Component of the core-TFIIH basal transcription factor involved in nucleotide excision repair (NER) of DNA
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G17020 AT4G17020 AT4G17020 |
| fragaria_vesca | FvH4_3g09430 |
| malus_domestica | MD05G1314300.v1.1 MD10G1295600.v1.1 |
| prunus_persica | Prupe.4G044800_v2.0.a1 Prupe.4G044800_v2.0.a1 Prupe.4G044800_v2.0.a1 Prupe.4G044800_v2.0.a1 Prupe.4G044800_v2.0.a1 Prupe.4G044800_v2.0.a1 Prupe.4G044800_v2.0.a1 Prupe.4G044800_v2.0.a1 |
| pyrus_communis | pycom05g29230 pycom10g24830 |
| rosa_chinensis | RchiOBHm_Chr5g0008121 |
| rosa_laevigata | RLG00000031537 |
| rosa_multiflora | Rmu_sc0001626.1_g000005 |
| rosa_roxburghii | Rroxscaffold_1G00068370 |
| rosa_rugosa | Rorug04G0433400 |
| rosa_samantha | Rh5AG061600 Rh5BG058300 Rh5CG068500 Rh5DG057600 |
| rosa_wichuraiana | Rw5G005900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 181 |
| Acc16I | TGCGCA | 1 cut(s) | 609 |
| AciI | CCGC | 2 cut(s) | 57, 125 |
| AclWI | GGATC | 6 cut(s) | 23, 420, 777, 1230, 1274, 1287 |
| AcsI | RAATTY | 4 cut(s) | 28, 258, 516, 954 |
| AcuI | CTGAAG | 3 cut(s) | 782, 898, 1064 |
| AcvI | CACGTG | 2 cut(s) | 1100, 1330 |
| AfaI | GTAC | 3 cut(s) | 620, 1116, 1125 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 111 |
| AflIII | ACRYGT | 1 cut(s) | 1099 |
| AgsI | TTSAA | 2 cut(s) | 1043, 1293 |
| AjnI | CCWGG | 1 cut(s) | 1217 |
| AluBI | AGCT | 8 cut(s) | 67, 76, 337, 405, 557, 697, 842, 861 |
| AluI | AGCT | 8 cut(s) | 67, 76, 337, 405, 557, 697, 842, 861 |
| Alw21I | GWGCWC | 1 cut(s) | 1335 |
| Alw26I | GTCTC | 2 cut(s) | 120, 220 |
| Alw44I | GTGCAC | 1 cut(s) | 1331 |
| AlwI | GGATC | 6 cut(s) | 23, 420, 777, 1230, 1274, 1287 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 176 |
| AoxI | GGCC | 1 cut(s) | 485 |
| ApaLI | GTGCAC | 1 cut(s) | 1331 |
| ApeKI | GCWGC | 3 cut(s) | 47, 202, 454 |
| ApoI | RAATTY | 4 cut(s) | 28, 258, 516, 954 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1286, 1318 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 29, 89, 105, 518 |
| AspA2I | CCTAGG | 1 cut(s) | 430 |
| AspLEI | GCGC | 1 cut(s) | 610 |
| AsuHPI | GGTGA | 1 cut(s) | 22 |
| AsuII | TTCGAA | 1 cut(s) | 380 |
| AsuNHI | GCTAGC | 1 cut(s) | 127 |
| AvrII | CCTAGG | 1 cut(s) | 430 |
| AxyI | CCTNAGG | 1 cut(s) | 6 |
| BaeGI | GKGCMC | 1 cut(s) | 1335 |
| BamHI | GGATCC | 1 cut(s) | 1279 |
| BauI | CACGAG | 1 cut(s) | 1251 |
| BbrPI | CACGTG | 2 cut(s) | 1100, 1330 |
| Bbv12I | GWGCWC | 1 cut(s) | 1335 |
| BbvI | GCAGC | 3 cut(s) | 34, 189, 441 |
| BccI | CCATC | 5 cut(s) | 203, 589, 1126, 1199, 1222 |
| BceAI | ACGGC | 2 cut(s) | 472, 1338 |
| BciT130I | CCWGG | 1 cut(s) | 1219 |
| BciVI | GTATCC | 1 cut(s) | 592 |
| BcoDI | GTCTC | 2 cut(s) | 120, 220 |
| BfaI | CTAG | 3 cut(s) | 128, 431, 834 |
| BfmI | CTRYAG | 2 cut(s) | 669, 1056 |
| BfuI | GTATCC | 1 cut(s) | 592 |
| BglII | AGATCT | 1 cut(s) | 1165 |
| BisI | GCNGC | 3 cut(s) | 48, 203, 455 |
| BlnI | CCTAGG | 1 cut(s) | 430 |
| BlsI | GCNGC | 3 cut(s) | 49, 204, 456 |
| Bme1390I | CCNGG | 1 cut(s) | 1219 |
| BmiI | GGNNCC | 2 cut(s) | 398, 1281 |
| BmrFI | CCNGG | 1 cut(s) | 1219 |
| BmsI | GCATC | 3 cut(s) | 168, 363, 1059 |
| BmtI | GCTAGC | 1 cut(s) | 131 |
| BpmI | CTGGAG | 2 cut(s) | 713, 1173 |
| Bpu14I | TTCGAA | 1 cut(s) | 380 |
| BpuEI | CTTGAG | 3 cut(s) | 314, 437, 955 |
| BsaAI | YACGTR | 2 cut(s) | 1100, 1330 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1213 |
| BsaI | GGTCTC | 2 cut(s) | 120, 220 |
| BsaJI | CCNNGG | 2 cut(s) | 430, 1218 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 111 |
| Bse1I | ACTGG | 2 cut(s) | 170, 583 |
| Bse21I | CCTNAGG | 1 cut(s) | 6 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1213 |
| BseBI | CCWGG | 1 cut(s) | 1219 |
| BseDI | CCNNGG | 2 cut(s) | 430, 1218 |
| BseGI | GGATG | 4 cut(s) | 214, 503, 1093, 1214 |
| BseJI | GATNNNNATC | 1 cut(s) | 1213 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 111 |
| BseMII | CTCAG | 5 cut(s) | 20, 124, 420, 735, 1119 |
| BseNI | ACTGG | 2 cut(s) | 170, 583 |
| BseRI | GAGGAG | 2 cut(s) | 206, 665 |
| BseSI | GKGCMC | 1 cut(s) | 1335 |
| BseXI | GCAGC | 3 cut(s) | 34, 189, 441 |
| BshFI | GGCC | 1 cut(s) | 487 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1335 |
| BsiSI | CCGG | 1 cut(s) | 206 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 111 |
| BsmAI | GTCTC | 2 cut(s) | 120, 220 |
| BsmI | GAATGC | 2 cut(s) | 89, 1093 |
| BsnI | GGCC | 1 cut(s) | 487 |
| Bso31I | GGTCTC | 2 cut(s) | 120, 220 |
| Bsp119I | TTCGAA | 1 cut(s) | 380 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1335 |
| Bsp143I | GATC | 9 cut(s) | 15, 238, 412, 769, 1060, 1141, 1165, 1222, 1279 |
| BspACI | CCGC | 2 cut(s) | 57, 125 |
| BspANI | GGCC | 1 cut(s) | 487 |
| BspCNI | CTCAG | 5 cut(s) | 19, 123, 419, 736, 1120 |
| BspLI | GGNNCC | 2 cut(s) | 398, 1281 |
| BspMAI | CTGCAG | 2 cut(s) | 673, 1060 |
| BspOI | GCTAGC | 1 cut(s) | 131 |
| BspPI | GGATC | 6 cut(s) | 23, 420, 777, 1230, 1274, 1287 |
| BspT104I | TTCGAA | 1 cut(s) | 380 |
| BspTNI | GGTCTC | 2 cut(s) | 120, 220 |
| BsrI | ACTGG | 2 cut(s) | 170, 583 |
| BssECI | CCNNGG | 2 cut(s) | 430, 1218 |
| BssMI | GATC | 9 cut(s) | 15, 238, 412, 769, 1060, 1141, 1165, 1222, 1279 |
| BssSI | CACGAG | 1 cut(s) | 1251 |
| BssT1I | CCWWGG | 1 cut(s) | 430 |
| Bst2BI | CACGAG | 1 cut(s) | 1251 |
| Bst2UI | CCWGG | 1 cut(s) | 1219 |
| Bst4CI | ACNGT | 3 cut(s) | 274, 391, 818 |
| Bst6I | CTCTTC | 1 cut(s) | 278 |
| BstBAI | YACGTR | 2 cut(s) | 1100, 1330 |
| BstBI | TTCGAA | 1 cut(s) | 380 |
| BstC8I | GCNNGC | 2 cut(s) | 57, 129 |
| BstDEI | CTNAG | 7 cut(s) | 6, 110, 406, 698, 744, 1128, 1349 |
| BstF5I | GGATG | 4 cut(s) | 214, 503, 1093, 1214 |
| BstHHI | GCGC | 1 cut(s) | 610 |
| BstKTI | GATC | 9 cut(s) | 18, 241, 415, 772, 1063, 1144, 1168, 1225, 1282 |
| BstMAI | GTCTC | 2 cut(s) | 120, 220 |
| BstMBI | GATC | 9 cut(s) | 15, 238, 412, 769, 1060, 1141, 1165, 1222, 1279 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 56, 73 |
| BstNI | CCWGG | 1 cut(s) | 1219 |
| BstNSI | RCATGY | 1 cut(s) | 1339 |
| BstSCI | CCNGG | 1 cut(s) | 1217 |
| BstSFI | CTRYAG | 2 cut(s) | 669, 1056 |
| BstSLI | GKGCMC | 1 cut(s) | 1335 |
| BstV1I | GCAGC | 3 cut(s) | 34, 189, 441 |
| BstX2I | RGATCY | 5 cut(s) | 412, 769, 1165, 1222, 1279 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 187 |
| BstYI | RGATCY | 5 cut(s) | 412, 769, 1165, 1222, 1279 |
| Bsu36I | CCTNAGG | 1 cut(s) | 6 |
| BsuI | GTATCC | 1 cut(s) | 592 |
| BsuRI | GGCC | 1 cut(s) | 487 |
| BtsCI | GGATG | 4 cut(s) | 214, 503, 1093, 1214 |
| BtsI | GCAGTG | 1 cut(s) | 1053 |
| BtsIMutI | CAGTG | 5 cut(s) | 177, 264, 396, 861, 1053 |
| Cac8I | GCNNGC | 2 cut(s) | 57, 129 |
| CaiI | CAGNNNCTG | 1 cut(s) | 176 |
| CfoI | GCGC | 1 cut(s) | 610 |
| Csp6I | GTAC | 3 cut(s) | 619, 1115, 1124 |
| CviAII | CATG | 6 cut(s) | 34, 40, 61, 508, 707, 1336 |
| CviQI | GTAC | 3 cut(s) | 619, 1115, 1124 |
| DdeI | CTNAG | 7 cut(s) | 6, 110, 406, 698, 744, 1128, 1349 |
| DpnI | GATC | 9 cut(s) | 17, 240, 414, 771, 1062, 1143, 1167, 1224, 1281 |
| DpnII | GATC | 9 cut(s) | 15, 238, 412, 769, 1060, 1141, 1165, 1222, 1279 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 181 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 181 |
| Eam1104I | CTCTTC | 1 cut(s) | 278 |
| EarI | CTCTTC | 1 cut(s) | 278 |
| Eco130I | CCWWGG | 1 cut(s) | 430 |
| Eco31I | GGTCTC | 2 cut(s) | 120, 220 |
| Eco57I | CTGAAG | 3 cut(s) | 782, 898, 1064 |
| Eco72I | CACGTG | 2 cut(s) | 1100, 1330 |
| Eco81I | CCTNAGG | 1 cut(s) | 6 |
| EcoRII | CCWGG | 1 cut(s) | 1217 |
| EcoT14I | CCWWGG | 1 cut(s) | 430 |
| EcoT22I | ATGCAT | 1 cut(s) | 161 |
| ErhI | CCWWGG | 1 cut(s) | 430 |
| FaeI | CATG | 6 cut(s) | 37, 43, 64, 511, 710, 1339 |
| FatI | CATG | 6 cut(s) | 33, 39, 60, 507, 706, 1335 |
| FauI | CCCGC | 1 cut(s) | 64 |
| Fnu4HI | GCNGC | 3 cut(s) | 48, 203, 455 |
| FokI | GGATG | 4 cut(s) | 221, 490, 1080, 1201 |
| Fsp4HI | GCNGC | 3 cut(s) | 48, 203, 455 |
| FspBI | CTAG | 3 cut(s) | 128, 431, 834 |
| FspI | TGCGCA | 1 cut(s) | 609 |
| GlaI | GCGC | 1 cut(s) | 609 |
| GluI | GCNGC | 3 cut(s) | 48, 203, 455 |
| GsuI | CTGGAG | 2 cut(s) | 713, 1173 |
| HaeIII | GGCC | 1 cut(s) | 487 |
| HapII | CCGG | 1 cut(s) | 206 |
| HhaI | GCGC | 1 cut(s) | 610 |
| Hin1II | CATG | 6 cut(s) | 37, 43, 64, 511, 710, 1339 |
| Hin6I | GCGC | 1 cut(s) | 608 |
| HinP1I | GCGC | 1 cut(s) | 608 |
| HincII | GTYRAC | 1 cut(s) | 277 |
| HindII | GTYRAC | 1 cut(s) | 277 |
| HindIII | AAGCTT | 1 cut(s) | 335 |
| HinfI | GANTC | 5 cut(s) | 538, 665, 869, 1186, 1289 |
| HpaII | CCGG | 1 cut(s) | 206 |
| HphI | GGTGA | 1 cut(s) | 22 |
| Hpy166II | GTNNAC | 2 cut(s) | 277, 1333 |
| Hpy188I | TCNGA | 9 cut(s) | 321, 409, 629, 649, 753, 1065, 1146, 1170, 1243 |
| Hpy188III | TCNNGA | 3 cut(s) | 331, 416, 1283 |
| Hpy8I | GTNNAC | 2 cut(s) | 277, 1333 |
| HpyAV | CCTTC | 1 cut(s) | 387 |
| HpyCH4III | ACNGT | 3 cut(s) | 274, 391, 818 |
| HpyCH4IV | ACGT | 3 cut(s) | 961, 1099, 1329 |
| HpyCH4V | TGCA | 9 cut(s) | 159, 457, 671, 776, 1058, 1091, 1106, 1250, 1333 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 56, 73 |
| HpyF3I | CTNAG | 7 cut(s) | 6, 110, 406, 698, 744, 1128, 1349 |
| HpySE526I | ACGT | 3 cut(s) | 961, 1099, 1329 |
| Hsp92II | CATG | 6 cut(s) | 37, 43, 64, 511, 710, 1339 |
| HspAI | GCGC | 1 cut(s) | 608 |
| Kzo9I | GATC | 9 cut(s) | 15, 238, 412, 769, 1060, 1141, 1165, 1222, 1279 |
| LmnI | GCTCC | 5 cut(s) | 402, 562, 652, 694, 1007 |
| Lsp1109I | GCAGC | 3 cut(s) | 34, 189, 441 |
| LweI | GCATC | 3 cut(s) | 168, 363, 1059 |
| MaeI | CTAG | 3 cut(s) | 128, 431, 834 |
| MaeII | ACGT | 3 cut(s) | 961, 1099, 1329 |
| MaeIII | GTNAC | 4 cut(s) | 172, 385, 709, 1135 |
| MalI | GATC | 9 cut(s) | 17, 240, 414, 771, 1062, 1143, 1167, 1224, 1281 |
| MboI | GATC | 9 cut(s) | 15, 238, 412, 769, 1060, 1141, 1165, 1222, 1279 |
| MboII | GAAGA | 5 cut(s) | 37, 295, 766, 1070, 1309 |
| MflI | RGATCY | 5 cut(s) | 412, 769, 1165, 1222, 1279 |
| MhlI | GDGCHC | 1 cut(s) | 1335 |
| MluCI | AATT | 7 cut(s) | 28, 246, 258, 516, 941, 954, 1068 |
| MlyI | GAGTC | 3 cut(s) | 547, 863, 1180 |
| MmeI | TCCRAC | 1 cut(s) | 985 |
| Mph1103I | ATGCAT | 1 cut(s) | 161 |
| MroXI | GAANNNNTTC | 4 cut(s) | 29, 89, 105, 518 |
| MseI | TTAA | 2 cut(s) | 305, 566 |
| MslI | CAYNNNNRTG | 3 cut(s) | 38, 1098, 1203 |
| MspI | CCGG | 1 cut(s) | 206 |
| MspR9I | CCNGG | 1 cut(s) | 1219 |
| Mva1269I | GAATGC | 2 cut(s) | 89, 1093 |
| MvaI | CCWGG | 1 cut(s) | 1219 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 56, 73 |
| NdeII | GATC | 9 cut(s) | 15, 238, 412, 769, 1060, 1141, 1165, 1222, 1279 |
| NheI | GCTAGC | 1 cut(s) | 127 |
| NlaIII | CATG | 6 cut(s) | 37, 43, 64, 511, 710, 1339 |
| NlaIV | GGNNCC | 2 cut(s) | 398, 1281 |
| NmuCI | GTSAC | 2 cut(s) | 172, 1135 |
| NsbI | TGCGCA | 1 cut(s) | 609 |
| NsiI | ATGCAT | 1 cut(s) | 161 |
| NspI | RCATGY | 1 cut(s) | 1339 |
| NspV | TTCGAA | 1 cut(s) | 380 |
| PctI | GAATGC | 2 cut(s) | 89, 1093 |
| PdmI | GAANNNNTTC | 4 cut(s) | 29, 89, 105, 518 |
| PfeI | GAWTC | 2 cut(s) | 665, 1289 |
| PkrI | GCNGC | 3 cut(s) | 49, 204, 456 |
| PleI | GAGTC | 3 cut(s) | 546, 863, 1180 |
| PmaCI | CACGTG | 2 cut(s) | 1100, 1330 |
| PmlI | CACGTG | 2 cut(s) | 1100, 1330 |
| PpsI | GAGTC | 3 cut(s) | 546, 863, 1180 |
| Ppu21I | YACGTR | 2 cut(s) | 1100, 1330 |
| Psp6I | CCWGG | 1 cut(s) | 1217 |
| PspCI | CACGTG | 2 cut(s) | 1100, 1330 |
| PspGI | CCWGG | 1 cut(s) | 1217 |
| PspN4I | GGNNCC | 2 cut(s) | 398, 1281 |
| PstI | CTGCAG | 2 cut(s) | 673, 1060 |
| PstNI | CAGNNNCTG | 1 cut(s) | 176 |
| PsuI | RGATCY | 5 cut(s) | 412, 769, 1165, 1222, 1279 |
| RsaI | GTAC | 3 cut(s) | 620, 1116, 1125 |
| RsaNI | GTAC | 3 cut(s) | 619, 1115, 1124 |
| RseI | CAYNNNNRTG | 3 cut(s) | 38, 1098, 1203 |
| SaqAI | TTAA | 2 cut(s) | 305, 566 |
| SatI | GCNGC | 3 cut(s) | 48, 203, 455 |
| Sau3AI | GATC | 9 cut(s) | 15, 238, 412, 769, 1060, 1141, 1165, 1222, 1279 |
| SchI | GAGTC | 3 cut(s) | 547, 863, 1180 |
| ScrFI | CCNGG | 1 cut(s) | 1219 |
| SduI | GDGCHC | 1 cut(s) | 1335 |
| SfaNI | GCATC | 3 cut(s) | 168, 363, 1059 |
| SfcI | CTRYAG | 2 cut(s) | 669, 1056 |
| SfuI | TTCGAA | 1 cut(s) | 380 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 38, 1098, 1203 |
| SmlI | CTYRAG | 3 cut(s) | 329, 416, 970 |
| SmoI | CTYRAG | 3 cut(s) | 329, 416, 970 |
| Sse9I | AATT | 7 cut(s) | 28, 246, 258, 516, 941, 954, 1068 |
| SsiI | CCGC | 2 cut(s) | 57, 125 |
| SspMI | CTAG | 3 cut(s) | 128, 431, 834 |
| StyD4I | CCNGG | 1 cut(s) | 1217 |
| StyI | CCWWGG | 1 cut(s) | 430 |
| TaaI | ACNGT | 3 cut(s) | 274, 391, 818 |
| TaiI | ACGT | 3 cut(s) | 964, 1102, 1332 |
| TaqI | TCGA | 4 cut(s) | 69, 162, 380, 878 |
| TasI | AATT | 7 cut(s) | 28, 246, 258, 516, 941, 954, 1068 |
| TfiI | GAWTC | 2 cut(s) | 665, 1289 |
| Tru1I | TTAA | 2 cut(s) | 305, 566 |
| Tru9I | TTAA | 2 cut(s) | 305, 566 |
| TscAI | CASTG | 5 cut(s) | 177, 271, 396, 861, 1060 |
| TseFI | GTSAC | 2 cut(s) | 172, 1135 |
| TseI | GCWGC | 3 cut(s) | 47, 202, 454 |
| Tsp45I | GTSAC | 2 cut(s) | 172, 1135 |
| TspDTI | ATGAA | 7 cut(s) | 22, 77, 82, 492, 527, 672, 695 |
| TspRI | CASTG | 5 cut(s) | 177, 271, 396, 861, 1060 |
| VneI | GTGCAC | 1 cut(s) | 1331 |
| XapI | RAATTY | 4 cut(s) | 28, 258, 516, 954 |
| XceI | RCATGY | 1 cut(s) | 1339 |
| XmaJI | CCTAGG | 1 cut(s) | 430 |
| XmnI | GAANNNNTTC | 4 cut(s) | 29, 89, 105, 518 |
| XspI | CTAG | 3 cut(s) | 128, 431, 834 |
| Zsp2I | ATGCAT | 1 cut(s) | 161 |