FvH4_3g09430

Component of the core-TFIIH basal transcription factor involved in nucleotide excision repair (NER) of DNA

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
5497014 .. 5501137
4124 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g09430.t1

Sequence Viewer

Length: 1362 bp
ATGCCTGAGGTGAGGATAATAGCGAAGAACTTCATGGACATGGTGGCCGCCTTGCCCGCCATGAAGCTCGATAAGCTCTACGACAACTCCTTCATCTGCGAAGCCATTCTCAGGTCTCTTCCGCCATTGGCTAAGAAATACGTGCTGCAAATGCTGTGCGTGGAGTTTCCGGTCAACTCGAAGTCAATGGAGGAGTGGGTGCTGCCGGATGGGGCCTCCAAGCATCGGGTTGCTGTTGATCGCTTGGTTCAGTTGAGAATATTCACTGAGACCAGGAAGAAGGGGGATGTTACGTATACATTGAATCCGATATTTCAAACTAATCTCAACAAGCTCCTGGTCTACGGTGTAGTTTTGCCAAGAGAACCAATGCCTTCGAATGTCACAGTGAGGCTCCCGAGCTCAGAGGAGCTTGAGGCTTTTGCCCTAGAACAATGGGAGTGTTTCTTGCTGCAACTTATCAACTCATCTCAAACTGATAGGCCGTCGAACATCAGTTCTTCTATGATGAAAACTTTCCAGCGGGGTCTTGTGACTCAAAGAGATAGAGAAGCTCCTAGGTTAACTGAAAGTGGTTTTCAATTCTTGCTAATGGATACAAATGCACAACTTTGGTACATCATCAGAGAATATATCACTAGCTCGGAGGAGCGTGGGATAGATTCAGCAGATTTGATTGCATTCCTGCTAGAGCTAAGTTTTCATGTTACAGGCGAGGCATATAACATAAATACATTGACTGAGCTTCAGAAGAATACGATCAAGGACTTCACAGATTTGGGATTGGTCAAACTTCAGCAGGGCAGGAAGGAGAGTTGGTTTATACCTACTAAACTAGCTACTAATCTTTCTGTGAGCTTGACAGACACATCATCGAGGAAACAGGGATTTGTAGTTGTGGAAACAAACTTTAGGCTGTATGCCTACTCCTCATCTAAATTGCATTGTGAAATTTTGCGTCTTTTTGCAAGGGTAGAATATCAACTTCCAAACCTCATAGTTGGAGCAATAACAAAAGAAAGTTTGTATGGTGCTTTTGACAATTGCATCACTGCAGAACAGATAATTTCTTTTCTAAAGCAAAATGCACATCCACGTGTTGCGGAGAGGATACCATCTGTACCTGAGAATGTCACGGATCAGATTAGGCTCTGGGAAACTGATCTAAACAGAGTTGAGATGACTAATGCATATATATACGATGAATTTCCATCCAGGGATCTCTTTGACGGTGCTGTTGACTATGCGAGAAGCTACAATGGTTTGCTATGGGAGGCTCCAGATGATTCAAAAAAGATGCGTTTGGTGGTCAGGTCTGAAAACCATGTTCACATGCGAGAATATCTTTCGGGTCAAAAGTAG

Protein Analysis

454

Amino Acids

52.06

Weight (kDa)

5.86

Isoelectric Point (pI)

38.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tfb2 PF03849 14 - 365 9.3e-113 Transcription factor Tfb2
Tfb2_C PF18307 380 - 449 3.8e-20 Transcription factor Tfb2 (p52) C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 296, 342
AciI CCGC 5 cut(s) 48, 57, 122, 523, 1103
AclWI GGATC 2 cut(s) 1146, 1227
AcoI YGGCCR 1 cut(s) 45
AcsI RAATTY 2 cut(s) 951, 1205
AcuI CTGAAG 2 cut(s) 731, 779
AcvI CACGTG 1 cut(s) 1097
AfaI GTAC 2 cut(s) 617, 1122
AfiI CCNNNNNNNGG 2 cut(s) 111, 225
AflIII ACRYGT 1 cut(s) 1096
AgsI TTSAA 4 cut(s) 304, 317, 581, 1290
AjnI CCWGG 3 cut(s) 272, 336, 1214
Alw21I GWGCWC 1 cut(s) 404
Alw26I GTCTC 2 cut(s) 120, 263
AlwI GGATC 2 cut(s) 1146, 1227
Ama87I CYCGRG 1 cut(s) 397
AoxI GGCC 3 cut(s) 45, 213, 482
ApeKI GCWGC 3 cut(s) 145, 202, 451
ApoI RAATTY 2 cut(s) 951, 1205
Asp700I GAANNNNTTC 3 cut(s) 29, 105, 515
AspA2I CCTAGG 1 cut(s) 557
AspS9I GGNCC 1 cut(s) 213
AsuHPI GGTGA 1 cut(s) 22
AsuII TTCGAA 1 cut(s) 377
AvaI CYCGRG 1 cut(s) 397
AvrII CCTAGG 1 cut(s) 557
AxyI CCTNAGG 1 cut(s) 6
BanII GRGCYC 1 cut(s) 404
BbrPI CACGTG 1 cut(s) 1097
Bbv12I GWGCWC 1 cut(s) 404
BbvI GCAGC 3 cut(s) 132, 189, 438
BccI CCATC 3 cut(s) 203, 1123, 1219
BceAI ACGGC 1 cut(s) 469
BciT130I CCWGG 3 cut(s) 274, 338, 1216
BciVI GTATCC 2 cut(s) 589, 1104
BcoDI GTCTC 2 cut(s) 120, 263
BfaI CTAG 5 cut(s) 428, 558, 639, 689, 836
BfmI CTRYAG 1 cut(s) 1053
BfuI GTATCC 2 cut(s) 589, 1104
BisI GCNGC 4 cut(s) 48, 146, 203, 452
BlnI CCTAGG 1 cut(s) 557
BlsI GCNGC 4 cut(s) 49, 147, 204, 453
Bme1390I CCNGG 3 cut(s) 274, 338, 1216
BmeT110I CYCGRG 1 cut(s) 397
BmgT120I GGNCC 1 cut(s) 213
BmiI GGNNCC 3 cut(s) 214, 395, 1278
BmrFI CCNGG 3 cut(s) 274, 338, 1216
BmsI GCATC 3 cut(s) 232, 1056, 1287
BpmI CTGGAG 1 cut(s) 1263
Bpu14I TTCGAA 1 cut(s) 377
BpuEI CTTGAG 1 cut(s) 434
BsaAI YACGTR 3 cut(s) 142, 294, 1097
BsaI GGTCTC 2 cut(s) 120, 263
BsaJI CCNNGG 2 cut(s) 557, 1215
BsaWI WCCGGW 1 cut(s) 169
BsaXI ACNNNNNCTCC 4 cut(s) 71, 101, 803, 833
Bsc4I CCNNNNNNNGG 2 cut(s) 111, 225
Bse21I CCTNAGG 1 cut(s) 6
BseBI CCWGG 3 cut(s) 274, 338, 1216
BseDI CCNNGG 2 cut(s) 557, 1215
BseGI GGATG 4 cut(s) 214, 292, 1090, 1211
BseLI CCNNNNNNNGG 2 cut(s) 111, 225
BseMII CTCAG 5 cut(s) 124, 258, 417, 732, 1116
BseRI GAGGAG 4 cut(s) 206, 422, 662, 919
BseXI GCAGC 3 cut(s) 132, 189, 438
BshFI GGCC 3 cut(s) 47, 215, 484
BsiHKAI GWGCWC 1 cut(s) 404
BsiHKCI CYCGRG 1 cut(s) 397
BsiSI CCGG 2 cut(s) 170, 206
BslI CCNNNNNNNGG 2 cut(s) 111, 225
BsmAI GTCTC 2 cut(s) 120, 263
BsmI GAATGC 1 cut(s) 680
BsnI GGCC 3 cut(s) 47, 215, 484
Bso31I GGTCTC 2 cut(s) 120, 263
BsoBI CYCGRG 1 cut(s) 397
Bsp119I TTCGAA 1 cut(s) 377
Bsp1286I GDGCHC 1 cut(s) 404
Bsp143I GATC 5 cut(s) 238, 759, 1138, 1162, 1219
BspACI CCGC 5 cut(s) 48, 57, 122, 523, 1103
BspANI GGCC 3 cut(s) 47, 215, 484
BspCNI CTCAG 5 cut(s) 123, 259, 416, 733, 1117
BspLI GGNNCC 3 cut(s) 214, 395, 1278
BspMAI CTGCAG 1 cut(s) 1057
BspPI GGATC 2 cut(s) 1146, 1227
BspT104I TTCGAA 1 cut(s) 377
BspTNI GGTCTC 2 cut(s) 120, 263
BssECI CCNNGG 2 cut(s) 557, 1215
BssMI GATC 5 cut(s) 238, 759, 1138, 1162, 1219
BssNAI GTATAC 1 cut(s) 297
BssT1I CCWWGG 1 cut(s) 557
Bst1107I GTATAC 1 cut(s) 297
Bst2UI CCWGG 3 cut(s) 274, 338, 1216
Bst4CI ACNGT 3 cut(s) 347, 388, 1232
Bst6I CTCTTC 1 cut(s) 123
BstBAI YACGTR 3 cut(s) 142, 294, 1097
BstBI TTCGAA 1 cut(s) 377
BstC8I GCNNGC 1 cut(s) 57
BstDEI CTNAG 8 cut(s) 6, 110, 132, 267, 403, 695, 741, 1125
BstF5I GGATG 4 cut(s) 214, 292, 1090, 1211
BstKTI GATC 5 cut(s) 241, 762, 1141, 1165, 1222
BstMAI GTCTC 2 cut(s) 120, 263
BstMBI GATC 5 cut(s) 238, 759, 1138, 1162, 1219
BstMWI GCNNNNNNNGC 3 cut(s) 56, 73, 151
BstNI CCWGG 3 cut(s) 274, 338, 1216
BstNSI RCATGY 1 cut(s) 1336
BstSCI CCNGG 3 cut(s) 272, 336, 1214
BstSFI CTRYAG 1 cut(s) 1053
BstSNI TACGTA 1 cut(s) 294
BstV1I GCAGC 3 cut(s) 132, 189, 438
BstX2I RGATCY 1 cut(s) 1219
BstYI RGATCY 1 cut(s) 1219
BstZ17I GTATAC 1 cut(s) 297
Bsu36I CCTNAGG 1 cut(s) 6
BsuI GTATCC 2 cut(s) 589, 1104
BsuRI GGCC 3 cut(s) 47, 215, 484
BtsCI GGATG 4 cut(s) 214, 292, 1090, 1211
BtsI GCAGTG 1 cut(s) 1050
BtsIMutI CAGTG 3 cut(s) 264, 393, 1050
Cac8I GCNNGC 1 cut(s) 57
Cfr13I GGNCC 1 cut(s) 213
CseI GACGC 1 cut(s) 947
Csp6I GTAC 2 cut(s) 616, 1121
CviAII CATG 6 cut(s) 34, 40, 61, 704, 1325, 1333
CviQI GTAC 2 cut(s) 616, 1121
DdeI CTNAG 8 cut(s) 6, 110, 132, 267, 403, 695, 741, 1125
DpnI GATC 5 cut(s) 240, 761, 1140, 1164, 1221
DpnII GATC 5 cut(s) 238, 759, 1138, 1162, 1219
EaeI YGGCCR 1 cut(s) 45
Eam1104I CTCTTC 1 cut(s) 123
EarI CTCTTC 1 cut(s) 123
EciI GGCGGA 1 cut(s) 111
Ecl136II GAGCTC 1 cut(s) 402
Eco105I TACGTA 1 cut(s) 294
Eco130I CCWWGG 1 cut(s) 557
Eco24I GRGCYC 1 cut(s) 404
Eco31I GGTCTC 2 cut(s) 120, 263
Eco53kI GAGCTC 1 cut(s) 402
Eco57I CTGAAG 2 cut(s) 731, 779
Eco72I CACGTG 1 cut(s) 1097
Eco81I CCTNAGG 1 cut(s) 6
Eco88I CYCGRG 1 cut(s) 397
EcoICRI GAGCTC 1 cut(s) 402
EcoO109I RGGNCCY 1 cut(s) 213
EcoRII CCWGG 3 cut(s) 272, 336, 1214
EcoT14I CCWWGG 1 cut(s) 557
EcoT22I ATGCAT 1 cut(s) 1192
EcoT38I GRGCYC 1 cut(s) 404
ErhI CCWWGG 1 cut(s) 557
FaeI CATG 6 cut(s) 37, 43, 64, 707, 1328, 1336
FatI CATG 6 cut(s) 33, 39, 60, 703, 1324, 1332
FauI CCCGC 2 cut(s) 64, 516
FblI GTMKAC 2 cut(s) 296, 342
Fnu4HI GCNGC 4 cut(s) 48, 146, 203, 452
FokI GGATG 4 cut(s) 221, 299, 1077, 1198
FriOI GRGCYC 1 cut(s) 404
Fsp4HI GCNGC 4 cut(s) 48, 146, 203, 452
FspBI CTAG 5 cut(s) 428, 558, 639, 689, 836
GluI GCNGC 4 cut(s) 48, 146, 203, 452
GsuI CTGGAG 1 cut(s) 1263
HaeIII GGCC 3 cut(s) 47, 215, 484
HapII CCGG 2 cut(s) 170, 206
HgaI GACGC 1 cut(s) 947
Hin1II CATG 6 cut(s) 37, 43, 64, 707, 1328, 1336
HincII GTYRAC 3 cut(s) 175, 564, 1240
HindII GTYRAC 3 cut(s) 175, 564, 1240
HinfI GANTC 4 cut(s) 304, 535, 662, 1286
HpaI GTTAAC 1 cut(s) 564
HpaII CCGG 2 cut(s) 170, 206
HphI GGTGA 1 cut(s) 22
Hpy166II GTNNAC 6 cut(s) 175, 297, 343, 564, 1240, 1330
Hpy188I TCNGA 7 cut(s) 309, 406, 626, 646, 750, 1143, 1318
Hpy188III TCNNGA 2 cut(s) 397, 1280
Hpy8I GTNNAC 6 cut(s) 175, 297, 343, 564, 1240, 1330
Hpy99I CGWCG 1 cut(s) 490
HpyAV CCTTC 4 cut(s) 100, 274, 384, 802
HpyCH4III ACNGT 3 cut(s) 347, 388, 1232
HpyCH4IV ACGT 3 cut(s) 141, 293, 1096
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 73, 151
HpyF3I CTNAG 8 cut(s) 6, 110, 132, 267, 403, 695, 741, 1125
HpySE526I ACGT 3 cut(s) 141, 293, 1096
Hsp92II CATG 6 cut(s) 37, 43, 64, 707, 1328, 1336
KspAI GTTAAC 1 cut(s) 564
Kzo9I GATC 5 cut(s) 238, 759, 1138, 1162, 1219
LmnI GCTCC 7 cut(s) 339, 399, 409, 559, 649, 1004, 1282
Lsp1109I GCAGC 3 cut(s) 132, 189, 438
LweI GCATC 3 cut(s) 232, 1056, 1287
MaeI CTAG 5 cut(s) 428, 558, 639, 689, 836
MaeII ACGT 3 cut(s) 141, 293, 1096
MaeIII GTNAC 5 cut(s) 289, 382, 532, 706, 1132
MalI GATC 5 cut(s) 240, 761, 1140, 1164, 1221
MboI GATC 5 cut(s) 238, 759, 1138, 1162, 1219
MboII GAAGA 5 cut(s) 37, 110, 289, 492, 763
MfeI CAATTG 1 cut(s) 1042
MflI RGATCY 1 cut(s) 1219
MhlI GDGCHC 1 cut(s) 404
MluCI AATT 6 cut(s) 581, 938, 951, 1042, 1065, 1205
MlyI GAGTC 1 cut(s) 529
MmeI TCCRAC 1 cut(s) 982
Mph1103I ATGCAT 1 cut(s) 1192
MroXI GAANNNNTTC 3 cut(s) 29, 105, 515
MseI TTAA 1 cut(s) 563
MslI CAYNNNNRTG 2 cut(s) 38, 1095
MspA1I CMGCKG 1 cut(s) 523
MspI CCGG 2 cut(s) 170, 206
MspR9I CCNGG 3 cut(s) 274, 338, 1216
MunI CAATTG 1 cut(s) 1042
Mva1269I GAATGC 1 cut(s) 680
MvaI CCWGG 3 cut(s) 274, 338, 1216
MwoI GCNNNNNNNGC 3 cut(s) 56, 73, 151
NdeII GATC 5 cut(s) 238, 759, 1138, 1162, 1219
NlaIII CATG 6 cut(s) 37, 43, 64, 707, 1328, 1336
NlaIV GGNNCC 3 cut(s) 214, 395, 1278
NmuCI GTSAC 3 cut(s) 382, 532, 1132
NsiI ATGCAT 1 cut(s) 1192
NspI RCATGY 1 cut(s) 1336
NspV TTCGAA 1 cut(s) 377
PctI GAATGC 1 cut(s) 680
PdmI GAANNNNTTC 3 cut(s) 29, 105, 515
PfeI GAWTC 3 cut(s) 304, 662, 1286
PkrI GCNGC 4 cut(s) 49, 147, 204, 453
PleI GAGTC 1 cut(s) 529
PmaCI CACGTG 1 cut(s) 1097
PmlI CACGTG 1 cut(s) 1097
PpsI GAGTC 1 cut(s) 529
Ppu21I YACGTR 3 cut(s) 142, 294, 1097
Psp124BI GAGCTC 1 cut(s) 404
Psp6I CCWGG 3 cut(s) 272, 336, 1214
PspCI CACGTG 1 cut(s) 1097
PspGI CCWGG 3 cut(s) 272, 336, 1214
PspN4I GGNNCC 3 cut(s) 214, 395, 1278
PspPI GGNCC 1 cut(s) 213
PstI CTGCAG 1 cut(s) 1057
PsuI RGATCY 1 cut(s) 1219
RsaI GTAC 2 cut(s) 617, 1122
RsaNI GTAC 2 cut(s) 616, 1121
RseI CAYNNNNRTG 2 cut(s) 38, 1095
SacI GAGCTC 1 cut(s) 404
SaqAI TTAA 1 cut(s) 563
SatI GCNGC 4 cut(s) 48, 146, 203, 452
Sau3AI GATC 5 cut(s) 238, 759, 1138, 1162, 1219
Sau96I GGNCC 1 cut(s) 213
SchI GAGTC 1 cut(s) 529
ScrFI CCNGG 3 cut(s) 274, 338, 1216
SduI GDGCHC 1 cut(s) 404
SfaNI GCATC 3 cut(s) 232, 1056, 1287
SfcI CTRYAG 1 cut(s) 1053
SfuI TTCGAA 1 cut(s) 377
SmiMI CAYNNNNRTG 2 cut(s) 38, 1095
SmlI CTYRAG 1 cut(s) 413
SmoI CTYRAG 1 cut(s) 413
SnaBI TACGTA 1 cut(s) 294
Sse9I AATT 6 cut(s) 581, 938, 951, 1042, 1065, 1205
SsiI CCGC 5 cut(s) 48, 57, 122, 523, 1103
SspI AATATT 1 cut(s) 261
SspMI CTAG 5 cut(s) 428, 558, 639, 689, 836
SstI GAGCTC 1 cut(s) 404
StyD4I CCNGG 3 cut(s) 272, 336, 1214
StyI CCWWGG 1 cut(s) 557
TaaI ACNGT 3 cut(s) 347, 388, 1232
TaiI ACGT 3 cut(s) 144, 296, 1099
TaqI TCGA 5 cut(s) 69, 179, 377, 488, 875
TasI AATT 6 cut(s) 581, 938, 951, 1042, 1065, 1205
TauI GCSGC 1 cut(s) 50
TfiI GAWTC 3 cut(s) 304, 662, 1286
Tru1I TTAA 1 cut(s) 563
Tru9I TTAA 1 cut(s) 563
TscAI CASTG 3 cut(s) 271, 393, 1057
TseFI GTSAC 3 cut(s) 382, 532, 1132
TseI GCWGC 3 cut(s) 145, 202, 451
Tsp45I GTSAC 3 cut(s) 382, 532, 1132
TspDTI ATGAA 6 cut(s) 22, 77, 82, 524, 692, 1218
TspGWI ACGGA 1 cut(s) 1151
TspRI CASTG 3 cut(s) 271, 393, 1057
XapI RAATTY 2 cut(s) 951, 1205
XceI RCATGY 1 cut(s) 1336
XmaJI CCTAGG 1 cut(s) 557
XmiI GTMKAC 2 cut(s) 296, 342
XmnI GAANNNNTTC 3 cut(s) 29, 105, 515
XspI CTAG 5 cut(s) 428, 558, 639, 689, 836
Zsp2I ATGCAT 1 cut(s) 1192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.