Prupe.4G044800_v2.0.a1

Component of the core-TFIIH basal transcription factor involved in nucleotide excision repair (NER) of DNA

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Reverse (-)
2147970 .. 2153574
5605 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G044800.8

Sequence Viewer

Length: 1368 bp
ATGCCTCAGGTGAGGATCATAGCGAAGAATTTCATGGACATGGTGGCTGCCTTGCCCGCCATGAAGCTCGACAAGCTCTACGAGAACGCATTCATCTGCGAAGCCATTCTCAGGTCTCTGCCACCGCTAGCCAAGAAATATGTCTTACAAATGCTATGCATCGAAGTTCCAGTGACTGCCAAGTCAATGGAGGAGTGGGTGCTGCCGGATGGGGTCTCCAAACATAGAGTTGCTATTGATCGGCTAATTCAGTTGAGAATTTTCACTGAAACTGTTGACAGGAAGAGAGAAACAACTTACACATTAAATCCTATATTTCAGACCAATCTCAAGAAGCTTTTGCTTTATGGTGTAGTTTTGCCAAGAGAACCGATGCCTTCGAATGTTACAGTGAGGCTCCCAAGCTCAGAGGATCTTGAGGCTTTTGCCCTAGGACAATGGGAGTGTTTCTTGCTGCAACTTATCAACTCATCTCAAATAGAAAGGCCGTCAAACATCAGTTCATCCATGATGAAAATTTTCCAGCGTGGTCTTTTGAGTCAAAGAGATAAAGAAGCTCCAAGATTAACTGAAAGTGGTTTCCAGTTCTTGCTGATGGATACAAATGCGCAACTTTGGTACATCATCAGAGAATACATCTCTAACTCGGAGGAGCGTGGGGTAGATTCTGCAGATTTGATTTCATTCCTGCTGGAGCTTAGTTTTCATGTTACAGGCGAGGCATATAACATAAATACATTGACTGAGGTTCAGAAGAATACAATCAAGGATCTTGCAGATTTAGGATTGGTCAAACTTCAGCAGGGTCGTAAAGACAGTTGGTTTATACCTACTAGATTAGCTACTAATCTTTCAGTGAGCTTGACAGACTCATCATCGAGGAAACAGGGATTTGTAGTTGTGGAAACAAACTTCAGGCTGTATGCCTACTCAACATCTAAATTACATTGTGAAATTTTACGTCTTTTCTCAAGGGTAGAATATCAACTTCCAAACCTTATAGTTGGAGCAATAACAAAAGAAAGTTTGTATAGTGCTTTTGAAAATGGCATCACTGCAGATCAGATAATTTCTTTTCTTCAGCAGAATGCACATCCACGTGTTGCAGAGAGAGTACCATCTGTACCTGAGAATGTCACAGATCAGATTAGGCTGTGGGAAACAGATCTGAATAGGGTTGAGATGACTCCAGCGTATCATTATGATGGATTTCCATCCAGGGATCTCTTTGAGGGTGCTTCTGACTTTGCACGAGGCTATAATGCTCTGCTATGGGAGGATCCAGAGGATTCAAAGAAGATGTCTTTAGTGGTCAAGGCAGAAAACCACGTGCACATGCGAGAATATCTTAGCCGTCAAAGGCAGTAG

Protein Analysis

456

Amino Acids

52.25

Weight (kDa)

6.07

Isoelectric Point (pI)

42.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 181
Acc16I TGCGCA 1 cut(s) 609
AciI CCGC 2 cut(s) 57, 125
AclWI GGATC 6 cut(s) 23, 420, 777, 1230, 1274, 1287
AcsI RAATTY 4 cut(s) 28, 258, 516, 954
AcuI CTGAAG 3 cut(s) 782, 898, 1064
AcvI CACGTG 2 cut(s) 1100, 1330
AfaI GTAC 3 cut(s) 620, 1116, 1125
AfiI CCNNNNNNNGG 1 cut(s) 111
AflIII ACRYGT 1 cut(s) 1099
AgsI TTSAA 2 cut(s) 1043, 1293
AjnI CCWGG 1 cut(s) 1217
AluBI AGCT 8 cut(s) 67, 76, 337, 405, 557, 697, 842, 861
AluI AGCT 8 cut(s) 67, 76, 337, 405, 557, 697, 842, 861
Alw21I GWGCWC 1 cut(s) 1335
Alw26I GTCTC 2 cut(s) 120, 220
Alw44I GTGCAC 1 cut(s) 1331
AlwI GGATC 6 cut(s) 23, 420, 777, 1230, 1274, 1287
AlwNI CAGNNNCTG 1 cut(s) 176
AoxI GGCC 1 cut(s) 485
ApaLI GTGCAC 1 cut(s) 1331
ApeKI GCWGC 3 cut(s) 47, 202, 454
ApoI RAATTY 4 cut(s) 28, 258, 516, 954
ArsI GACNNNNNNTTYG 2 cut(s) 1286, 1318
Asp700I GAANNNNTTC 4 cut(s) 29, 89, 105, 518
AspA2I CCTAGG 1 cut(s) 430
AspLEI GCGC 1 cut(s) 610
AsuHPI GGTGA 1 cut(s) 22
AsuII TTCGAA 1 cut(s) 380
AsuNHI GCTAGC 1 cut(s) 127
AvrII CCTAGG 1 cut(s) 430
AxyI CCTNAGG 1 cut(s) 6
BaeGI GKGCMC 1 cut(s) 1335
BamHI GGATCC 1 cut(s) 1279
BauI CACGAG 1 cut(s) 1251
BbrPI CACGTG 2 cut(s) 1100, 1330
Bbv12I GWGCWC 1 cut(s) 1335
BbvI GCAGC 3 cut(s) 34, 189, 441
BccI CCATC 5 cut(s) 203, 589, 1126, 1199, 1222
BceAI ACGGC 2 cut(s) 472, 1338
BciT130I CCWGG 1 cut(s) 1219
BciVI GTATCC 1 cut(s) 592
BcoDI GTCTC 2 cut(s) 120, 220
BfaI CTAG 3 cut(s) 128, 431, 834
BfmI CTRYAG 2 cut(s) 669, 1056
BfuI GTATCC 1 cut(s) 592
BglII AGATCT 1 cut(s) 1165
BisI GCNGC 3 cut(s) 48, 203, 455
BlnI CCTAGG 1 cut(s) 430
BlsI GCNGC 3 cut(s) 49, 204, 456
Bme1390I CCNGG 1 cut(s) 1219
BmiI GGNNCC 2 cut(s) 398, 1281
BmrFI CCNGG 1 cut(s) 1219
BmsI GCATC 3 cut(s) 168, 363, 1059
BmtI GCTAGC 1 cut(s) 131
BpmI CTGGAG 2 cut(s) 713, 1173
Bpu14I TTCGAA 1 cut(s) 380
BpuEI CTTGAG 3 cut(s) 314, 437, 955
BsaAI YACGTR 2 cut(s) 1100, 1330
BsaBI GATNNNNATC 1 cut(s) 1213
BsaI GGTCTC 2 cut(s) 120, 220
BsaJI CCNNGG 2 cut(s) 430, 1218
Bsc4I CCNNNNNNNGG 1 cut(s) 111
Bse1I ACTGG 2 cut(s) 170, 583
Bse21I CCTNAGG 1 cut(s) 6
Bse8I GATNNNNATC 1 cut(s) 1213
BseBI CCWGG 1 cut(s) 1219
BseDI CCNNGG 2 cut(s) 430, 1218
BseGI GGATG 4 cut(s) 214, 503, 1093, 1214
BseJI GATNNNNATC 1 cut(s) 1213
BseLI CCNNNNNNNGG 1 cut(s) 111
BseMII CTCAG 5 cut(s) 20, 124, 420, 735, 1119
BseNI ACTGG 2 cut(s) 170, 583
BseRI GAGGAG 2 cut(s) 206, 665
BseSI GKGCMC 1 cut(s) 1335
BseXI GCAGC 3 cut(s) 34, 189, 441
BshFI GGCC 1 cut(s) 487
BsiHKAI GWGCWC 1 cut(s) 1335
BsiSI CCGG 1 cut(s) 206
BslI CCNNNNNNNGG 1 cut(s) 111
BsmAI GTCTC 2 cut(s) 120, 220
BsmI GAATGC 2 cut(s) 89, 1093
BsnI GGCC 1 cut(s) 487
Bso31I GGTCTC 2 cut(s) 120, 220
Bsp119I TTCGAA 1 cut(s) 380
Bsp1286I GDGCHC 1 cut(s) 1335
Bsp143I GATC 9 cut(s) 15, 238, 412, 769, 1060, 1141, 1165, 1222, 1279
BspACI CCGC 2 cut(s) 57, 125
BspANI GGCC 1 cut(s) 487
BspCNI CTCAG 5 cut(s) 19, 123, 419, 736, 1120
BspLI GGNNCC 2 cut(s) 398, 1281
BspMAI CTGCAG 2 cut(s) 673, 1060
BspOI GCTAGC 1 cut(s) 131
BspPI GGATC 6 cut(s) 23, 420, 777, 1230, 1274, 1287
BspT104I TTCGAA 1 cut(s) 380
BspTNI GGTCTC 2 cut(s) 120, 220
BsrI ACTGG 2 cut(s) 170, 583
BssECI CCNNGG 2 cut(s) 430, 1218
BssMI GATC 9 cut(s) 15, 238, 412, 769, 1060, 1141, 1165, 1222, 1279
BssSI CACGAG 1 cut(s) 1251
BssT1I CCWWGG 1 cut(s) 430
Bst2BI CACGAG 1 cut(s) 1251
Bst2UI CCWGG 1 cut(s) 1219
Bst4CI ACNGT 3 cut(s) 274, 391, 818
Bst6I CTCTTC 1 cut(s) 278
BstBAI YACGTR 2 cut(s) 1100, 1330
BstBI TTCGAA 1 cut(s) 380
BstC8I GCNNGC 2 cut(s) 57, 129
BstDEI CTNAG 7 cut(s) 6, 110, 406, 698, 744, 1128, 1349
BstF5I GGATG 4 cut(s) 214, 503, 1093, 1214
BstHHI GCGC 1 cut(s) 610
BstKTI GATC 9 cut(s) 18, 241, 415, 772, 1063, 1144, 1168, 1225, 1282
BstMAI GTCTC 2 cut(s) 120, 220
BstMBI GATC 9 cut(s) 15, 238, 412, 769, 1060, 1141, 1165, 1222, 1279
BstMWI GCNNNNNNNGC 2 cut(s) 56, 73
BstNI CCWGG 1 cut(s) 1219
BstNSI RCATGY 1 cut(s) 1339
BstSCI CCNGG 1 cut(s) 1217
BstSFI CTRYAG 2 cut(s) 669, 1056
BstSLI GKGCMC 1 cut(s) 1335
BstV1I GCAGC 3 cut(s) 34, 189, 441
BstX2I RGATCY 5 cut(s) 412, 769, 1165, 1222, 1279
BstXI CCANNNNNNTGG 1 cut(s) 187
BstYI RGATCY 5 cut(s) 412, 769, 1165, 1222, 1279
Bsu36I CCTNAGG 1 cut(s) 6
BsuI GTATCC 1 cut(s) 592
BsuRI GGCC 1 cut(s) 487
BtsCI GGATG 4 cut(s) 214, 503, 1093, 1214
BtsI GCAGTG 1 cut(s) 1053
BtsIMutI CAGTG 5 cut(s) 177, 264, 396, 861, 1053
Cac8I GCNNGC 2 cut(s) 57, 129
CaiI CAGNNNCTG 1 cut(s) 176
CfoI GCGC 1 cut(s) 610
Csp6I GTAC 3 cut(s) 619, 1115, 1124
CviAII CATG 6 cut(s) 34, 40, 61, 508, 707, 1336
CviQI GTAC 3 cut(s) 619, 1115, 1124
DdeI CTNAG 7 cut(s) 6, 110, 406, 698, 744, 1128, 1349
DpnI GATC 9 cut(s) 17, 240, 414, 771, 1062, 1143, 1167, 1224, 1281
DpnII GATC 9 cut(s) 15, 238, 412, 769, 1060, 1141, 1165, 1222, 1279
DrdI GACNNNNNNGTC 1 cut(s) 181
DseDI GACNNNNNNGTC 1 cut(s) 181
Eam1104I CTCTTC 1 cut(s) 278
EarI CTCTTC 1 cut(s) 278
Eco130I CCWWGG 1 cut(s) 430
Eco31I GGTCTC 2 cut(s) 120, 220
Eco57I CTGAAG 3 cut(s) 782, 898, 1064
Eco72I CACGTG 2 cut(s) 1100, 1330
Eco81I CCTNAGG 1 cut(s) 6
EcoRII CCWGG 1 cut(s) 1217
EcoT14I CCWWGG 1 cut(s) 430
EcoT22I ATGCAT 1 cut(s) 161
ErhI CCWWGG 1 cut(s) 430
FaeI CATG 6 cut(s) 37, 43, 64, 511, 710, 1339
FatI CATG 6 cut(s) 33, 39, 60, 507, 706, 1335
FauI CCCGC 1 cut(s) 64
Fnu4HI GCNGC 3 cut(s) 48, 203, 455
FokI GGATG 4 cut(s) 221, 490, 1080, 1201
Fsp4HI GCNGC 3 cut(s) 48, 203, 455
FspBI CTAG 3 cut(s) 128, 431, 834
FspI TGCGCA 1 cut(s) 609
GlaI GCGC 1 cut(s) 609
GluI GCNGC 3 cut(s) 48, 203, 455
GsuI CTGGAG 2 cut(s) 713, 1173
HaeIII GGCC 1 cut(s) 487
HapII CCGG 1 cut(s) 206
HhaI GCGC 1 cut(s) 610
Hin1II CATG 6 cut(s) 37, 43, 64, 511, 710, 1339
Hin6I GCGC 1 cut(s) 608
HinP1I GCGC 1 cut(s) 608
HincII GTYRAC 1 cut(s) 277
HindII GTYRAC 1 cut(s) 277
HindIII AAGCTT 1 cut(s) 335
HinfI GANTC 5 cut(s) 538, 665, 869, 1186, 1289
HpaII CCGG 1 cut(s) 206
HphI GGTGA 1 cut(s) 22
Hpy166II GTNNAC 2 cut(s) 277, 1333
Hpy188I TCNGA 9 cut(s) 321, 409, 629, 649, 753, 1065, 1146, 1170, 1243
Hpy188III TCNNGA 3 cut(s) 331, 416, 1283
Hpy8I GTNNAC 2 cut(s) 277, 1333
HpyAV CCTTC 1 cut(s) 387
HpyCH4III ACNGT 3 cut(s) 274, 391, 818
HpyCH4IV ACGT 3 cut(s) 961, 1099, 1329
HpyCH4V TGCA 9 cut(s) 159, 457, 671, 776, 1058, 1091, 1106, 1250, 1333
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 73
HpyF3I CTNAG 7 cut(s) 6, 110, 406, 698, 744, 1128, 1349
HpySE526I ACGT 3 cut(s) 961, 1099, 1329
Hsp92II CATG 6 cut(s) 37, 43, 64, 511, 710, 1339
HspAI GCGC 1 cut(s) 608
Kzo9I GATC 9 cut(s) 15, 238, 412, 769, 1060, 1141, 1165, 1222, 1279
LmnI GCTCC 5 cut(s) 402, 562, 652, 694, 1007
Lsp1109I GCAGC 3 cut(s) 34, 189, 441
LweI GCATC 3 cut(s) 168, 363, 1059
MaeI CTAG 3 cut(s) 128, 431, 834
MaeII ACGT 3 cut(s) 961, 1099, 1329
MaeIII GTNAC 4 cut(s) 172, 385, 709, 1135
MalI GATC 9 cut(s) 17, 240, 414, 771, 1062, 1143, 1167, 1224, 1281
MboI GATC 9 cut(s) 15, 238, 412, 769, 1060, 1141, 1165, 1222, 1279
MboII GAAGA 5 cut(s) 37, 295, 766, 1070, 1309
MflI RGATCY 5 cut(s) 412, 769, 1165, 1222, 1279
MhlI GDGCHC 1 cut(s) 1335
MluCI AATT 7 cut(s) 28, 246, 258, 516, 941, 954, 1068
MlyI GAGTC 3 cut(s) 547, 863, 1180
MmeI TCCRAC 1 cut(s) 985
Mph1103I ATGCAT 1 cut(s) 161
MroXI GAANNNNTTC 4 cut(s) 29, 89, 105, 518
MseI TTAA 2 cut(s) 305, 566
MslI CAYNNNNRTG 3 cut(s) 38, 1098, 1203
MspI CCGG 1 cut(s) 206
MspR9I CCNGG 1 cut(s) 1219
Mva1269I GAATGC 2 cut(s) 89, 1093
MvaI CCWGG 1 cut(s) 1219
MwoI GCNNNNNNNGC 2 cut(s) 56, 73
NdeII GATC 9 cut(s) 15, 238, 412, 769, 1060, 1141, 1165, 1222, 1279
NheI GCTAGC 1 cut(s) 127
NlaIII CATG 6 cut(s) 37, 43, 64, 511, 710, 1339
NlaIV GGNNCC 2 cut(s) 398, 1281
NmuCI GTSAC 2 cut(s) 172, 1135
NsbI TGCGCA 1 cut(s) 609
NsiI ATGCAT 1 cut(s) 161
NspI RCATGY 1 cut(s) 1339
NspV TTCGAA 1 cut(s) 380
PctI GAATGC 2 cut(s) 89, 1093
PdmI GAANNNNTTC 4 cut(s) 29, 89, 105, 518
PfeI GAWTC 2 cut(s) 665, 1289
PkrI GCNGC 3 cut(s) 49, 204, 456
PleI GAGTC 3 cut(s) 546, 863, 1180
PmaCI CACGTG 2 cut(s) 1100, 1330
PmlI CACGTG 2 cut(s) 1100, 1330
PpsI GAGTC 3 cut(s) 546, 863, 1180
Ppu21I YACGTR 2 cut(s) 1100, 1330
Psp6I CCWGG 1 cut(s) 1217
PspCI CACGTG 2 cut(s) 1100, 1330
PspGI CCWGG 1 cut(s) 1217
PspN4I GGNNCC 2 cut(s) 398, 1281
PstI CTGCAG 2 cut(s) 673, 1060
PstNI CAGNNNCTG 1 cut(s) 176
PsuI RGATCY 5 cut(s) 412, 769, 1165, 1222, 1279
RsaI GTAC 3 cut(s) 620, 1116, 1125
RsaNI GTAC 3 cut(s) 619, 1115, 1124
RseI CAYNNNNRTG 3 cut(s) 38, 1098, 1203
SaqAI TTAA 2 cut(s) 305, 566
SatI GCNGC 3 cut(s) 48, 203, 455
Sau3AI GATC 9 cut(s) 15, 238, 412, 769, 1060, 1141, 1165, 1222, 1279
SchI GAGTC 3 cut(s) 547, 863, 1180
ScrFI CCNGG 1 cut(s) 1219
SduI GDGCHC 1 cut(s) 1335
SfaNI GCATC 3 cut(s) 168, 363, 1059
SfcI CTRYAG 2 cut(s) 669, 1056
SfuI TTCGAA 1 cut(s) 380
SmiMI CAYNNNNRTG 3 cut(s) 38, 1098, 1203
SmlI CTYRAG 3 cut(s) 329, 416, 970
SmoI CTYRAG 3 cut(s) 329, 416, 970
Sse9I AATT 7 cut(s) 28, 246, 258, 516, 941, 954, 1068
SsiI CCGC 2 cut(s) 57, 125
SspMI CTAG 3 cut(s) 128, 431, 834
StyD4I CCNGG 1 cut(s) 1217
StyI CCWWGG 1 cut(s) 430
TaaI ACNGT 3 cut(s) 274, 391, 818
TaiI ACGT 3 cut(s) 964, 1102, 1332
TaqI TCGA 4 cut(s) 69, 162, 380, 878
TasI AATT 7 cut(s) 28, 246, 258, 516, 941, 954, 1068
TfiI GAWTC 2 cut(s) 665, 1289
Tru1I TTAA 2 cut(s) 305, 566
Tru9I TTAA 2 cut(s) 305, 566
TscAI CASTG 5 cut(s) 177, 271, 396, 861, 1060
TseFI GTSAC 2 cut(s) 172, 1135
TseI GCWGC 3 cut(s) 47, 202, 454
Tsp45I GTSAC 2 cut(s) 172, 1135
TspDTI ATGAA 7 cut(s) 22, 77, 82, 492, 527, 672, 695
TspRI CASTG 5 cut(s) 177, 271, 396, 861, 1060
VneI GTGCAC 1 cut(s) 1331
XapI RAATTY 4 cut(s) 28, 258, 516, 954
XceI RCATGY 1 cut(s) 1339
XmaJI CCTAGG 1 cut(s) 430
XmnI GAANNNNTTC 4 cut(s) 29, 89, 105, 518
XspI CTAG 3 cut(s) 128, 431, 834
Zsp2I ATGCAT 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.