Rh5CG068500

Component of the core-TFIIH basal transcription factor involved in nucleotide excision repair (NER) of DNA

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Reverse (-)
5143634 .. 5148250
4617 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG068500.1

Sequence Viewer

Length: 1362 bp
ATGCCTCAGGTGAGGATCATAGCGAAGAACTTCATGGACATGGTGGCTGCCTTGCCCGCCATGAAGCTCGATAAGCTCTACGACAACTCATTCATCTGCGAAGCCATTCTCAGGTCTCTGCCACCACTGGCCAAGAAATATGTTTTGCAAATGCTATGCGTCGAGCTTCCCGTCAATTCCAAGTCAATGGAGGAGTGGGTGCTGCCTGATGGGGCCTCCAAGCATCGAGTGGCGATTGATCGATTGGTTCAATTGAGAATATTCACCGAGACCAAGAAGAAGGGGGATGTTACATATACATTGAATCCTATATTTCAGACTAATCTCAAGAAGCTTCTGGTATATGGTGTAGTTTTGCCAAGAGAACCAATGCCTTCGAGTGTCACAGTGAGGCGTCCAAGCTCTGAGGAACTTGAGGCTTTTGCTCTAGAACAATGGGAGTGTTTCTTGCTCCAACTTATCAACTCATCTCAAACTGAAAGGCCGTCAAACATCAGTTCCTCTATGATGAAAACTTTCCAGCGGGGTCTTGTCACTCAAAGAGATAGAGAAGCCCCTAGGTTAACTGAAAGTGGTTTCCAGTTCTTGCTGATGGATACAAATGCACAACTTTGGTACATCATCAGAGAATATATCACTAGCTCGGAGGAGCGTGGGATCGATTCGGCGGATTTGATTTCATTCCTGCTAGAGCTAAGTTTTCATGTTACAGGCGAGGCATATAACATAAATACATTGACTGAGGTTCAGAAAAATACGATCAAGGACTTCACAGATTTGGGATTGGTCAAACTTCAGCAGGGTAGGAAAGAGAGTTGGTTTATACCTACTAAATTAGCTACTAATCTTTCGGTGAGCTTGACAGACACATCATCAAGGAAACAGGGATTTGTGGTTGTGGAAACAAACTTTAGGCTCTATGCATACTCATCATCAAAATTGCATTGTGAAATTTTGCGTCTTTTCGCAAGGATAGAATATCAACTTCCGAACCTTATAGTTGGGGCAATAACAAAAGAAAGTCTGTATGGTGCTTTTGACAATTGCATCACTGCAGAACAGATAATTTCTTTTCTTCAGCAAAATGCACATCCACGTGTTGCGGAGAGAATACCATCTGTACCTGAGAATGTCACGGATCAGATCAGGCTCTGGGAAACTGATTTAAACAGAGTTGAGATGACTACTGCATATTATTACGATGAATTTCCATCCAGGGATCTCTTTGACGGTGCTGTTGACTATGCGAGAAGCTATAATGGTTTGTTATGGGAGGCTCCAGATGATTCAAAAAAGATGCGTTTGGTGGTCAGGGCCGAAAACCACGGGCACATGCGAGAATATCTTTCCGGTCAAAAGTAG

Protein Analysis

453

Amino Acids

52.05

Weight (kDa)

6.17

Isoelectric Point (pI)

40.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tfb2 PF03849 14 - 365 3.3e-114 Transcription factor Tfb2
Tfb2_C PF18307 380 - 449 1.9e-20 Transcription factor Tfb2 (p52) C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 57, 523, 668, 1103
AclWI GGATC 4 cut(s) 23, 665, 1146, 1227
AcoI YGGCCR 1 cut(s) 129
AcsI RAATTY 2 cut(s) 951, 1205
AcuI CTGAAG 2 cut(s) 779, 1061
AcvI CACGTG 1 cut(s) 1097
AcyI GRCGYC 1 cut(s) 394
AfaI GTAC 2 cut(s) 617, 1122
AfiI CCNNNNNNNGG 1 cut(s) 111
AflIII ACRYGT 1 cut(s) 1096
AgsI TTSAA 3 cut(s) 251, 304, 1290
AjnI CCWGG 1 cut(s) 1214
Alw26I GTCTC 2 cut(s) 120, 263
AlwI GGATC 4 cut(s) 23, 665, 1146, 1227
AlwNI CAGNNNCTG 1 cut(s) 1152
AoxI GGCC 4 cut(s) 129, 213, 482, 1314
ApeKI GCWGC 2 cut(s) 47, 202
ApoI RAATTY 2 cut(s) 951, 1205
Asp700I GAANNNNTTC 3 cut(s) 29, 105, 515
AspA2I CCTAGG 1 cut(s) 557
AspS9I GGNCC 2 cut(s) 213, 1314
AsuHPI GGTGA 3 cut(s) 22, 256, 865
AvrII CCTAGG 1 cut(s) 557
AxyI CCTNAGG 1 cut(s) 6
BaeGI GKGCMC 1 cut(s) 1332
BalI TGGCCA 1 cut(s) 131
BbrPI CACGTG 1 cut(s) 1097
BbvI GCAGC 2 cut(s) 34, 189
BccI CCATC 4 cut(s) 203, 586, 1123, 1219
BceAI ACGGC 1 cut(s) 469
BciT130I CCWGG 1 cut(s) 1216
BciVI GTATCC 1 cut(s) 589
BcoDI GTCTC 2 cut(s) 120, 263
BfaI CTAG 4 cut(s) 428, 558, 639, 689
BfmI CTRYAG 1 cut(s) 1053
BfuI GTATCC 1 cut(s) 589
BisI GCNGC 2 cut(s) 48, 203
BlnI CCTAGG 1 cut(s) 557
BlsI GCNGC 2 cut(s) 49, 204
Bme1390I CCNGG 1 cut(s) 1216
BmgT120I GGNCC 2 cut(s) 213, 1314
BmiI GGNNCC 2 cut(s) 214, 1278
BmrFI CCNGG 1 cut(s) 1216
BmsI GCATC 3 cut(s) 232, 1056, 1287
BpmI CTGGAG 1 cut(s) 1263
BpuEI CTTGAG 2 cut(s) 311, 434
Bsa29I ATCGAT 2 cut(s) 241, 660
BsaAI YACGTR 1 cut(s) 1097
BsaHI GRCGYC 1 cut(s) 394
BsaI GGTCTC 2 cut(s) 120, 263
BsaJI CCNNGG 3 cut(s) 557, 1215, 1324
BsaWI WCCGGW 1 cut(s) 1349
Bsc4I CCNNNNNNNGG 1 cut(s) 111
Bse1I ACTGG 2 cut(s) 132, 580
Bse21I CCTNAGG 1 cut(s) 6
BseBI CCWGG 1 cut(s) 1216
BseCI ATCGAT 2 cut(s) 241, 660
BseDI CCNNGG 3 cut(s) 557, 1215, 1324
BseGI GGATG 3 cut(s) 292, 1090, 1211
BseLI CCNNNNNNNGG 1 cut(s) 111
BseMII CTCAG 5 cut(s) 20, 124, 396, 732, 1116
BseNI ACTGG 2 cut(s) 132, 580
BseRI GAGGAG 2 cut(s) 206, 662
BseSI GKGCMC 1 cut(s) 1332
BseXI GCAGC 2 cut(s) 34, 189
BshFI GGCC 4 cut(s) 131, 215, 484, 1316
BshVI ATCGAT 2 cut(s) 241, 660
BsiSI CCGG 1 cut(s) 1350
BslI CCNNNNNNNGG 1 cut(s) 111
BsmAI GTCTC 2 cut(s) 120, 263
BsnI GGCC 4 cut(s) 131, 215, 484, 1316
Bso31I GGTCTC 2 cut(s) 120, 263
Bsp1286I GDGCHC 1 cut(s) 1332
Bsp143I GATC 7 cut(s) 15, 238, 657, 759, 1138, 1143, 1219
BspACI CCGC 4 cut(s) 57, 523, 668, 1103
BspANI GGCC 4 cut(s) 131, 215, 484, 1316
BspCNI CTCAG 5 cut(s) 19, 123, 397, 733, 1117
BspDI ATCGAT 2 cut(s) 241, 660
BspLI GGNNCC 2 cut(s) 214, 1278
BspMAI CTGCAG 1 cut(s) 1057
BspPI GGATC 4 cut(s) 23, 665, 1146, 1227
BspTNI GGTCTC 2 cut(s) 120, 263
BsrI ACTGG 2 cut(s) 132, 580
BssECI CCNNGG 3 cut(s) 557, 1215, 1324
BssMI GATC 7 cut(s) 15, 238, 657, 759, 1138, 1143, 1219
BssNI GRCGYC 1 cut(s) 394
BssT1I CCWWGG 1 cut(s) 557
Bst2UI CCWGG 1 cut(s) 1216
Bst4CI ACNGT 2 cut(s) 388, 1232
BstACI GRCGYC 1 cut(s) 394
BstBAI YACGTR 1 cut(s) 1097
BstC8I GCNNGC 1 cut(s) 57
BstDEI CTNAG 6 cut(s) 6, 110, 405, 695, 741, 1125
BstDSI CCRYGG 1 cut(s) 1324
BstF5I GGATG 3 cut(s) 292, 1090, 1211
BstKTI GATC 7 cut(s) 18, 241, 660, 762, 1141, 1146, 1222
BstMAI GTCTC 2 cut(s) 120, 263
BstMBI GATC 7 cut(s) 15, 238, 657, 759, 1138, 1143, 1219
BstMWI GCNNNNNNNGC 2 cut(s) 56, 73
BstNI CCWGG 1 cut(s) 1216
BstNSI RCATGY 1 cut(s) 1336
BstSCI CCNGG 1 cut(s) 1214
BstSFI CTRYAG 1 cut(s) 1053
BstSLI GKGCMC 1 cut(s) 1332
BstV1I GCAGC 2 cut(s) 34, 189
BstX2I RGATCY 1 cut(s) 1219
BstXI CCANNNNNNTGG 1 cut(s) 187
BstYI RGATCY 1 cut(s) 1219
Bsu15I ATCGAT 2 cut(s) 241, 660
Bsu36I CCTNAGG 1 cut(s) 6
BsuI GTATCC 1 cut(s) 589
BsuRI GGCC 4 cut(s) 131, 215, 484, 1316
BsuTUI ATCGAT 2 cut(s) 241, 660
BtgI CCRYGG 1 cut(s) 1324
BtsCI GGATG 3 cut(s) 292, 1090, 1211
BtsI GCAGTG 1 cut(s) 1050
BtsIMutI CAGTG 3 cut(s) 125, 393, 1050
Cac8I GCNNGC 1 cut(s) 57
CaiI CAGNNNCTG 1 cut(s) 1152
Cfr13I GGNCC 2 cut(s) 213, 1314
ClaI ATCGAT 2 cut(s) 241, 660
CseI GACGC 3 cut(s) 148, 383, 947
Csp6I GTAC 2 cut(s) 616, 1121
CviAII CATG 5 cut(s) 34, 40, 61, 704, 1333
CviQI GTAC 2 cut(s) 616, 1121
DdeI CTNAG 6 cut(s) 6, 110, 405, 695, 741, 1125
DpnI GATC 7 cut(s) 17, 240, 659, 761, 1140, 1145, 1221
DpnII GATC 7 cut(s) 15, 238, 657, 759, 1138, 1143, 1219
DraI TTTAAA 1 cut(s) 1167
EaeI YGGCCR 1 cut(s) 129
EciI GGCGGA 1 cut(s) 683
Eco130I CCWWGG 1 cut(s) 557
Eco31I GGTCTC 2 cut(s) 120, 263
Eco57I CTGAAG 2 cut(s) 779, 1061
Eco72I CACGTG 1 cut(s) 1097
Eco81I CCTNAGG 1 cut(s) 6
EcoO109I RGGNCCY 1 cut(s) 213
EcoRII CCWGG 1 cut(s) 1214
EcoT14I CCWWGG 1 cut(s) 557
EcoT22I ATGCAT 1 cut(s) 925
ErhI CCWWGG 1 cut(s) 557
FaeI CATG 5 cut(s) 37, 43, 64, 707, 1336
FatI CATG 5 cut(s) 33, 39, 60, 703, 1332
FauI CCCGC 2 cut(s) 64, 516
Fnu4HI GCNGC 2 cut(s) 48, 203
FokI GGATG 3 cut(s) 299, 1077, 1198
Fsp4HI GCNGC 2 cut(s) 48, 203
FspBI CTAG 4 cut(s) 428, 558, 639, 689
GluI GCNGC 2 cut(s) 48, 203
GsuI CTGGAG 1 cut(s) 1263
HaeIII GGCC 4 cut(s) 131, 215, 484, 1316
HapII CCGG 1 cut(s) 1350
HgaI GACGC 3 cut(s) 148, 383, 947
Hin1I GRCGYC 1 cut(s) 394
Hin1II CATG 5 cut(s) 37, 43, 64, 707, 1336
HincII GTYRAC 2 cut(s) 564, 1240
HindII GTYRAC 2 cut(s) 564, 1240
HindIII AAGCTT 1 cut(s) 332
HinfI GANTC 3 cut(s) 304, 662, 1286
HpaI GTTAAC 1 cut(s) 564
HpaII CCGG 1 cut(s) 1350
HphI GGTGA 3 cut(s) 22, 256, 865
Hpy166II GTNNAC 2 cut(s) 564, 1240
Hpy188I TCNGA 7 cut(s) 318, 406, 626, 646, 750, 990, 1143
Hpy188III TCNNGA 3 cut(s) 328, 428, 1280
Hpy8I GTNNAC 2 cut(s) 564, 1240
Hpy99I CGWCG 1 cut(s) 164
HpyAV CCTTC 2 cut(s) 274, 384
HpyCH4III ACNGT 2 cut(s) 388, 1232
HpyCH4IV ACGT 1 cut(s) 1096
HpyCH4V TGCA 8 cut(s) 148, 605, 923, 943, 1047, 1055, 1088, 1190
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 73
HpyF3I CTNAG 6 cut(s) 6, 110, 405, 695, 741, 1125
HpySE526I ACGT 1 cut(s) 1096
Hsp92I GRCGYC 1 cut(s) 394
Hsp92II CATG 5 cut(s) 37, 43, 64, 707, 1336
KspAI GTTAAC 1 cut(s) 564
Kzo9I GATC 7 cut(s) 15, 238, 657, 759, 1138, 1143, 1219
LmnI GCTCC 3 cut(s) 456, 649, 1282
Lsp1109I GCAGC 2 cut(s) 34, 189
LweI GCATC 3 cut(s) 232, 1056, 1287
MaeI CTAG 4 cut(s) 428, 558, 639, 689
MaeII ACGT 1 cut(s) 1096
MaeIII GTNAC 5 cut(s) 289, 382, 532, 706, 1132
MalI GATC 7 cut(s) 17, 240, 659, 761, 1140, 1145, 1221
MboI GATC 7 cut(s) 15, 238, 657, 759, 1138, 1143, 1219
MboII GAAGA 3 cut(s) 37, 289, 1067
MfeI CAATTG 2 cut(s) 251, 1042
MflI RGATCY 1 cut(s) 1219
MhlI GDGCHC 1 cut(s) 1332
MlsI TGGCCA 1 cut(s) 131
MluCI AATT 8 cut(s) 175, 251, 833, 938, 951, 1042, 1065, 1205
MluNI TGGCCA 1 cut(s) 131
MmeI TCCRAC 1 cut(s) 478
Mox20I TGGCCA 1 cut(s) 131
Mph1103I ATGCAT 1 cut(s) 925
MroXI GAANNNNTTC 3 cut(s) 29, 105, 515
MscI TGGCCA 1 cut(s) 131
MseI TTAA 2 cut(s) 563, 1166
MslI CAYNNNNRTG 2 cut(s) 38, 1095
Msp20I TGGCCA 1 cut(s) 131
MspA1I CMGCKG 1 cut(s) 523
MspI CCGG 1 cut(s) 1350
MspR9I CCNGG 1 cut(s) 1216
MunI CAATTG 2 cut(s) 251, 1042
MvaI CCWGG 1 cut(s) 1216
MwoI GCNNNNNNNGC 2 cut(s) 56, 73
NdeII GATC 7 cut(s) 15, 238, 657, 759, 1138, 1143, 1219
NlaIII CATG 5 cut(s) 37, 43, 64, 707, 1336
NlaIV GGNNCC 2 cut(s) 214, 1278
NmuCI GTSAC 3 cut(s) 382, 532, 1132
NsiI ATGCAT 1 cut(s) 925
NspI RCATGY 1 cut(s) 1336
PcsI WCGNNNNNNNCGW 1 cut(s) 168
PdmI GAANNNNTTC 3 cut(s) 29, 105, 515
PfeI GAWTC 3 cut(s) 304, 662, 1286
PkrI GCNGC 2 cut(s) 49, 204
PmaCI CACGTG 1 cut(s) 1097
PmlI CACGTG 1 cut(s) 1097
Ppu21I YACGTR 1 cut(s) 1097
Psp6I CCWGG 1 cut(s) 1214
PspCI CACGTG 1 cut(s) 1097
PspGI CCWGG 1 cut(s) 1214
PspN4I GGNNCC 2 cut(s) 214, 1278
PspPI GGNCC 2 cut(s) 213, 1314
PstI CTGCAG 1 cut(s) 1057
PstNI CAGNNNCTG 1 cut(s) 1152
PsuI RGATCY 1 cut(s) 1219
RsaI GTAC 2 cut(s) 617, 1122
RsaNI GTAC 2 cut(s) 616, 1121
RseI CAYNNNNRTG 2 cut(s) 38, 1095
SaqAI TTAA 2 cut(s) 563, 1166
SatI GCNGC 2 cut(s) 48, 203
Sau3AI GATC 7 cut(s) 15, 238, 657, 759, 1138, 1143, 1219
Sau96I GGNCC 2 cut(s) 213, 1314
ScrFI CCNGG 1 cut(s) 1216
SduI GDGCHC 1 cut(s) 1332
SfaNI GCATC 3 cut(s) 232, 1056, 1287
SfcI CTRYAG 1 cut(s) 1053
SmiMI CAYNNNNRTG 2 cut(s) 38, 1095
SmlI CTYRAG 2 cut(s) 326, 413
SmoI CTYRAG 2 cut(s) 326, 413
Sse9I AATT 8 cut(s) 175, 251, 833, 938, 951, 1042, 1065, 1205
SsiI CCGC 4 cut(s) 57, 523, 668, 1103
SspI AATATT 1 cut(s) 261
SspMI CTAG 4 cut(s) 428, 558, 639, 689
StyD4I CCNGG 1 cut(s) 1214
StyI CCWWGG 1 cut(s) 557
TaaI ACNGT 2 cut(s) 388, 1232
TaiI ACGT 1 cut(s) 1099
TaqI TCGA 6 cut(s) 69, 162, 226, 241, 377, 660
TasI AATT 8 cut(s) 175, 251, 833, 938, 951, 1042, 1065, 1205
TfiI GAWTC 3 cut(s) 304, 662, 1286
Tru1I TTAA 2 cut(s) 563, 1166
Tru9I TTAA 2 cut(s) 563, 1166
TscAI CASTG 3 cut(s) 132, 393, 1057
TseFI GTSAC 3 cut(s) 382, 532, 1132
TseI GCWGC 2 cut(s) 47, 202
Tsp45I GTSAC 3 cut(s) 382, 532, 1132
TspDTI ATGAA 7 cut(s) 22, 77, 82, 524, 669, 692, 1218
TspGWI ACGGA 1 cut(s) 1151
TspRI CASTG 3 cut(s) 132, 393, 1057
XapI RAATTY 2 cut(s) 951, 1205
XbaI TCTAGA 1 cut(s) 427
XceI RCATGY 1 cut(s) 1336
XcmI CCANNNNNNNNNTGG 1 cut(s) 226
XmaJI CCTAGG 1 cut(s) 557
XmnI GAANNNNTTC 3 cut(s) 29, 105, 515
XspI CTAG 4 cut(s) 428, 558, 639, 689
Zsp2I ATGCAT 1 cut(s) 925
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.