Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0006777

Physical Location & Seq

Genomic Coordinates Reverse (-)

5217908 .. 5223104

Gene Structure 5197 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG061600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGCCTCAGGTGAGGATCATAGCGAAGAACTTCATGGACATGGTGGCTGCCTTGCCCGCCATGAAGCTCGATAAGCTCTACGACAACTCATTCATCTGCGAAGCCATTCTCAGGTCTCTGCCACCACTGGCCAAGAAATATGTTTTGCAAATGCTATGCGTCGAGCTTCCGGTCAATTCCAAGTCGATGGAGGAGTGGGTGCTGCCCGATGGGGCCTCCAAGCATCGAGTGGCGATTGATCGATTGGTTCAATTGAGAATATTCACCGAGACCAAGAAGAAGGGGGATGTTACATACACATTGAATCCTATATTTCAGACTAATCTCAAGAAGCTTCTGGTATACGGTGTAGTTTTGCCAAGAGAACCAATGCCTTCAAGTGTCACAGTGAGGCGCCCAAGCTCGGAGGAACTTGAGGCTTTTGCTCTAGAACAATGGGAGTGTTTCTTGTTGCAACTTATCAACTCCTCTCAAACTGAAAGGCCGTCAAACATCAGTTCGTCTATGATGAAAACTTTCCAGCGGGGTCTTGTCACTCAAAGAGATAGAGAAGCTCCTAGGTTAACTGAAAGTGGTTTCCAGTTCTTGCTGATGGATACAAATGCACAACTTTGGTACATCATCAGAGAATATATCACTAGCTCAGAGGAGCGCGGGATCGATTCGGCAGATTTGATTTCATTCCTGCTAGAGCTAAGTTTTCATGTTACAGGCGAGGCATATAACATAAATACATTGACTGAGGTTCAGAAAAATACGATCAAGGACTTCACAGATTTGGGATTGGTCAAACTTCAGCAGGGTAGGAAAGAGAGTTGGTTTATACCTACTAAATTAGCTACTAATCTTTCGGTGAGCTTGACAGACACATCATCAAGGAAACAGGGATTTGTGGTTGTGGAAACAAACTTTAGGCTCTATGCATACTCATCATCAAAATTGCATTGTGAAATTTTGCGTCTTTTCGCAAGGATAGAATATCAACTTCCGAACCTTATAGTTGGGGCAATAACAAAAGAAAGTCTGTATGGTGCTTTTGACAATTGCATCACTGCGGAACAGATAATTTCTTTTCTTCAGCAAAATGCACATCCACGTGTTGCGGAGAGAATACCATCTGTACCTGAGAATGTCACGGATCAGGTTAGACCCTTCTCTATGTTCATGTGTATTCAGCAGATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0000438 GO:0000439 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005675 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0016310 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032774 GO:0032806 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070816 GO:0071704 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1902494 GO:1902554 GO:1902911 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko03420 ko05203 map03022 map03420 map05203

Pfam Domains

Protein Families

Tfb2

Protein Analysis

394

Amino Acids

45.06

Weight (kDa)

7.57

Isoelectric Point (pI)

40.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tfb2	PF03849	14 - 365	2e-114	Transcription factor Tfb2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0006777)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17020 AT4G17020 AT4G17020
fragaria_vesca	FvH4_3g09430
malus_domestica	MD05G1314300.v1.1 MD10G1295600.v1.1
prunus_persica	Prupe.4G044800_v2.0.a1 Prupe.4G044800_v2.0.a1 Prupe.4G044800_v2.0.a1 Prupe.4G044800_v2.0.a1 Prupe.4G044800_v2.0.a1 Prupe.4G044800_v2.0.a1 Prupe.4G044800_v2.0.a1 Prupe.4G044800_v2.0.a1
pyrus_communis	pycom05g29230 pycom10g24830
rosa_chinensis	RchiOBHm_Chr5g0008121
rosa_laevigata	RLG00000031537
rosa_multiflora	Rmu_sc0001626.1_g000005
rosa_roxburghii	Rroxscaffold_1G00068370
rosa_rugosa	Rorug04G0433400
rosa_samantha	Rh5AG061600 Rh5BG058300 Rh5CG068500 Rh5DG057600
rosa_wichuraiana	Rw5G005900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	393
AccI	GTMKAC	1 cut(s)	342
AccII	CGCG	1 cut(s)	654
AciI	CCGC	5 cut(s)	57, 523, 654, 1055, 1103
AclWI	GGATC	3 cut(s)	23, 665, 1146
AcoI	YGGCCR	1 cut(s)	129
AcsI	RAATTY	1 cut(s)	951
AcuI	CTGAAG	2 cut(s)	779, 1061
AcvI	CACGTG	1 cut(s)	1097
AcyI	GRCGYC	1 cut(s)	394
AfaI	GTAC	2 cut(s)	617, 1122
AfiI	CCNNNNNNNGG	2 cut(s)	111, 403
AflIII	ACRYGT	1 cut(s)	1096
AgsI	TTSAA	3 cut(s)	251, 304, 378
Alw26I	GTCTC	2 cut(s)	120, 263
AlwI	GGATC	3 cut(s)	23, 665, 1146
AoxI	GGCC	3 cut(s)	129, 213, 482
ApeKI	GCWGC	2 cut(s)	47, 202
ApoI	RAATTY	1 cut(s)	951
Asp700I	GAANNNNTTC	3 cut(s)	29, 105, 515
AspA2I	CCTAGG	1 cut(s)	557
AspLEI	GCGC	2 cut(s)	396, 654
AspS9I	GGNCC	1 cut(s)	213
AsuHPI	GGTGA	3 cut(s)	22, 256, 865
AvrII	CCTAGG	1 cut(s)	557
AxyI	CCTNAGG	1 cut(s)	6
BalI	TGGCCA	1 cut(s)	131
BanI	GGYRCC	1 cut(s)	393
BbrPI	CACGTG	1 cut(s)	1097
BbvI	GCAGC	2 cut(s)	34, 189
BccI	CCATC	4 cut(s)	181, 203, 586, 1123
BceAI	ACGGC	1 cut(s)	469
BciVI	GTATCC	1 cut(s)	589
BcoDI	GTCTC	2 cut(s)	120, 263
BfaI	CTAG	4 cut(s)	428, 558, 639, 689
BfoI	RGCGCY	1 cut(s)	397
BfuI	GTATCC	1 cut(s)	589
BisI	GCNGC	2 cut(s)	48, 203
BlnI	CCTAGG	1 cut(s)	557
BlsI	GCNGC	2 cut(s)	49, 204
BmgT120I	GGNCC	1 cut(s)	213
BmiI	GGNNCC	2 cut(s)	214, 395
BmsI	GCATC	2 cut(s)	232, 1056
BpuEI	CTTGAG	2 cut(s)	311, 434
Bsa29I	ATCGAT	2 cut(s)	241, 660
BsaAI	YACGTR	1 cut(s)	1097
BsaHI	GRCGYC	1 cut(s)	394
BsaI	GGTCTC	2 cut(s)	120, 263
BsaJI	CCNNGG	1 cut(s)	557
BsaWI	WCCGGW	1 cut(s)	169
Bsc4I	CCNNNNNNNGG	2 cut(s)	111, 403
Bse1I	ACTGG	2 cut(s)	132, 580
Bse21I	CCTNAGG	1 cut(s)	6
BseCI	ATCGAT	2 cut(s)	241, 660
BseDI	CCNNGG	1 cut(s)	557
BseGI	GGATG	2 cut(s)	292, 1090
BseLI	CCNNNNNNNGG	2 cut(s)	111, 403
BseMII	CTCAG	5 cut(s)	20, 124, 657, 732, 1116
BseNI	ACTGG	2 cut(s)	132, 580
BseRI	GAGGAG	3 cut(s)	206, 457, 662
BseXI	GCAGC	2 cut(s)	34, 189
Bsh1236I	CGCG	1 cut(s)	654
BshFI	GGCC	3 cut(s)	131, 215, 484
BshNI	GGYRCC	1 cut(s)	393
BshVI	ATCGAT	2 cut(s)	241, 660
BsiSI	CCGG	1 cut(s)	170
BslI	CCNNNNNNNGG	2 cut(s)	111, 403
BsmAI	GTCTC	2 cut(s)	120, 263
BsnI	GGCC	3 cut(s)	131, 215, 484
Bso31I	GGTCTC	2 cut(s)	120, 263
Bsp143I	GATC	5 cut(s)	15, 238, 657, 759, 1138
BspACI	CCGC	5 cut(s)	57, 523, 654, 1055, 1103
BspANI	GGCC	3 cut(s)	131, 215, 484
BspCNI	CTCAG	5 cut(s)	19, 123, 656, 733, 1117
BspDI	ATCGAT	2 cut(s)	241, 660
BspFNI	CGCG	1 cut(s)	654
BspLI	GGNNCC	2 cut(s)	214, 395
BspPI	GGATC	3 cut(s)	23, 665, 1146
BspT107I	GGYRCC	1 cut(s)	393
BspTNI	GGTCTC	2 cut(s)	120, 263
BsrI	ACTGG	2 cut(s)	132, 580
BssECI	CCNNGG	1 cut(s)	557
BssMI	GATC	5 cut(s)	15, 238, 657, 759, 1138
BssNAI	GTATAC	1 cut(s)	343
BssNI	GRCGYC	1 cut(s)	394
BssT1I	CCWWGG	1 cut(s)	557
Bst1107I	GTATAC	1 cut(s)	343
Bst4CI	ACNGT	2 cut(s)	347, 388
BstACI	GRCGYC	1 cut(s)	394
BstBAI	YACGTR	1 cut(s)	1097
BstC8I	GCNNGC	1 cut(s)	57
BstDEI	CTNAG	6 cut(s)	6, 110, 643, 695, 741, 1125
BstF5I	GGATG	2 cut(s)	292, 1090
BstFNI	CGCG	1 cut(s)	654
BstH2I	RGCGCY	1 cut(s)	397
BstHHI	GCGC	2 cut(s)	396, 654
BstKTI	GATC	5 cut(s)	18, 241, 660, 762, 1141
BstMAI	GTCTC	2 cut(s)	120, 263
BstMBI	GATC	5 cut(s)	15, 238, 657, 759, 1138
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 73
BstUI	CGCG	1 cut(s)	654
BstV1I	GCAGC	2 cut(s)	34, 189
BstXI	CCANNNNNNTGG	1 cut(s)	187
BstZ17I	GTATAC	1 cut(s)	343
Bsu15I	ATCGAT	2 cut(s)	241, 660
Bsu36I	CCTNAGG	1 cut(s)	6
BsuI	GTATCC	1 cut(s)	589
BsuRI	GGCC	3 cut(s)	131, 215, 484
BsuTUI	ATCGAT	2 cut(s)	241, 660
BtsCI	GGATG	2 cut(s)	292, 1090
BtsI	GCAGTG	1 cut(s)	1050
BtsIMutI	CAGTG	3 cut(s)	125, 393, 1050
Cac8I	GCNNGC	1 cut(s)	57
CfoI	GCGC	2 cut(s)	396, 654
Cfr13I	GGNCC	1 cut(s)	213
ClaI	ATCGAT	2 cut(s)	241, 660
CseI	GACGC	2 cut(s)	148, 947
Csp6I	GTAC	2 cut(s)	616, 1121
CviAII	CATG	5 cut(s)	34, 40, 61, 704, 1165
CviQI	GTAC	2 cut(s)	616, 1121
DdeI	CTNAG	6 cut(s)	6, 110, 643, 695, 741, 1125
DinI	GGCGCC	1 cut(s)	395
DpnI	GATC	5 cut(s)	17, 240, 659, 761, 1140
DpnII	GATC	5 cut(s)	15, 238, 657, 759, 1138
EaeI	YGGCCR	1 cut(s)	129
Eco130I	CCWWGG	1 cut(s)	557
Eco31I	GGTCTC	2 cut(s)	120, 263
Eco57I	CTGAAG	2 cut(s)	779, 1061
Eco72I	CACGTG	1 cut(s)	1097
Eco81I	CCTNAGG	1 cut(s)	6
EcoO109I	RGGNCCY	1 cut(s)	213
EcoT14I	CCWWGG	1 cut(s)	557
EcoT22I	ATGCAT	1 cut(s)	925
EgeI	GGCGCC	1 cut(s)	395
EheI	GGCGCC	1 cut(s)	395
ErhI	CCWWGG	1 cut(s)	557
FaeI	CATG	5 cut(s)	37, 43, 64, 707, 1168
FatI	CATG	5 cut(s)	33, 39, 60, 703, 1164
FauI	CCCGC	3 cut(s)	64, 516, 647
FblI	GTMKAC	1 cut(s)	342
Fnu4HI	GCNGC	2 cut(s)	48, 203
FokI	GGATG	2 cut(s)	299, 1077
Fsp4HI	GCNGC	2 cut(s)	48, 203
FspBI	CTAG	4 cut(s)	428, 558, 639, 689
GlaI	GCGC	2 cut(s)	395, 653
GluI	GCNGC	2 cut(s)	48, 203
HaeII	RGCGCY	1 cut(s)	397
HaeIII	GGCC	3 cut(s)	131, 215, 484
HapII	CCGG	1 cut(s)	170
HgaI	GACGC	2 cut(s)	148, 947
HhaI	GCGC	2 cut(s)	396, 654
Hin1I	GRCGYC	1 cut(s)	394
Hin1II	CATG	5 cut(s)	37, 43, 64, 707, 1168
Hin6I	GCGC	2 cut(s)	394, 652
HinP1I	GCGC	2 cut(s)	394, 652
HincII	GTYRAC	1 cut(s)	564
HindII	GTYRAC	1 cut(s)	564
HindIII	AAGCTT	1 cut(s)	332
HinfI	GANTC	2 cut(s)	304, 662
HpaI	GTTAAC	1 cut(s)	564
HpaII	CCGG	1 cut(s)	170
HphI	GGTGA	3 cut(s)	22, 256, 865
Hpy166II	GTNNAC	2 cut(s)	343, 564
Hpy188I	TCNGA	6 cut(s)	318, 406, 626, 646, 750, 990
Hpy188III	TCNNGA	2 cut(s)	328, 428
Hpy8I	GTNNAC	2 cut(s)	343, 564
Hpy99I	CGWCG	1 cut(s)	164
HpyAV	CCTTC	3 cut(s)	274, 384, 1162
HpyCH4III	ACNGT	2 cut(s)	347, 388
HpyCH4IV	ACGT	1 cut(s)	1096
HpyCH4V	TGCA	7 cut(s)	148, 454, 605, 923, 943, 1047, 1088
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 73
HpyF3I	CTNAG	6 cut(s)	6, 110, 643, 695, 741, 1125
HpySE526I	ACGT	1 cut(s)	1096
Hsp92I	GRCGYC	1 cut(s)	394
Hsp92II	CATG	5 cut(s)	37, 43, 64, 707, 1168
HspAI	GCGC	2 cut(s)	394, 652
KasI	GGCGCC	1 cut(s)	393
KspAI	GTTAAC	1 cut(s)	564
Kzo9I	GATC	5 cut(s)	15, 238, 657, 759, 1138
LmnI	GCTCC	2 cut(s)	559, 649
Lsp1109I	GCAGC	2 cut(s)	34, 189
LweI	GCATC	2 cut(s)	232, 1056
MaeI	CTAG	4 cut(s)	428, 558, 639, 689
MaeII	ACGT	1 cut(s)	1096
MaeIII	GTNAC	5 cut(s)	289, 382, 532, 706, 1132
MalI	GATC	5 cut(s)	17, 240, 659, 761, 1140
MboI	GATC	5 cut(s)	15, 238, 657, 759, 1138
MboII	GAAGA	3 cut(s)	37, 289, 1067
MfeI	CAATTG	2 cut(s)	251, 1042
MlsI	TGGCCA	1 cut(s)	131
MluCI	AATT	7 cut(s)	175, 251, 833, 938, 951, 1042, 1065
MluNI	TGGCCA	1 cut(s)	131
Mly113I	GGCGCC	1 cut(s)	394
Mox20I	TGGCCA	1 cut(s)	131
Mph1103I	ATGCAT	1 cut(s)	925
MroXI	GAANNNNTTC	3 cut(s)	29, 105, 515
MscI	TGGCCA	1 cut(s)	131
MseI	TTAA	1 cut(s)	563
MslI	CAYNNNNRTG	2 cut(s)	38, 1095
Msp20I	TGGCCA	1 cut(s)	131
MspA1I	CMGCKG	1 cut(s)	523
MspI	CCGG	1 cut(s)	170
MunI	CAATTG	2 cut(s)	251, 1042
MvnI	CGCG	1 cut(s)	654
MwoI	GCNNNNNNNGC	2 cut(s)	56, 73
NarI	GGCGCC	1 cut(s)	394
NdeII	GATC	5 cut(s)	15, 238, 657, 759, 1138
NlaIII	CATG	5 cut(s)	37, 43, 64, 707, 1168
NlaIV	GGNNCC	2 cut(s)	214, 395
NmuCI	GTSAC	3 cut(s)	382, 532, 1132
NsiI	ATGCAT	1 cut(s)	925
PdmI	GAANNNNTTC	3 cut(s)	29, 105, 515
PfeI	GAWTC	2 cut(s)	304, 662
PkrI	GCNGC	2 cut(s)	49, 204
PluTI	GGCGCC	1 cut(s)	397
PmaCI	CACGTG	1 cut(s)	1097
PmlI	CACGTG	1 cut(s)	1097
Ppu21I	YACGTR	1 cut(s)	1097
PspCI	CACGTG	1 cut(s)	1097
PspN4I	GGNNCC	2 cut(s)	214, 395
PspPI	GGNCC	1 cut(s)	213
RsaI	GTAC	2 cut(s)	617, 1122
RsaNI	GTAC	2 cut(s)	616, 1121
RseI	CAYNNNNRTG	2 cut(s)	38, 1095
SaqAI	TTAA	1 cut(s)	563
SatI	GCNGC	2 cut(s)	48, 203
Sau3AI	GATC	5 cut(s)	15, 238, 657, 759, 1138
Sau96I	GGNCC	1 cut(s)	213
SfaNI	GCATC	2 cut(s)	232, 1056
SfoI	GGCGCC	1 cut(s)	395
SmiMI	CAYNNNNRTG	2 cut(s)	38, 1095
SmlI	CTYRAG	2 cut(s)	326, 413
SmoI	CTYRAG	2 cut(s)	326, 413
Sse9I	AATT	7 cut(s)	175, 251, 833, 938, 951, 1042, 1065
SsiI	CCGC	5 cut(s)	57, 523, 654, 1055, 1103
SspDI	GGCGCC	1 cut(s)	393
SspI	AATATT	1 cut(s)	261
SspMI	CTAG	4 cut(s)	428, 558, 639, 689
StyI	CCWWGG	1 cut(s)	557
TaaI	ACNGT	2 cut(s)	347, 388
TaiI	ACGT	1 cut(s)	1099
TaqI	TCGA	6 cut(s)	69, 162, 185, 226, 241, 660
TasI	AATT	7 cut(s)	175, 251, 833, 938, 951, 1042, 1065
TfiI	GAWTC	2 cut(s)	304, 662
Tru1I	TTAA	1 cut(s)	563
Tru9I	TTAA	1 cut(s)	563
TscAI	CASTG	3 cut(s)	132, 393, 1057
TseFI	GTSAC	3 cut(s)	382, 532, 1132
TseI	GCWGC	2 cut(s)	47, 202
Tsp45I	GTSAC	3 cut(s)	382, 532, 1132
TspDTI	ATGAA	7 cut(s)	22, 77, 82, 524, 669, 692, 1153
TspGWI	ACGGA	1 cut(s)	1151
TspRI	CASTG	3 cut(s)	132, 393, 1057
XapI	RAATTY	1 cut(s)	951
XbaI	TCTAGA	1 cut(s)	427
XcmI	CCANNNNNNNNNTGG	1 cut(s)	226
XmaJI	CCTAGG	1 cut(s)	557
XmiI	GTMKAC	1 cut(s)	342
XmnI	GAANNNNTTC	3 cut(s)	29, 105, 515
XspI	CTAG	4 cut(s)	428, 558, 639, 689
Zsp2I	ATGCAT	1 cut(s)	925

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.