pycom05g29230

Component of the core-TFIIH basal transcription factor involved in nucleotide excision repair (NER) of DNA

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
29709219 .. 29713989
4771 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g29230.8

Sequence Viewer

Length: 1365 bp
ATGCCTCAGGTGAGGATCATCGCGAAGAATTTCATGGACATGGTGGCCGCCCTGCCCGCCATGAAGCTTGACAAGCTATACGAGAATGCATTCATCTGCGAAGCAATTCTCAGGTCTCTGCCACCGTTGGCTAAGAAATATGTCTTGCAACTGTTGTGCATTGAAGTTCCGGTGACTGCCAAGTCAATGGAGGAGTGGGTGCTTCCTGATGGGGTCTCGAAACATAGAGTTGCAATTGATCGGCTGATTCAATTGAGAATATTTACTGAAACTGTGGACAGGAAGAGGGAAACAACTTACACACTAAATCCTATATTTCAGACCAATCTCAAGAAGCTTCTGGTACATGGTGTAGTTTTGCCAAGAGAACCAATGCCATCAAATATCACAGTGAGGCTCCCAAGCTTGGAGGATCTTCAGGCTTTTGCCCTAGAACAATGGGAGTGTTTCTTGCTGCAACTTATCAACTCATCTCAAAGTGAGAGGCCATCGAACATCAGTTCGTCTATGATGAAAACTTTCCAGCGGGGTCTTTTGAGTCAAAGGGATAGAGAAGCTCCAAGATTAACTGAAAGTGGTTTCCAGTTCTTGTTGATGGATACAAATGCACAACTCTGGTACATCATCAGAGAGTACATCTCTAACTCAGAGGAGCGTGGTTTAGATTCTGCAGATTTGATTTCGTTCCTGCTAGAACTTAGTTTTCATGTTACAGGCGAGGCATATAACATAAATACATTGAACGAGAGGCAGAAGAATATAATCAAGGATCTTGCAGATTTGGGACTGATCAAACTTCAGCAGGGAAGGAAAGACAGTTGGTTTATACCTACTGAATTAGCGACTAATCTATCAGTTAGCTTGACAGACTCATCATCGAGGAAACAGGGATTTGTTGTTGTGGAAACAAACTTCAGACTCTATGCCTACTCAACATCTAAATTACATTGTGAAATTTTACGTCTTTTCTCAAGGGTAGAATATCAACTTCCAAACCTTATTGTTGGAGCAATAACAAAAGAAAGTTTATATAGTGCTTTTGAAAATGGCATCACTGGAGAACAGATAATTTCTTTTCTTCAGCAGAATGCACATCCACGCGTTGCAGAGAGAGTACCATCCGTACCTGAGAATGTCACAGATCAGATTAGGCTGTGGGAAACAGATCTGAATAGGGTTGAGATGACTCCAGCTTATTATTACGATGAATTTCCAACCAGGGAACTCCTCGAGGGTGCTTCTGACTTTGCGCGAGGCTATAATGCTCTACTGTGGGAGGATGTAAACTCGAAAAAGATGCGTTTAGTGGTCAAGGCAGAAAACCACGTGCACATGCGAGAATATCTTGGACGTCAAAGGCAGTAA

Protein Analysis

455

Amino Acids

52.37

Weight (kDa)

6.25

Isoelectric Point (pI)

42.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 181
AatII GACGTC 1 cut(s) 1354
AbsI CCTCGAGG 1 cut(s) 1229
AccII CGCG 3 cut(s) 23, 1101, 1252
AciI CCGC 3 cut(s) 48, 57, 526
AclWI GGATC 3 cut(s) 23, 420, 777
AcoI YGGCCR 1 cut(s) 45
AcsI RAATTY 3 cut(s) 28, 954, 1208
AcuI CTGAAG 4 cut(s) 401, 782, 898, 1064
AcvI CACGTG 1 cut(s) 1327
AcyI GRCGYC 1 cut(s) 1351
AfaI GTAC 5 cut(s) 345, 620, 635, 1116, 1125
AfiI CCNNNNNNNGG 1 cut(s) 406
AflIII ACRYGT 1 cut(s) 1099
AgsI TTSAA 4 cut(s) 164, 251, 742, 1043
AjnI CCWGG 1 cut(s) 1217
AluBI AGCT 7 cut(s) 67, 76, 337, 405, 557, 861, 1193
AluI AGCT 7 cut(s) 67, 76, 337, 405, 557, 861, 1193
Alw21I GWGCWC 1 cut(s) 1332
Alw26I GTCTC 2 cut(s) 120, 220
Alw44I GTGCAC 1 cut(s) 1328
AlwI GGATC 3 cut(s) 23, 420, 777
Ama87I CYCGRG 1 cut(s) 1229
AoxI GGCC 2 cut(s) 45, 485
ApaLI GTGCAC 1 cut(s) 1328
ApeKI GCWGC 1 cut(s) 454
ApoI RAATTY 3 cut(s) 28, 954, 1208
Asp700I GAANNNNTTC 4 cut(s) 29, 89, 105, 518
AspLEI GCGC 1 cut(s) 1252
AsuHPI GGTGA 2 cut(s) 22, 184
AvaI CYCGRG 1 cut(s) 1229
AxyI CCTNAGG 1 cut(s) 6
BaeGI GKGCMC 1 cut(s) 1332
BbrPI CACGTG 1 cut(s) 1327
Bbv12I GWGCWC 1 cut(s) 1332
BbvI GCAGC 1 cut(s) 441
BccI CCATC 5 cut(s) 203, 385, 496, 589, 1126
BcgI CGANNNNNNTGC 2 cut(s) 1279, 1313
BciT130I CCWGG 1 cut(s) 1219
BciVI GTATCC 1 cut(s) 592
BclI TGATCA 1 cut(s) 789
BcoDI GTCTC 2 cut(s) 120, 220
BfaI CTAG 2 cut(s) 431, 692
BfmI CTRYAG 1 cut(s) 669
BfuI GTATCC 1 cut(s) 592
BglII AGATCT 1 cut(s) 1165
BisI GCNGC 2 cut(s) 48, 455
BlsI GCNGC 2 cut(s) 49, 456
Bme1390I CCNGG 1 cut(s) 1219
BmeT110I CYCGRG 1 cut(s) 1229
BmiI GGNNCC 1 cut(s) 398
BmrFI CCNGG 1 cut(s) 1219
BmsI GCATC 2 cut(s) 1059, 1287
BplI GAGNNNNNCTC 2 cut(s) 623, 655
BpmI CTGGAG 2 cut(s) 1077, 1173
BpuEI CTTGAG 2 cut(s) 314, 955
BsaAI YACGTR 1 cut(s) 1327
BsaHI GRCGYC 1 cut(s) 1351
BsaI GGTCTC 2 cut(s) 120, 220
BsaJI CCNNGG 1 cut(s) 1218
BsaWI WCCGGW 1 cut(s) 169
Bsc4I CCNNNNNNNGG 1 cut(s) 406
Bse1I ACTGG 2 cut(s) 583, 1060
Bse21I CCTNAGG 1 cut(s) 6
BseBI CCWGG 1 cut(s) 1219
BseDI CCNNGG 1 cut(s) 1218
BseGI GGATG 3 cut(s) 1093, 1118, 1285
BseLI CCNNNNNNNGG 1 cut(s) 406
BseMII CTCAG 4 cut(s) 20, 124, 660, 1119
BseNI ACTGG 2 cut(s) 583, 1060
BseRI GAGGAG 3 cut(s) 206, 665, 1217
BseSI GKGCMC 1 cut(s) 1332
BseXI GCAGC 1 cut(s) 441
Bsh1236I CGCG 3 cut(s) 23, 1101, 1252
BshFI GGCC 2 cut(s) 47, 487
BsiHKAI GWGCWC 1 cut(s) 1332
BsiHKCI CYCGRG 1 cut(s) 1229
BsiSI CCGG 1 cut(s) 170
BslFI GGGAC 1 cut(s) 798
BslI CCNNNNNNNGG 1 cut(s) 406
BsmAI GTCTC 2 cut(s) 120, 220
BsmFI GGGAC 1 cut(s) 798
BsmI GAATGC 3 cut(s) 89, 91, 1093
BsnI GGCC 2 cut(s) 47, 487
Bso31I GGTCTC 2 cut(s) 120, 220
BsoBI CYCGRG 1 cut(s) 1229
Bsp1286I GDGCHC 1 cut(s) 1332
Bsp143I GATC 7 cut(s) 15, 238, 412, 769, 789, 1141, 1165
Bsp68I TCGCGA 1 cut(s) 23
BspACI CCGC 3 cut(s) 48, 57, 526
BspANI GGCC 2 cut(s) 47, 487
BspCNI CTCAG 4 cut(s) 19, 123, 659, 1120
BspFNI CGCG 3 cut(s) 23, 1101, 1252
BspLI GGNNCC 1 cut(s) 398
BspMAI CTGCAG 1 cut(s) 673
BspPI GGATC 3 cut(s) 23, 420, 777
BspTNI GGTCTC 2 cut(s) 120, 220
BsrI ACTGG 2 cut(s) 583, 1060
BssECI CCNNGG 1 cut(s) 1218
BssMI GATC 7 cut(s) 15, 238, 412, 769, 789, 1141, 1165
BssNI GRCGYC 1 cut(s) 1351
Bst2UI CCWGG 1 cut(s) 1219
Bst4CI ACNGT 6 cut(s) 126, 153, 274, 391, 818, 1272
Bst6I CTCTTC 1 cut(s) 278
BstACI GRCGYC 1 cut(s) 1351
BstBAI YACGTR 1 cut(s) 1327
BstC8I GCNNGC 1 cut(s) 57
BstDEI CTNAG 6 cut(s) 6, 110, 132, 646, 698, 1128
BstF5I GGATG 3 cut(s) 1093, 1118, 1285
BstFNI CGCG 3 cut(s) 23, 1101, 1252
BstHHI GCGC 1 cut(s) 1252
BstKTI GATC 7 cut(s) 18, 241, 415, 772, 792, 1144, 1168
BstMAI GTCTC 2 cut(s) 120, 220
BstMBI GATC 7 cut(s) 15, 238, 412, 769, 789, 1141, 1165
BstMWI GCNNNNNNNGC 2 cut(s) 56, 73
BstNI CCWGG 1 cut(s) 1219
BstNSI RCATGY 1 cut(s) 1336
BstSCI CCNGG 1 cut(s) 1217
BstSFI CTRYAG 1 cut(s) 669
BstSLI GKGCMC 1 cut(s) 1332
BstUI CGCG 3 cut(s) 23, 1101, 1252
BstV1I GCAGC 1 cut(s) 441
BstX2I RGATCY 3 cut(s) 412, 769, 1165
BstXI CCANNNNNNTGG 1 cut(s) 187
BstYI RGATCY 3 cut(s) 412, 769, 1165
Bsu36I CCTNAGG 1 cut(s) 6
BsuI GTATCC 1 cut(s) 592
BsuRI GGCC 2 cut(s) 47, 487
BtgZI GCGATG 1 cut(s) 4
BtsCI GGATG 3 cut(s) 1093, 1118, 1285
BtsIMutI CAGTG 2 cut(s) 396, 1053
BtuMI TCGCGA 1 cut(s) 23
Cac8I GCNNGC 1 cut(s) 57
CfoI GCGC 1 cut(s) 1252
Csp6I GTAC 5 cut(s) 344, 619, 634, 1115, 1124
CviAII CATG 6 cut(s) 34, 40, 61, 347, 707, 1333
CviQI GTAC 5 cut(s) 344, 619, 634, 1115, 1124
DdeI CTNAG 6 cut(s) 6, 110, 132, 646, 698, 1128
DpnI GATC 7 cut(s) 17, 240, 414, 771, 791, 1143, 1167
DpnII GATC 7 cut(s) 15, 238, 412, 769, 789, 1141, 1165
DrdI GACNNNNNNGTC 1 cut(s) 181
DseDI GACNNNNNNGTC 1 cut(s) 181
EaeI YGGCCR 1 cut(s) 45
Eam1104I CTCTTC 1 cut(s) 278
EarI CTCTTC 1 cut(s) 278
Eco31I GGTCTC 2 cut(s) 120, 220
Eco57I CTGAAG 4 cut(s) 401, 782, 898, 1064
Eco72I CACGTG 1 cut(s) 1327
Eco81I CCTNAGG 1 cut(s) 6
Eco88I CYCGRG 1 cut(s) 1229
EcoRII CCWGG 1 cut(s) 1217
EcoT22I ATGCAT 1 cut(s) 91
FaeI CATG 6 cut(s) 37, 43, 64, 350, 710, 1336
FaqI GGGAC 1 cut(s) 798
FatI CATG 6 cut(s) 33, 39, 60, 346, 706, 1332
FauI CCCGC 2 cut(s) 64, 519
FbaI TGATCA 1 cut(s) 789
Fnu4HI GCNGC 2 cut(s) 48, 455
FokI GGATG 3 cut(s) 1080, 1105, 1292
Fsp4HI GCNGC 2 cut(s) 48, 455
FspBI CTAG 2 cut(s) 431, 692
GlaI GCGC 1 cut(s) 1251
GluI GCNGC 2 cut(s) 48, 455
GsuI CTGGAG 2 cut(s) 1077, 1173
HaeIII GGCC 2 cut(s) 47, 487
HapII CCGG 1 cut(s) 170
HhaI GCGC 1 cut(s) 1252
Hin1I GRCGYC 1 cut(s) 1351
Hin1II CATG 6 cut(s) 37, 43, 64, 350, 710, 1336
Hin6I GCGC 1 cut(s) 1250
HinP1I GCGC 1 cut(s) 1250
HindIII AAGCTT 3 cut(s) 65, 335, 403
HinfI GANTC 6 cut(s) 247, 538, 665, 869, 918, 1186
HpaII CCGG 1 cut(s) 170
HphI GGTGA 2 cut(s) 22, 184
Hpy166II GTNNAC 3 cut(s) 277, 1285, 1330
Hpy188I TCNGA 7 cut(s) 321, 629, 649, 917, 1146, 1170, 1243
Hpy188III TCNNGA 4 cut(s) 22, 206, 217, 331
Hpy8I GTNNAC 3 cut(s) 277, 1285, 1330
HpyAV CCTTC 1 cut(s) 801
HpyCH4III ACNGT 6 cut(s) 126, 153, 274, 391, 818, 1272
HpyCH4IV ACGT 3 cut(s) 961, 1326, 1351
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 73
HpyF3I CTNAG 6 cut(s) 6, 110, 132, 646, 698, 1128
HpySE526I ACGT 3 cut(s) 961, 1326, 1351
Hsp92I GRCGYC 1 cut(s) 1351
Hsp92II CATG 6 cut(s) 37, 43, 64, 350, 710, 1336
HspAI GCGC 1 cut(s) 1250
Ksp22I TGATCA 1 cut(s) 789
Kzo9I GATC 7 cut(s) 15, 238, 412, 769, 789, 1141, 1165
LmnI GCTCC 4 cut(s) 402, 562, 652, 1007
Lsp1109I GCAGC 1 cut(s) 441
LweI GCATC 2 cut(s) 1059, 1287
MaeI CTAG 2 cut(s) 431, 692
MaeII ACGT 3 cut(s) 961, 1326, 1351
MaeIII GTNAC 3 cut(s) 172, 709, 1135
MalI GATC 7 cut(s) 17, 240, 414, 771, 791, 1143, 1167
MboI GATC 7 cut(s) 15, 238, 412, 769, 789, 1141, 1165
MboII GAAGA 5 cut(s) 37, 295, 407, 766, 1070
MfeI CAATTG 2 cut(s) 234, 251
MflI RGATCY 3 cut(s) 412, 769, 1165
MhlI GDGCHC 1 cut(s) 1332
MluCI AATT 9 cut(s) 28, 105, 234, 251, 836, 941, 954, 1068, 1208
MluI ACGCGT 1 cut(s) 1099
MlyI GAGTC 4 cut(s) 547, 863, 912, 1180
MmeI TCCRAC 2 cut(s) 985, 1238
Mph1103I ATGCAT 1 cut(s) 91
MroXI GAANNNNTTC 4 cut(s) 29, 89, 105, 518
MseI TTAA 1 cut(s) 566
MslI CAYNNNNRTG 1 cut(s) 38
MspA1I CMGCKG 1 cut(s) 526
MspI CCGG 1 cut(s) 170
MspR9I CCNGG 1 cut(s) 1219
MunI CAATTG 2 cut(s) 234, 251
Mva1269I GAATGC 3 cut(s) 89, 91, 1093
MvaI CCWGG 1 cut(s) 1219
MvnI CGCG 3 cut(s) 23, 1101, 1252
MwoI GCNNNNNNNGC 2 cut(s) 56, 73
NdeII GATC 7 cut(s) 15, 238, 412, 769, 789, 1141, 1165
NlaIII CATG 6 cut(s) 37, 43, 64, 350, 710, 1336
NlaIV GGNNCC 1 cut(s) 398
NmuCI GTSAC 2 cut(s) 172, 1135
NruI TCGCGA 1 cut(s) 23
NsiI ATGCAT 1 cut(s) 91
NspI RCATGY 1 cut(s) 1336
PaeR7I CTCGAG 1 cut(s) 1229
PctI GAATGC 3 cut(s) 89, 91, 1093
PdmI GAANNNNTTC 4 cut(s) 29, 89, 105, 518
PfeI GAWTC 2 cut(s) 247, 665
PkrI GCNGC 2 cut(s) 49, 456
PleI GAGTC 4 cut(s) 546, 863, 912, 1180
PmaCI CACGTG 1 cut(s) 1327
PmlI CACGTG 1 cut(s) 1327
PpsI GAGTC 4 cut(s) 546, 863, 912, 1180
Ppu21I YACGTR 1 cut(s) 1327
Psp6I CCWGG 1 cut(s) 1217
PspCI CACGTG 1 cut(s) 1327
PspGI CCWGG 1 cut(s) 1217
PspN4I GGNNCC 1 cut(s) 398
PspXI VCTCGAGB 1 cut(s) 1229
PstI CTGCAG 1 cut(s) 673
PsuI RGATCY 3 cut(s) 412, 769, 1165
RruI TCGCGA 1 cut(s) 23
RsaI GTAC 5 cut(s) 345, 620, 635, 1116, 1125
RsaNI GTAC 5 cut(s) 344, 619, 634, 1115, 1124
RseI CAYNNNNRTG 1 cut(s) 38
SaqAI TTAA 1 cut(s) 566
SatI GCNGC 2 cut(s) 48, 455
Sau3AI GATC 7 cut(s) 15, 238, 412, 769, 789, 1141, 1165
SchI GAGTC 4 cut(s) 547, 863, 912, 1180
ScrFI CCNGG 1 cut(s) 1219
SduI GDGCHC 1 cut(s) 1332
SfaNI GCATC 2 cut(s) 1059, 1287
SfcI CTRYAG 1 cut(s) 669
Sfr274I CTCGAG 1 cut(s) 1229
SlaI CTCGAG 1 cut(s) 1229
SmiMI CAYNNNNRTG 1 cut(s) 38
SmlI CTYRAG 3 cut(s) 329, 970, 1229
SmoI CTYRAG 3 cut(s) 329, 970, 1229
Sse9I AATT 9 cut(s) 28, 105, 234, 251, 836, 941, 954, 1068, 1208
SsiI CCGC 3 cut(s) 48, 57, 526
SspI AATATT 1 cut(s) 261
SspMI CTAG 2 cut(s) 431, 692
StyD4I CCNGG 1 cut(s) 1217
TaaI ACNGT 6 cut(s) 126, 153, 274, 391, 818, 1272
TaiI ACGT 3 cut(s) 964, 1329, 1354
TaqI TCGA 5 cut(s) 218, 491, 878, 1230, 1289
TasI AATT 9 cut(s) 28, 105, 234, 251, 836, 941, 954, 1068, 1208
TatI WGTACW 1 cut(s) 633
TauI GCSGC 1 cut(s) 50
TfiI GAWTC 2 cut(s) 247, 665
Tru1I TTAA 1 cut(s) 566
Tru9I TTAA 1 cut(s) 566
TscAI CASTG 2 cut(s) 396, 1060
TseFI GTSAC 2 cut(s) 172, 1135
TseI GCWGC 1 cut(s) 454
Tsp45I GTSAC 2 cut(s) 172, 1135
TspDTI ATGAA 6 cut(s) 22, 77, 82, 527, 695, 1221
TspGWI ACGGA 1 cut(s) 1111
TspRI CASTG 2 cut(s) 396, 1060
VneI GTGCAC 1 cut(s) 1328
XapI RAATTY 3 cut(s) 28, 954, 1208
XceI RCATGY 1 cut(s) 1336
XhoI CTCGAG 1 cut(s) 1229
XmnI GAANNNNTTC 4 cut(s) 29, 89, 105, 518
XspI CTAG 2 cut(s) 431, 692
ZraI GACGTC 1 cut(s) 1352
Zsp2I ATGCAT 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.