AT4G17020

Component of the core-TFIIH basal transcription factor involved in nucleotide excision repair (NER) of DNA

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Reverse (-)
9577776 .. 9581439
3664 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G17020.2

Sequence Viewer

Length: 1359 bp
ATGCCGCAAGTTAAGATCATTGCTAAAAATTTCATGGACATGGTGGCGTCACTTCCAGCCATCAAGCTTGACAAACTCTACAACAATGTCTTTATCTGCGAAGCCATTCTCAGGTCTTTGCCGCCTCTTGCCAAGAAGTATGTATTGCAGATGTTGTACATTGATGTTCCTGTACCTGCTACGATGATGGAGGAGTGGGTGCTCGCAGATGGCACCTCTAAACATAGAGTTGCTATTGATCGACTGATTCAATTAAGGATTTTTTCAGAAATTAGTGATAGGAAAAGGGGAACCAGCTACAGCCTAAATCCTACATTTCAGAACAATCTTCAGAAACATATTATTTCCGGTGGAGTTTTGCCTAGAGAGCCTATGAACTCCGACAATGCCATTAAACTTCCAAGCCTACAAGAACTCGAAACCTATGCACTTAAGCAATGGGAGTGTTTCTTGCTACAACTTATAAATTCGGGTCAAGGTGAAAAACTAACTGGCATCAGTTCATCCATGATGAAAATTTTTCAGCGAGGTTTATTGAGTCAGAGAGACAAAGATGGCCCGAGATTAACTGAGAGTGGCTTTCAGTTTTTGCTGATGGATACAAATGCCCAGCTTTGGTACATTATTCGAGAATACATATTGAATGCCGAGGAGCGAGATGTAGATCCAGCAGACTTGATTTCGTTTTTGTTGGAGCTTAGTTTTCATGTTACTGGTCAGGCATATAACTTAAATACCTTGACAGAGGTTCAAAACAATACCCTCAAGGACCTTGCAGACTTGGGATTAGTCAAGCTTCAACAGGGAAGGAAAGACAGTTGGTTTATTCCTACTAAACTGGCTACAAATTTATCAGTCAGTCTGGCAGATTCATCAGCGCGAAAAGAGGGATTTGTCGTGATGGAAACAAACTTCAGAATGTATGCGTACTCCACATCTAAGTTACAGTGTGAAATTTTACGACTATTTGCGAGGATAGAGTACCAACTTCCAAACCTTATTGCTTGTGCCATTACAAAGGAAAGTTTGTACAATGCATTTGACAATGGCATCACATCAGATCAGATTATAACTTTCCTCCAGCAGAATTCTCATCCACGATGTGCTGATCGAGTCCCATCTATTCCAGAAAATGTCACTGATCAGATTCGGCTTTGGGAGACAGATCTGCAGAGAATTGAGATGACCCAGGCTCACTTCTATGATGAATTTCCTTCAAAAGATGTGTTTGAGGCAGCTTGTGACTTTGCTCGGGAATGGAGAGGCCTTCTTTGGGAAGACTCTAAGAGAATGCGACTTGTTGTGAAATCCGAAGTTCACAATCAGATGCGTGAGTTTCTTCATACCCAAAGCAGGTAA

Protein Analysis

452

Amino Acids

52.07

Weight (kDa)

6.06

Isoelectric Point (pI)

40.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tfb2 PF03849 14 - 366 4e-113 Transcription factor Tfb2
Tfb2_C PF18307 381 - 447 1.6e-22 Transcription factor Tfb2 (p52) C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 464, 1070
Acc36I ACCTGC 2 cut(s) 184, 1344
AccB1I GGYRCC 1 cut(s) 212
AccII CGCG 1 cut(s) 880
AciI CCGC 2 cut(s) 5, 122
AclWI GGATC 1 cut(s) 659
AcsI RAATTY 7 cut(s) 28, 466, 516, 847, 954, 1087, 1208
AcuI CTGAAG 2 cut(s) 314, 898
AcyI GRCGYC 1 cut(s) 47
AdeI CACNNNGTG 1 cut(s) 1103
AfaI GTAC 6 cut(s) 158, 174, 620, 929, 983, 1031
AfiI CCNNNNNNNGG 4 cut(s) 111, 615, 1273, 1353
AflII CTTAAG 1 cut(s) 431
AgsI TTSAA 5 cut(s) 251, 643, 752, 800, 1218
AjnI CCWGG 1 cut(s) 1188
AluBI AGCT 6 cut(s) 67, 297, 613, 697, 796, 1238
AluI AGCT 6 cut(s) 67, 297, 613, 697, 796, 1238
Alw21I GWGCWC 1 cut(s) 204
Alw26I GTCTC 2 cut(s) 540, 1154
AlwI GGATC 1 cut(s) 659
Ama87I CYCGRG 2 cut(s) 559, 1251
AoxI GGCC 2 cut(s) 556, 1264
ApeKI GCWGC 1 cut(s) 1235
ApoI RAATTY 7 cut(s) 28, 466, 516, 847, 954, 1087, 1208
Asp700I GAANNNNTTC 1 cut(s) 105
AspLEI GCGC 1 cut(s) 880
AspS9I GGNCC 2 cut(s) 557, 769
AsuHPI GGTGA 1 cut(s) 491
AvaI CYCGRG 2 cut(s) 559, 1251
AvaII GGWCC 1 cut(s) 769
BanI GGYRCC 1 cut(s) 212
BbsI GAAGAC 1 cut(s) 1284
Bbv12I GWGCWC 1 cut(s) 204
BbvI GCAGC 1 cut(s) 1247
BccI CCATC 7 cut(s) 68, 181, 203, 548, 589, 895, 1126
BcgI CGANNNNNNTGC 2 cut(s) 407, 441
BciT130I CCWGG 1 cut(s) 1190
BciVI GTATCC 1 cut(s) 592
BclI TGATCA 1 cut(s) 1141
BcoDI GTCTC 2 cut(s) 540, 1154
BfaI CTAG 1 cut(s) 363
BfmI CTRYAG 2 cut(s) 298, 1169
BfrI CTTAAG 1 cut(s) 431
BfuAI ACCTGC 2 cut(s) 184, 1344
BfuI GTATCC 1 cut(s) 592
BglII AGATCT 1 cut(s) 1165
BisI GCNGC 3 cut(s) 5, 122, 1236
BlsI GCNGC 3 cut(s) 6, 123, 1237
Bme1390I CCNGG 1 cut(s) 1190
Bme18I GGWCC 1 cut(s) 769
BmeT110I CYCGRG 2 cut(s) 559, 1251
BmgT120I GGNCC 2 cut(s) 557, 769
BmiI GGNNCC 2 cut(s) 214, 292
BmrFI CCNGG 1 cut(s) 1190
BmsI GCATC 3 cut(s) 504, 1059, 1317
BpiI GAAGAC 1 cut(s) 1284
BpmI CTGGAG 1 cut(s) 1064
BpuEI CTTGAG 1 cut(s) 749
BsaBI GATNNNNATC 1 cut(s) 663
BsaHI GRCGYC 1 cut(s) 47
BsaJI CCNNGG 2 cut(s) 648, 1188
BsaWI WCCGGW 1 cut(s) 347
Bsc4I CCNNNNNNNGG 4 cut(s) 111, 615, 1273, 1353
Bse1I ACTGG 3 cut(s) 496, 718, 843
Bse3DI GCAATG 2 cut(s) 18, 443
Bse8I GATNNNNATC 1 cut(s) 663
BseBI CCWGG 1 cut(s) 1190
BseDI CCNNGG 2 cut(s) 648, 1188
BseGI GGATG 2 cut(s) 503, 1093
BseJI GATNNNNATC 1 cut(s) 663
BseLI CCNNNNNNNGG 4 cut(s) 111, 615, 1273, 1353
BseMI GCAATG 2 cut(s) 18, 443
BseMII CTCAG 2 cut(s) 124, 561
BseNI ACTGG 3 cut(s) 496, 718, 843
BseRI GAGGAG 2 cut(s) 206, 665
BseXI GCAGC 1 cut(s) 1247
BseYI CCCAGC 1 cut(s) 609
Bsh1236I CGCG 1 cut(s) 880
BshFI GGCC 2 cut(s) 558, 1266
BshNI GGYRCC 1 cut(s) 212
BsiHKAI GWGCWC 1 cut(s) 204
BsiHKCI CYCGRG 2 cut(s) 559, 1251
BsiSI CCGG 1 cut(s) 348
BslFI GGGAC 1 cut(s) 1100
BslI CCNNNNNNNGG 4 cut(s) 111, 615, 1273, 1353
BsmAI GTCTC 2 cut(s) 540, 1154
BsmFI GGGAC 1 cut(s) 1100
BsmI GAATGC 2 cut(s) 649, 1296
BsnI GGCC 2 cut(s) 558, 1266
BsoBI CYCGRG 2 cut(s) 559, 1251
Bsp1286I GDGCHC 1 cut(s) 204
Bsp1407I TGTACA 2 cut(s) 156, 1029
Bsp143I GATC 7 cut(s) 15, 238, 664, 1060, 1108, 1141, 1165
BspACI CCGC 2 cut(s) 5, 122
BspANI GGCC 2 cut(s) 558, 1266
BspCNI CTCAG 2 cut(s) 123, 562
BspFNI CGCG 1 cut(s) 880
BspLI GGNNCC 2 cut(s) 214, 292
BspMAI CTGCAG 1 cut(s) 1173
BspMI ACCTGC 2 cut(s) 184, 1344
BspPI GGATC 1 cut(s) 659
BspT107I GGYRCC 1 cut(s) 212
BspTI CTTAAG 1 cut(s) 431
BsrDI GCAATG 2 cut(s) 18, 443
BsrGI TGTACA 2 cut(s) 156, 1029
BsrI ACTGG 3 cut(s) 496, 718, 843
BssECI CCNNGG 2 cut(s) 648, 1188
BssMI GATC 7 cut(s) 15, 238, 664, 1060, 1108, 1141, 1165
BssNI GRCGYC 1 cut(s) 47
Bst2UI CCWGG 1 cut(s) 1190
Bst4CI ACNGT 2 cut(s) 818, 948
BstACI GRCGYC 1 cut(s) 47
BstAFI CTTAAG 1 cut(s) 431
BstAUI TGTACA 2 cut(s) 156, 1029
BstC8I GCNNGC 1 cut(s) 204
BstDEI CTNAG 5 cut(s) 110, 570, 698, 939, 1284
BstF5I GGATG 2 cut(s) 503, 1093
BstFNI CGCG 1 cut(s) 880
BstHHI GCGC 1 cut(s) 880
BstKTI GATC 7 cut(s) 18, 241, 667, 1063, 1111, 1144, 1168
BstMAI GTCTC 2 cut(s) 540, 1154
BstMBI GATC 7 cut(s) 15, 238, 664, 1060, 1108, 1141, 1165
BstMWI GCNNNNNNNGC 1 cut(s) 367
BstNI CCWGG 1 cut(s) 1190
BstSCI CCNGG 1 cut(s) 1188
BstSFI CTRYAG 2 cut(s) 298, 1169
BstUI CGCG 1 cut(s) 880
BstV1I GCAGC 1 cut(s) 1247
BstV2I GAAGAC 1 cut(s) 1284
BstX2I RGATCY 2 cut(s) 664, 1165
BstYI RGATCY 2 cut(s) 664, 1165
BsuI GTATCC 1 cut(s) 592
BsuRI GGCC 2 cut(s) 558, 1266
BtsCI GGATG 2 cut(s) 503, 1093
BtsIMutI CAGTG 2 cut(s) 953, 1137
BveI ACCTGC 2 cut(s) 184, 1344
Cac8I GCNNGC 1 cut(s) 204
CfoI GCGC 1 cut(s) 880
Cfr13I GGNCC 2 cut(s) 557, 769
CseI GACGC 1 cut(s) 36
Csp6I GTAC 6 cut(s) 157, 173, 619, 928, 982, 1030
CviAII CATG 4 cut(s) 34, 40, 508, 707
CviQI GTAC 6 cut(s) 157, 173, 619, 928, 982, 1030
DdeI CTNAG 5 cut(s) 110, 570, 698, 939, 1284
DpnI GATC 7 cut(s) 17, 240, 666, 1062, 1110, 1143, 1167
DpnII GATC 7 cut(s) 15, 238, 664, 1060, 1108, 1141, 1165
DraIII CACNNNGTG 1 cut(s) 1103
Eco147I AGGCCT 1 cut(s) 1266
Eco47I GGWCC 1 cut(s) 769
Eco57I CTGAAG 2 cut(s) 314, 898
Eco88I CYCGRG 2 cut(s) 559, 1251
EcoO109I RGGNCCY 1 cut(s) 769
EcoRI GAATTC 1 cut(s) 1087
EcoRII CCWGG 1 cut(s) 1188
EcoT22I ATGCAT 1 cut(s) 1039
FaeI CATG 4 cut(s) 37, 43, 511, 710
FaqI GGGAC 1 cut(s) 1100
FatI CATG 4 cut(s) 33, 39, 507, 706
FbaI TGATCA 1 cut(s) 1141
Fnu4HI GCNGC 3 cut(s) 5, 122, 1236
FokI GGATG 2 cut(s) 490, 1080
Fsp4HI GCNGC 3 cut(s) 5, 122, 1236
FspBI CTAG 1 cut(s) 363
GlaI GCGC 1 cut(s) 879
GluI GCNGC 3 cut(s) 5, 122, 1236
GsaI CCCAGC 1 cut(s) 613
GsuI CTGGAG 1 cut(s) 1064
HaeIII GGCC 2 cut(s) 558, 1266
HapII CCGG 1 cut(s) 348
HgaI GACGC 1 cut(s) 36
HhaI GCGC 1 cut(s) 880
Hin1I GRCGYC 1 cut(s) 47
Hin1II CATG 4 cut(s) 37, 43, 511, 710
Hin6I GCGC 1 cut(s) 878
HinP1I GCGC 1 cut(s) 878
HindIII AAGCTT 2 cut(s) 65, 794
HinfI GANTC 6 cut(s) 247, 538, 869, 1113, 1147, 1280
HpaII CCGG 1 cut(s) 348
HphI GGTGA 1 cut(s) 491
Hpy166II GTNNAC 1 cut(s) 1318
Hpy188III TCNNGA 4 cut(s) 629, 898, 1127, 1253
Hpy8I GTNNAC 1 cut(s) 1318
HpyAV CCTTC 3 cut(s) 801, 1224, 1277
HpyCH4III ACNGT 2 cut(s) 818, 948
HpyCH4V TGCA 5 cut(s) 148, 428, 776, 1037, 1171
HpyF10VI GCNNNNNNNGC 1 cut(s) 367
HpyF3I CTNAG 5 cut(s) 110, 570, 698, 939, 1284
Hsp92I GRCGYC 1 cut(s) 47
Hsp92II CATG 4 cut(s) 37, 43, 511, 710
HspAI GCGC 1 cut(s) 878
Ksp22I TGATCA 1 cut(s) 1141
Kzo9I GATC 7 cut(s) 15, 238, 664, 1060, 1108, 1141, 1165
LmnI GCTCC 2 cut(s) 652, 694
Lsp1109I GCAGC 1 cut(s) 1247
LweI GCATC 3 cut(s) 504, 1059, 1317
MaeI CTAG 1 cut(s) 363
MaeIII GTNAC 5 cut(s) 48, 709, 942, 1135, 1241
MalI GATC 7 cut(s) 17, 240, 666, 1062, 1110, 1143, 1167
MboI GATC 7 cut(s) 15, 238, 664, 1060, 1108, 1141, 1165
MboII GAAGA 3 cut(s) 320, 1289, 1331
MflI RGATCY 2 cut(s) 664, 1165
MhlI GDGCHC 1 cut(s) 204
MlyI GAGTC 3 cut(s) 547, 1122, 1274
MmeI TCCRAC 2 cut(s) 405, 672
Mph1103I ATGCAT 1 cut(s) 1039
MroXI GAANNNNTTC 1 cut(s) 105
MseI TTAA 6 cut(s) 12, 254, 393, 432, 566, 731
MslI CAYNNNNRTG 2 cut(s) 38, 1200
MspCI CTTAAG 1 cut(s) 431
MspI CCGG 1 cut(s) 348
MspR9I CCNGG 1 cut(s) 1190
Mva1269I GAATGC 2 cut(s) 649, 1296
MvaI CCWGG 1 cut(s) 1190
MvnI CGCG 1 cut(s) 880
MwoI GCNNNNNNNGC 1 cut(s) 367
NdeII GATC 7 cut(s) 15, 238, 664, 1060, 1108, 1141, 1165
NlaIII CATG 4 cut(s) 37, 43, 511, 710
NlaIV GGNNCC 2 cut(s) 214, 292
NmeAIII GCCGAG 1 cut(s) 673
NmuCI GTSAC 3 cut(s) 48, 1135, 1241
NsiI ATGCAT 1 cut(s) 1039
PceI AGGCCT 1 cut(s) 1266
PctI GAATGC 2 cut(s) 649, 1296
PdmI GAANNNNTTC 1 cut(s) 105
PfeI GAWTC 3 cut(s) 247, 869, 1147
PkrI GCNGC 3 cut(s) 6, 123, 1237
PleI GAGTC 3 cut(s) 546, 1121, 1274
PpsI GAGTC 3 cut(s) 546, 1121, 1274
PpuMI RGGWCCY 1 cut(s) 769
PsiI TTATAA 2 cut(s) 464, 1070
Psp5II RGGWCCY 1 cut(s) 769
Psp6I CCWGG 1 cut(s) 1188
PspFI CCCAGC 1 cut(s) 609
PspGI CCWGG 1 cut(s) 1188
PspN4I GGNNCC 2 cut(s) 214, 292
PspPI GGNCC 2 cut(s) 557, 769
PspPPI RGGWCCY 1 cut(s) 769
PstI CTGCAG 1 cut(s) 1173
PsuI RGATCY 2 cut(s) 664, 1165
RsaI GTAC 6 cut(s) 158, 174, 620, 929, 983, 1031
RsaNI GTAC 6 cut(s) 157, 173, 619, 928, 982, 1030
RseI CAYNNNNRTG 2 cut(s) 38, 1200
SaqAI TTAA 6 cut(s) 12, 254, 393, 432, 566, 731
SatI GCNGC 3 cut(s) 5, 122, 1236
Sau3AI GATC 7 cut(s) 15, 238, 664, 1060, 1108, 1141, 1165
Sau96I GGNCC 2 cut(s) 557, 769
SchI GAGTC 3 cut(s) 547, 1122, 1274
ScrFI CCNGG 1 cut(s) 1190
SduI GDGCHC 1 cut(s) 204
SfaNI GCATC 3 cut(s) 504, 1059, 1317
SfcI CTRYAG 2 cut(s) 298, 1169
SinI GGWCC 1 cut(s) 769
SmiMI CAYNNNNRTG 2 cut(s) 38, 1200
SmlI CTYRAG 2 cut(s) 431, 764
SmoI CTYRAG 2 cut(s) 431, 764
SseBI AGGCCT 1 cut(s) 1266
SsiI CCGC 2 cut(s) 5, 122
SspMI CTAG 1 cut(s) 363
StuI AGGCCT 1 cut(s) 1266
StyD4I CCNGG 1 cut(s) 1188
TaaI ACNGT 2 cut(s) 818, 948
TaqI TCGA 4 cut(s) 241, 417, 628, 1111
TatI WGTACW 2 cut(s) 156, 1029
TauI GCSGC 2 cut(s) 7, 124
TfiI GAWTC 3 cut(s) 247, 869, 1147
Tru1I TTAA 6 cut(s) 12, 254, 393, 432, 566, 731
Tru9I TTAA 6 cut(s) 12, 254, 393, 432, 566, 731
TscAI CASTG 2 cut(s) 953, 1144
TseFI GTSAC 3 cut(s) 48, 1135, 1241
TseI GCWGC 1 cut(s) 1235
Tsp45I GTSAC 3 cut(s) 48, 1135, 1241
TspDTI ATGAA 8 cut(s) 22, 389, 492, 527, 695, 861, 1221, 1331
TspRI CASTG 2 cut(s) 953, 1144
Vha464I CTTAAG 1 cut(s) 431
VpaK11BI GGWCC 1 cut(s) 769
XapI RAATTY 7 cut(s) 28, 466, 516, 847, 954, 1087, 1208
XmnI GAANNNNTTC 1 cut(s) 105
XspI CTAG 1 cut(s) 363
Zsp2I ATGCAT 1 cut(s) 1039
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.