(s) | 1100 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 111, 615, 1273, 1353 |
| BsmAI | GTCTC | 2 cut(s) | 540, 1154 |
| BsmFI | GGGAC | 1 cut(s) | 1100 |
| BsmI | GAATGC | 2 cut(s) | 649, 1296 |
| BsnI | GGCC | 2 cut(s) | 558, 1266 |
| BsoBI | CYCGRG | 2 cut(s) | 559, 1251 |
| Bsp1286I | GDGCHC | 1 cut(s) | 204 |
| Bsp1407I | TGTACA | 2 cut(s) | 156, 1029 |
| Bsp143I | GATC | 7 cut(s) | 15, 238, 664, 1060, 1108, 1141, 1165 |
| BspACI | CCGC | 2 cut(s) | 5, 122 |
| BspANI | GGCC | 2 cut(s) | 558, 1266 |
| BspCNI | CTCAG | 2 cut(s) | 123, 562 |
| BspFNI | CGCG | 1 cut(s) | 880 |
| BspLI | GGNNCC | 2 cut(s) | 214, 292 |
| BspMAI | CTGCAG | 1 cut(s) | 1173 |
| BspMI | ACCTGC | 2 cut(s) | 184, 1344 |
| BspPI | GGATC | 1 cut(s) | 659 |
| BspT107I | GGYRCC | 1 cut(s) | 212 |
| BspTI | CTTAAG | 1 cut(s) | 431 |
| BsrDI | GCAATG | 2 cut(s) | 18, 443 |
| BsrGI | TGTACA | 2 cut(s) | 156, 1029 |
| BsrI | ACTGG | 3 cut(s) | 496, 718, 843 |
| BssECI | CCNNGG | 2 cut(s) | 648, 1188 |
| BssMI | GATC | 7 cut(s) | 15, 238, 664, 1060, 1108, 1141, 1165 |
| BssNI | GRCGYC | 1 cut(s) | 47 |
| Bst2UI | CCWGG | 1 cut(s) | 1190 |
| Bst4CI | ACNGT | 2 cut(s) | 818, 948 |
| BstACI | GRCGYC | 1 cut(s) | 47 |
| BstAFI | CTTAAG | 1 cut(s) | 431 |
| BstAUI | TGTACA | 2 cut(s) | 156, 1029 |
| BstC8I | GCNNGC | 1 cut(s) | 204 |
| BstDEI | CTNAG | 5 cut(s) | 110, 570, 698, 939, 1284 |
| BstF5I | GGATG | 2 cut(s) | 503, 1093 |
| BstFNI | CGCG | 1 cut(s) | 880 |
| BstHHI | GCGC | 1 cut(s) | 880 |
| BstKTI | GATC | 7 cut(s) | 18, 241, 667, 1063, 1111, 1144, 1168 |
| BstMAI | GTCTC | 2 cut(s) | 540, 1154 |
| BstMBI | GATC | 7 cut(s) | 15, 238, 664, 1060, 1108, 1141, 1165 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 367 |
| BstNI | CCWGG | 1 cut(s) | 1190 |
| BstSCI | CCNGG | 1 cut(s) | 1188 |
| BstSFI | CTRYAG | 2 cut(s) | 298, 1169 |
| BstUI | CGCG | 1 cut(s) | 880 |
| BstV1I | GCAGC | 1 cut(s) | 1247 |
| BstV2I | GAAGAC | 1 cut(s) | 1284 |
| BstX2I | RGATCY | 2 cut(s) | 664, 1165 |
| BstYI | RGATCY | 2 cut(s) | 664, 1165 |
| BsuI | GTATCC | 1 cut(s) | 592 |
| BsuRI | GGCC | 2 cut(s) | 558, 1266 |
| BtsCI | GGATG | 2 cut(s) | 503, 1093 |
| BtsIMutI | CAGTG | 2 cut(s) | 953, 1137 |
| BveI | ACCTGC | 2 cut(s) | 184, 1344 |
| Cac8I | GCNNGC | 1 cut(s) | 204 |
| CfoI | GCGC | 1 cut(s) | 880 |
| Cfr13I | GGNCC | 2 cut(s) | 557, 769 |
| CseI | GACGC | 1 cut(s) | 36 |
| Csp6I | GTAC | 6 cut(s) | 157, 173, 619, 928, 982, 1030 |
| CviAII | CATG | 4 cut(s) | 34, 40, 508, 707 |
| CviQI | GTAC | 6 cut(s) | 157, 173, 619, 928, 982, 1030 |
| DdeI | CTNAG | 5 cut(s) | 110, 570, 698, 939, 1284 |
| DpnI | GATC | 7 cut(s) | 17, 240, 666, 1062, 1110, 1143, 1167 |
| DpnII | GATC | 7 cut(s) | 15, 238, 664, 1060, 1108, 1141, 1165 |
| DraIII | CACNNNGTG | 1 cut(s) | 1103 |
| Eco147I | AGGCCT | 1 cut(s) | 1266 |
| Eco47I | GGWCC | 1 cut(s) | 769 |
| Eco57I | CTGAAG | 2 cut(s) | 314, 898 |
| Eco88I | CYCGRG | 2 cut(s) | 559, 1251 |
| EcoO109I | RGGNCCY | 1 cut(s) | 769 |
| EcoRI | GAATTC | 1 cut(s) | 1087 |
| EcoRII | CCWGG | 1 cut(s) | 1188 |
| EcoT22I | ATGCAT | 1 cut(s) | 1039 |
| FaeI | CATG | 4 cut(s) | 37, 43, 511, 710 |
| FaqI | GGGAC | 1 cut(s) | 1100 |
| FatI | CATG | 4 cut(s) | 33, 39, 507, 706 |
| FbaI | TGATCA | 1 cut(s) | 1141 |
| Fnu4HI | GCNGC | 3 cut(s) | 5, 122, 1236 |
| FokI | GGATG | 2 cut(s) | 490, 1080 |
| Fsp4HI | GCNGC | 3 cut(s) | 5, 122, 1236 |
| FspBI | CTAG | 1 cut(s) | 363 |
| GlaI | GCGC | 1 cut(s) | 879 |
| GluI | GCNGC | 3 cut(s) | 5, 122, 1236 |
| GsaI | CCCAGC | 1 cut(s) | 613 |
| GsuI | CTGGAG | 1 cut(s) | 1064 |
| HaeIII | GGCC | 2 cut(s) | 558, 1266 |
| HapII | CCGG | 1 cut(s) | 348 |
| HgaI | GACGC | 1 cut(s) | 36 |
| HhaI | GCGC | 1 cut(s) | 880 |
| Hin1I | GRCGYC | 1 cut(s) | 47 |
| Hin1II | CATG | 4 cut(s) | 37, 43, 511, 710 |
| Hin6I | GCGC | 1 cut(s) | 878 |
| HinP1I | GCGC | 1 cut(s) | 878 |
| HindIII | AAGCTT | 2 cut(s) | 65, 794 |
| HinfI | GANTC | 6 cut(s) | 247, 538, 869, 1113, 1147, 1280 |
| HpaII | CCGG | 1 cut(s) | 348 |
| HphI | GGTGA | 1 cut(s) | 491 |
| Hpy166II | GTNNAC | 1 cut(s) | 1318 |
| Hpy188III | TCNNGA | 4 cut(s) | 629, 898, 1127, 1253 |
| Hpy8I | GTNNAC | 1 cut(s) | 1318 |
| HpyAV | CCTTC | 3 cut(s) | 801, 1224, 1277 |
| HpyCH4III | ACNGT | 2 cut(s) | 818, 948 |
| HpyCH4V | TGCA | 5 cut(s) | 148, 428, 776, 1037, 1171 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 367 |
| HpyF3I | CTNAG | 5 cut(s) | 110, 570, 698, 939, 1284 |
| Hsp92I | GRCGYC | 1 cut(s) | 47 |
| Hsp92II | CATG | 4 cut(s) | 37, 43, 511, 710 |
| HspAI | GCGC | 1 cut(s) | 878 |
| Ksp22I | TGATCA | 1 cut(s) | 1141 |
| Kzo9I | GATC | 7 cut(s) | 15, 238, 664, 1060, 1108, 1141, 1165 |
| LmnI | GCTCC | 2 cut(s) | 652, 694 |
| Lsp1109I | GCAGC | 1 cut(s) | 1247 |
| LweI | GCATC | 3 cut(s) | 504, 1059, 1317 |
| MaeI | CTAG | 1 cut(s) | 363 |
| MaeIII | GTNAC | 5 cut(s) | 48, 709, 942, 1135, 1241 |
| MalI | GATC | 7 cut(s) | 17, 240, 666, 1062, 1110, 1143, 1167 |
| MboI | GATC | 7 cut(s) | 15, 238, 664, 1060, 1108, 1141, 1165 |
| MboII | GAAGA | 3 cut(s) | 320, 1289, 1331 |
| MflI | RGATCY | 2 cut(s) | 664, 1165 |
| MhlI | GDGCHC | 1 cut(s) | 204 |
| MlyI | GAGTC | 3 cut(s) | 547, 1122, 1274 |
| MmeI | TCCRAC | 2 cut(s) | 405, 672 |
| Mph1103I | ATGCAT | 1 cut(s) | 1039 |
| MroXI | GAANNNNTTC | 1 cut(s) | 105 |
| MseI | TTAA | 6 cut(s) | 12, 254, 393, 432, 566, 731 |
| MslI | CAYNNNNRTG | 2 cut(s) | 38, 1200 |
| MspCI | CTTAAG | 1 cut(s) | 431 |
| MspI | CCGG | 1 cut(s) | 348 |
| MspR9I | CCNGG | 1 cut(s) | 1190 |
| Mva1269I | GAATGC | 2 cut(s) | 649, 1296 |
| MvaI | CCWGG | 1 cut(s) | 1190 |
| MvnI | CGCG | 1 cut(s) | 880 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 367 |
| NdeII | GATC | 7 cut(s) | 15, 238, 664, 1060, 1108, 1141, 1165 |
| NlaIII | CATG | 4 cut(s) | 37, 43, 511, 710 |
| NlaIV | GGNNCC | 2 cut(s) | 214, 292 |
| NmeAIII | GCCGAG | 1 cut(s) | 673 |
| NmuCI | GTSAC | 3 cut(s) | 48, 1135, 1241 |
| NsiI | ATGCAT | 1 cut(s) | 1039 |
| PceI | AGGCCT | 1 cut(s) | 1266 |
| PctI | GAATGC | 2 cut(s) | 649, 1296 |
| PdmI | GAANNNNTTC | 1 cut(s) | 105 |
| PfeI | GAWTC | 3 cut(s) | 247, 869, 1147 |
| PkrI | GCNGC | 3 cut(s) | 6, 123, 1237 |
| PleI | GAGTC | 3 cut(s) | 546, 1121, 1274 |
| PpsI | GAGTC | 3 cut(s) | 546, 1121, 1274 |
| PpuMI | RGGWCCY | 1 cut(s) | 769 |
| PsiI | TTATAA | 2 cut(s) | 464, 1070 |
| Psp5II | RGGWCCY | 1 cut(s) | 769 |
| Psp6I | CCWGG | 1 cut(s) | 1188 |
| PspFI | CCCAGC | 1 cut(s) | 609 |
| PspGI | CCWGG | 1 cut(s) | 1188 |
| PspN4I | GGNNCC | 2 cut(s) | 214, 292 |
| PspPI | GGNCC | 2 cut(s) | 557, 769 |
| PspPPI | RGGWCCY | 1 cut(s) | 769 |
| PstI | CTGCAG | 1 cut(s) | 1173 |
| PsuI | RGATCY | 2 cut(s) | 664, 1165 |
| RsaI | GTAC | 6 cut(s) | 158, 174, 620, 929, 983, 1031 |
| RsaNI | GTAC | 6 cut(s) | 157, 173, 619, 928, 982, 1030 |
| RseI | CAYNNNNRTG | 2 cut(s) | 38, 1200 |
| SaqAI | TTAA | 6 cut(s) | 12, 254, 393, 432, 566, 731 |
| SatI | GCNGC | 3 cut(s) | 5, 122, 1236 |
| Sau3AI | GATC | 7 cut(s) | 15, 238, 664, 1060, 1108, 1141, 1165 |
| Sau96I | GGNCC | 2 cut(s) | 557, 769 |
| SchI | GAGTC | 3 cut(s) | 547, 1122, 1274 |
| ScrFI | CCNGG | 1 cut(s) | 1190 |
| SduI | GDGCHC | 1 cut(s) | 204 |
| SfaNI | GCATC | 3 cut(s) | 504, 1059, 1317 |
| SfcI | CTRYAG | 2 cut(s) | 298, 1169 |
| SinI | GGWCC | 1 cut(s) | 769 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 38, 1200 |
| SmlI | CTYRAG | 2 cut(s) | 431, 764 |
| SmoI | CTYRAG | 2 cut(s) | 431, 764 |
| SseBI | AGGCCT | 1 cut(s) | 1266 |
| SsiI | CCGC | 2 cut(s) | 5, 122 |
| SspMI | CTAG | 1 cut(s) | 363 |
| StuI | AGGCCT | 1 cut(s) | 1266 |
| StyD4I | CCNGG | 1 cut(s) | 1188 |
| TaaI | ACNGT | 2 cut(s) | 818, 948 |
| TaqI | TCGA | 4 cut(s) | 241, 417, 628, 1111 |
| TatI | WGTACW | 2 cut(s) | 156, 1029 |
| TauI | GCSGC | 2 cut(s) | 7, 124 |
| TfiI | GAWTC | 3 cut(s) | 247, 869, 1147 |
| Tru1I | TTAA | 6 cut(s) | 12, 254, 393, 432, 566, 731 |
| Tru9I | TTAA | 6 cut(s) | 12, 254, 393, 432, 566, 731 |
| TscAI | CASTG | 2 cut(s) | 953, 1144 |
| TseFI | GTSAC | 3 cut(s) | 48, 1135, 1241 |
| TseI | GCWGC | 1 cut(s) | 1235 |
| Tsp45I | GTSAC | 3 cut(s) | 48, 1135, 1241 |
| TspDTI | ATGAA | 8 cut(s) | 22, 389, 492, 527, 695, 861, 1221, 1331 |
| TspRI | CASTG | 2 cut(s) | 953, 1144 |
| Vha464I | CTTAAG | 1 cut(s) | 431 |
| VpaK11BI | GGWCC | 1 cut(s) | 769 |
| XapI | RAATTY | 7 cut(s) | 28, 466, 516, 847, 954, 1087, 1208 |
| XmnI | GAANNNNTTC | 1 cut(s) | 105 |
| XspI | CTAG | 1 cut(s) | 363 |
| Zsp2I | ATGCAT | 1 cut(s) | 1039 |